Rh5BG174000
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005036
Physical Location & Seq
Forward (+)
18223631 .. 18249250
25620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG174000.1

Sequence Viewer

Length: 1140 bp
ATGCTAAATTCATTTAGAATTTTGCTAGATTTATTTGTGTTCCCTGCCGGTCGAAATCACTCTCCTTTCCCCAGAACTGTTCTCCCAACTTGTTTAAGTTTCGTGCACACCACTTATTCGACAGTTTGCCTCACTCAGGAAGAAAGTGTAGTGGAAGACATTTTTGACCAACCAAAGACCTCTGCAGAAGTTCTGGAGAAATGGGGTTGTAGTGATGCTGACATATCGAAGCTGTTCAGGCGGCGGCCTACTTTAAGGAATGCTGACCTTAACCAGCTTCAGTTCAAGTTAAACCTTTTGAGTGGATTGGGTATTACTGCACCTGAGCTTTTGAAGATGATCAATTGTCGCCCCCGGTTGCTCAGTGTTCGGGTTGATCATTGCTTTGATGAGCGGCATGAGTTCTTTATGAAATTGTTTGGGTCAAGGGAACTGCTTGTCAAAGCCATTGTAAGGAACCCGTCTCTCTTGATCTATGACTTCCATAATAAAGTCAAGCCGACCATTGCTCTATATGAGGGAATGGGTCTTAGTCGGGAGGAGTTAGTCCCAATGCTAATATCACGGCCGACATTAATCCCAAGAACTACATTTAACGACGAGAAGATGGAGTATATACGGAAAACTGGACTGTCAAATGAGTCCAGGATGTATAAGTATGTTGTGACACTCATTGGCATTTCACGCCTTGAAACTATCAGTGAGAAAGTGGCAAATTTTGAAAAGTTTGGTTTCTCAGAAGATGAGATTTTCGGCCTTTTGGGAAGGTCTCCCATAGTGTTTACTCTTTCAGTGGATAAGGTCCAGAGGAACATGACTTTCGTTTTAGGACAAATGAAACTTCCTGCTACAGTGATTCTTGAGCACCCATTTTTGCTGTACATGAATCTGGAGGCTGCTTTGAAGCCGCGAGTATGTCTTGCAGGAAAAATTGAGGATTTGGATCTTGATGTGCAAATTAAAGGACCTAAGTTGCTGACGGCATTGAGAATGACAGAGAAAAGATTTGTGAAGGCATTTGTTAATTGTCACCCAAAGGATGTTGCTGATGAATTGATGGAGCACTATACAAAAGCAAAGGGTGTGAAGCGATTGGCAGAAGCCTCAAAGAAGAAATTGTATGAAGGCTTTCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

379

Amino Acids

43.49

Weight (kDa)

