Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001757.1

Orthogroup ID

OG0005036

Physical Location & Seq

Genomic Coordinates Reverse (-)

65023 .. 66165

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001757.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atgaaatctagatttgattctgtattcaagctctgcatagtgttccctgccggtcgaaatcactctcctttccccagaactgttctcccaacttgtttaagtttcgtgcacaccacctattcgacagtttgcctcacacaggaagaaagtgtagtggaagacatttttgaccaaccaaagacctctgcagaagttctggagaaatggggttgtagtgatgctgacatatcgaagctgttcaggcgtcgacctactttaaggaatgctgaccttaaccagcttcagttcaagttaaaccttttgagtggattaggtattactgcacctgagcttttgaagatgatcaattgtcgcccccggttgctcagtgttcggattgatcattgctttgatgagcggcatgagttctttatgaaattgtttgggtcaagggaactgcttgtcaaagccattgtaaggaacccgtctctcttgatctatgacttccataataaagtcaagccgaccattgctctatatgagggaatgggtcttagtcgggaggagttagtcccaatgctaatatcacggccaacattgatcccaagaactacatttaacaacgagaagatggagtacatacggaaaactggactgtcaaatgagtccaggatgtataagtatgttgtgacactcattggcatttcacgccttgaaactatcagtgagaaagtggcaaattttgaaaagtttggtttctcagaatatgacattttcggccttttgggaaggtctcccatagtgtttactctttcagtggataaggttcagaggaacatgactttcgttttaggacaaatgaaacttcctgctacagtgattcttgagcacccatttttgctgtacatgaatctggaggctgctttgaagccgcgagtatgtcttgcaggaaaaattgaggatatggatcttgatgtgcaaattaaaggacctaagttgctgacggcattgagaatgacagagaaaagatttgtgaaggcattcgttaattgtcacccaagggatgttgctgatgaattgatggagtactatacaaaagcaaaggttgtgaagcgattggcagaagcctcaaagaagaaattgtatgaaggctttccttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

380

Amino Acids

43.74

Weight (kDa)

9.28

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79220
fragaria_vesca	FvH4_3g15040 FvH4_3g15050
malus_domestica	MD10G1208300.v1.1 MD10G1208400.v1.1
prunus_persica	Prupe.4G134600_v2.0.a1 Prupe.4G134700_v2.0.a1
pyrus_communis	pycom10g17720
rosa_chinensis	RchiOBHm_Chr5g0024801 RchiOBHm_Chr5g0024811
rosa_laevigata	RLG00000032815 RLG00000032816
rosa_multiflora	Rmu_sc0001757.1_g000014 Rmu_sc0001757.1_g000016 Rmu_sc0009744.1_g000008 Rmu_sc0016384.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054570 Rroxscaffold_1G00054580
rosa_rugosa	Rorug05G0084500 Rorug05G0084600
rosa_samantha	Rh5AG176300 Rh5AG176400 Rh5BG174000 Rh5BG174100 Rh5CG191000 Rh5CG191100 Rh5DG175600 Rh5DG175700
rosa_wichuraiana	Rw5G015980 Rw5G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	247
AccII	CGCG	1 cut(s)	913
AciI	CCGC	2 cut(s)	397, 911
AclWI	GGATC	2 cut(s)	574, 954
AcoI	YGGCCR	1 cut(s)	569
AcsI	RAATTY	1 cut(s)	718
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	3 cut(s)	617, 884, 1067
AfiI	CCNNNNNNNGG	2 cut(s)	139, 456
AgsI	TTSAA	6 cut(s)	28, 289, 337, 695, 725, 907
AjnI	CCWGG	1 cut(s)	647
AluBI	AGCT	4 cut(s)	31, 235, 280, 331
AluI	AGCT	4 cut(s)	31, 235, 280, 331
Alw21I	GWGCWC	2 cut(s)	111, 870
Alw26I	GTCTC	2 cut(s)	471, 777
Alw44I	GTGCAC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	574, 954
AoxI	GGCC	2 cut(s)	569, 757
ApaLI	GTGCAC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	899
ApoI	RAATTY	1 cut(s)	718
Asp700I	GAANNNNTTC	3 cut(s)	236, 1019, 1131
AspS9I	GGNCC	1 cut(s)	968
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	1025
AvaII	GGWCC	1 cut(s)	968
BaeGI	GKGCMC	1 cut(s)	111
BarI	GAAGNNNNNNTAC	2 cut(s)	599, 631
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	111, 870
BbvI	GCAGC	1 cut(s)	886
BccI	CCATC	2 cut(s)	604, 1054
BceAI	ACGGC	2 cut(s)	584, 999
BciT130I	CCWGG	1 cut(s)	649
BclI	TGATCA	2 cut(s)	342, 379
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	471, 777
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	186, 852
BisI	GCNGC	3 cut(s)	398, 900, 911
BlsI	GCNGC	3 cut(s)	399, 901, 912
BmcAI	AGTACT	1 cut(s)	1067
Bme1390I	CCNGG	2 cut(s)	358, 649
Bme18I	GGWCC	1 cut(s)	968
BmgT120I	GGNCC	1 cut(s)	968
BmiI	GGNNCC	1 cut(s)	461
BmrFI	CCNGG	2 cut(s)	358, 649
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	2 cut(s)	218, 914
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	884
BpuMI	CCSGG	1 cut(s)	358
BsaBI	GATNNNNATC	1 cut(s)	945
BsaHI	GRCGYC	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	356, 1037
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 456
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	634
Bse3DI	GCAATG	2 cut(s)	382, 507
Bse8I	GATNNNNATC	1 cut(s)	945
BseBI	CCWGG	1 cut(s)	649
BseDI	CCNNGG	2 cut(s)	356, 1037
BseGI	GGATG	2 cut(s)	657, 1048
BseJI	GATNNNNATC	1 cut(s)	945
BseLI	CCNNNNNNNGG	2 cut(s)	139, 456
BseMI	GCAATG	2 cut(s)	382, 507
BseMII	CTCAG	3 cut(s)	318, 379, 753
BseNI	ACTGG	1 cut(s)	634
BseRI	GAGGAG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	886
BsgI	GTGCAG	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	913
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	571, 759
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	111, 870
BsiSI	CCGG	2 cut(s)	51, 358
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	2 cut(s)	139, 456
BsmAI	GTCTC	2 cut(s)	471, 777
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	536
BsmI	GAATGC	2 cut(s)	268, 1019
BsnI	GGCC	2 cut(s)	571, 759
Bso31I	GGTCTC	1 cut(s)	777
Bsp1286I	GDGCHC	2 cut(s)	111, 870
Bsp1407I	TGTACA	1 cut(s)	882
Bsp143I	GATC	5 cut(s)	342, 379, 474, 579, 946
BspACI	CCGC	2 cut(s)	397, 911
BspANI	GGCC	2 cut(s)	571, 759
BspCNI	CTCAG	3 cut(s)	319, 378, 752
BspFNI	CGCG	1 cut(s)	913
BspLI	GGNNCC	1 cut(s)	461
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	2 cut(s)	574, 954
BspTNI	GGTCTC	1 cut(s)	777
BsrBI	CCGCTC	1 cut(s)	397
BsrDI	GCAATG	2 cut(s)	382, 507
BsrFI	RCCGGY	1 cut(s)	50
BsrGI	TGTACA	1 cut(s)	882
BsrI	ACTGG	1 cut(s)	634
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	356, 1037
BssMI	GATC	5 cut(s)	342, 379, 474, 579, 946
BssNI	GRCGYC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	1037
Bst2UI	CCWGG	1 cut(s)	649
Bst4CI	ACNGT	4 cut(s)	82, 127, 636, 856
BstACI	GRCGYC	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	882
BstDEI	CTNAG	5 cut(s)	327, 365, 533, 739, 972
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	657, 1048
BstFNI	CGCG	1 cut(s)	913
BstKTI	GATC	5 cut(s)	345, 382, 477, 582, 949
BstMAI	GTCTC	2 cut(s)	471, 777
BstMBI	GATC	5 cut(s)	342, 379, 474, 579, 946
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 687
BstNI	CCWGG	1 cut(s)	649
BstSCI	CCNGG	2 cut(s)	356, 647
BstSFI	CTRYAG	2 cut(s)	186, 852
BstSLI	GKGCMC	1 cut(s)	111
BstUI	CGCG	1 cut(s)	913
BstV1I	GCAGC	1 cut(s)	886
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	946
BstYI	RGATCY	1 cut(s)	946
BsuRI	GGCC	2 cut(s)	571, 759
BtsCI	GGATG	2 cut(s)	657, 1048
BtsIMutI	CAGTG	4 cut(s)	373, 709, 801, 861
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	968
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	3 cut(s)	616, 883, 1066
CviAII	CATG	3 cut(s)	401, 817, 886
CviQI	GTAC	3 cut(s)	616, 883, 1066
DdeI	CTNAG	5 cut(s)	327, 365, 533, 739, 972
DpnI	GATC	5 cut(s)	344, 381, 476, 581, 948
DpnII	GATC	5 cut(s)	342, 379, 474, 579, 946
EaeI	YGGCCR	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	1037
Eco31I	GGTCTC	1 cut(s)	777
Eco47I	GGWCC	1 cut(s)	968
Eco57I	CTGAAG	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	968
EcoRII	CCWGG	1 cut(s)	647
EcoT14I	CCWWGG	1 cut(s)	1037
ErhI	CCWWGG	1 cut(s)	1037
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	3 cut(s)	404, 820, 889
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	3 cut(s)	400, 816, 885
FbaI	TGATCA	2 cut(s)	342, 379
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	398, 900, 911
FokI	GGATG	2 cut(s)	664, 1055
Fsp4HI	GCNGC	3 cut(s)	398, 900, 911
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	3 cut(s)	398, 900, 911
GsuI	CTGGAG	2 cut(s)	218, 914
HaeIII	GGCC	2 cut(s)	571, 759
HapII	CCGG	2 cut(s)	51, 358
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	404, 820, 889
HincII	GTYRAC	1 cut(s)	248
HindII	GTYRAC	1 cut(s)	248
HinfI	GANTC	4 cut(s)	17, 644, 859, 889
HpaII	CCGG	2 cut(s)	51, 358
HphI	GGTGA	1 cut(s)	1025
Hpy166II	GTNNAC	3 cut(s)	109, 248, 786
Hpy188I	TCNGA	3 cut(s)	375, 742, 810
Hpy188III	TCNNGA	7 cut(s)	9, 197, 472, 539, 863, 893, 950
Hpy8I	GTNNAC	3 cut(s)	109, 248, 786
Hpy99I	CGWCG	1 cut(s)	249
HpyAV	CCTTC	3 cut(s)	762, 1009, 1121
HpyCH4III	ACNGT	4 cut(s)	82, 127, 636, 856
HpyCH4V	TGCA	6 cut(s)	36, 109, 188, 323, 926, 958
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 687
HpyF3I	CTNAG	5 cut(s)	327, 365, 533, 739, 972
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	3 cut(s)	404, 820, 889
Ksp22I	TGATCA	2 cut(s)	342, 379
Kzo9I	GATC	5 cut(s)	342, 379, 474, 579, 946
Lsp1109I	GCAGC	1 cut(s)	886
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	667, 1031
MalI	GATC	5 cut(s)	344, 381, 476, 581, 948
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	5 cut(s)	342, 379, 474, 579, 946
MboII	GAAGA	5 cut(s)	155, 170, 349, 619, 1126
MfeI	CAATTG	1 cut(s)	346
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	2 cut(s)	111, 870
MluCI	AATT	8 cut(s)	346, 416, 718, 933, 960, 1027, 1055, 1118
MlyI	GAGTC	1 cut(s)	653
MnlI	CCTC	8 cut(s)	143, 193, 514, 535, 804, 889, 931, 1117
MroXI	GAANNNNTTC	3 cut(s)	236, 1019, 1131
MseI	TTAA	7 cut(s)	98, 257, 273, 293, 597, 963, 1026
MspI	CCGG	2 cut(s)	51, 358
MspR9I	CCNGG	2 cut(s)	358, 649
MunI	CAATTG	1 cut(s)	346
Mva1269I	GAATGC	2 cut(s)	268, 1019
MvaI	CCWGG	1 cut(s)	649
MvnI	CGCG	1 cut(s)	913
MwoI	GCNNNNNNNGC	2 cut(s)	241, 687
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	5 cut(s)	342, 379, 474, 579, 946
NlaIII	CATG	3 cut(s)	404, 820, 889
NlaIV	GGNNCC	1 cut(s)	461
NmuCI	GTSAC	2 cut(s)	667, 1031
PctI	GAATGC	2 cut(s)	268, 1019
PdmI	GAANNNNTTC	3 cut(s)	236, 1019, 1131
PfeI	GAWTC	3 cut(s)	17, 859, 889
PfoI	TCCNGGA	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	399, 901, 912
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
PpuMI	RGGWCCY	1 cut(s)	968
Psp5II	RGGWCCY	1 cut(s)	968
Psp6I	CCWGG	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	647
PspN4I	GGNNCC	1 cut(s)	461
PspPI	GGNCC	1 cut(s)	968
PspPPI	RGGWCCY	1 cut(s)	968
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	946
RsaI	GTAC	3 cut(s)	617, 884, 1067
RsaNI	GTAC	3 cut(s)	616, 883, 1066
SalI	GTCGAC	1 cut(s)	246
SaqAI	TTAA	7 cut(s)	98, 257, 273, 293, 597, 963, 1026
SatI	GCNGC	3 cut(s)	398, 900, 911
Sau3AI	GATC	5 cut(s)	342, 379, 474, 579, 946
Sau96I	GGNCC	1 cut(s)	968
ScaI	AGTACT	1 cut(s)	1067
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	358, 649
SduI	GDGCHC	2 cut(s)	111, 870
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	2 cut(s)	186, 852
SinI	GGWCC	1 cut(s)	968
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	8 cut(s)	346, 416, 718, 933, 960, 1027, 1055, 1118
SsiI	CCGC	2 cut(s)	397, 911
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	356, 647
StyI	CCWWGG	1 cut(s)	1037
TaaI	ACNGT	4 cut(s)	82, 127, 636, 856
TaqI	TCGA	4 cut(s)	55, 122, 230, 247
TasI	AATT	8 cut(s)	346, 416, 718, 933, 960, 1027, 1055, 1118
TatI	WGTACW	3 cut(s)	615, 882, 1065
TauI	GCSGC	2 cut(s)	400, 913
TfiI	GAWTC	3 cut(s)	17, 859, 889
Tru1I	TTAA	7 cut(s)	98, 257, 273, 293, 597, 963, 1026
Tru9I	TTAA	7 cut(s)	98, 257, 273, 293, 597, 963, 1026
TscAI	CASTG	4 cut(s)	373, 709, 801, 861
TseFI	GTSAC	2 cut(s)	667, 1031
TseI	GCWGC	1 cut(s)	899
Tsp45I	GTSAC	2 cut(s)	667, 1031
TspDTI	ATGAA	6 cut(s)	17, 428, 854, 902, 1068, 1140
TspGWI	ACGGA	1 cut(s)	637
TspRI	CASTG	4 cut(s)	373, 709, 801, 861
VneI	GTGCAC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	968
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	718
XbaI	TCTAGA	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	247
XmnI	GAANNNNTTC	3 cut(s)	236, 1019, 1131
XspI	CTAG	1 cut(s)	9
ZrmI	AGTACT	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.