9.08

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 63 - 138 7.2e-12 mTERF
mTERF PF02536 134 - 336 5.9e-32 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 394
AccII CGCG 1 cut(s) 910
AciI CCGC 4 cut(s) 241, 244, 394, 908
AclWI GGATC 1 cut(s) 951
AcoI YGGCCR 1 cut(s) 566
AcsI RAATTY 3 cut(s) 7, 18, 715
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 1 cut(s) 881
AfiI CCNNNNNNNGG 2 cut(s) 136, 453
AgsI TTSAA 5 cut(s) 286, 334, 692, 722, 904
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 3 cut(s) 232, 277, 328
AluI AGCT 3 cut(s) 232, 277, 328
Alw21I GWGCWC 3 cut(s) 108, 867, 1065
Alw26I GTCTC 2 cut(s) 468, 774
Alw44I GTGCAC 1 cut(s) 104
AlwI GGATC 1 cut(s) 951
AoxI GGCC 3 cut(s) 245, 566, 754
ApaLI GTGCAC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 896
ApoI RAATTY 3 cut(s) 7, 18, 715
AseI ATTAAT 1 cut(s) 575
Asp700I GAANNNNTTC 2 cut(s) 233, 1128
AspS9I GGNCC 2 cut(s) 802, 965
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 1 cut(s) 1022
AvaII GGWCC 2 cut(s) 802, 965
BaeGI GKGCMC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 3 cut(s) 108, 867, 1065
BbvI GCAGC 1 cut(s) 883
BccI CCATC 2 cut(s) 601, 1051
BceAI ACGGC 2 cut(s) 581, 996
BciT130I CCWGG 1 cut(s) 646
BclI TGATCA 2 cut(s) 339, 376
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 468, 774
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 2 cut(s) 183, 849
BisI GCNGC 5 cut(s) 242, 245, 395, 897, 908
BlsI GCNGC 5 cut(s) 243, 246, 396, 898, 909
Bme1390I CCNGG 2 cut(s) 355, 646
Bme18I GGWCC 2 cut(s) 802, 965
BmgT120I GGNCC 2 cut(s) 802, 965
BmiI GGNNCC 1 cut(s) 458
BmrFI CCNGG 2 cut(s) 355, 646
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 2 cut(s) 215, 911
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 881
BpuMI CCSGG 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 942
BsaI GGTCTC 1 cut(s) 774
BsaJI CCNNGG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 453
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 631
Bse3DI GCAATG 2 cut(s) 379, 504
Bse8I GATNNNNATC 1 cut(s) 942
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 2 cut(s) 654, 1045
BseJI GATNNNNATC 1 cut(s) 942
BseLI CCNNNNNNNGG 2 cut(s) 136, 453
BseMI GCAATG 2 cut(s) 379, 504
BseMII CTCAG 4 cut(s) 149, 315, 376, 750
BseNI ACTGG 1 cut(s) 631
BseRI GAGGAG 1 cut(s) 554
BseSI GKGCMC 1 cut(s) 108
BseX3I CGGCCG 1 cut(s) 566
BseXI GCAGC 1 cut(s) 883
BsgI GTGCAG 1 cut(s) 303
Bsh1236I CGCG 1 cut(s) 910
Bsh1285I CGRYCG 2 cut(s) 52, 569
BshFI GGCC 3 cut(s) 247, 568, 756
BsiEI CGRYCG 2 cut(s) 52, 569
BsiHKAI GWGCWC 3 cut(s) 108, 867, 1065
BsiSI CCGG 2 cut(s) 48, 355
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 2 cut(s) 136, 453
BsmAI GTCTC 2 cut(s) 468, 774
BsmBI CGTCTC 1 cut(s) 468
BsmFI GGGAC 1 cut(s) 533
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 3 cut(s) 247, 568, 756
Bso31I GGTCTC 1 cut(s) 774
Bsp1286I GDGCHC 3 cut(s) 108, 867, 1065
Bsp1407I TGTACA 1 cut(s) 879
Bsp143I GATC 4 cut(s) 339, 376, 471, 943
BspACI CCGC 4 cut(s) 241, 244, 394, 908
BspANI GGCC 3 cut(s) 247, 568, 756
BspCNI CTCAG 4 cut(s) 148, 316, 375, 749
BspFNI CGCG 1 cut(s) 910
BspLI GGNNCC 1 cut(s) 458
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 951
BspTNI GGTCTC 1 cut(s) 774
BsrBI CCGCTC 1 cut(s) 394
BsrDI GCAATG 2 cut(s) 379, 504
BsrFI RCCGGY 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 879
BsrI ACTGG 1 cut(s) 631
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 4 cut(s) 339, 376, 471, 943
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 4 cut(s) 79, 124, 633, 853
BstAUI TGTACA 1 cut(s) 879
BstDEI CTNAG 6 cut(s) 135, 324, 362, 530, 736, 969
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 2 cut(s) 654, 1045
BstFNI CGCG 1 cut(s) 910
BstKTI GATC 4 cut(s) 342, 379, 474, 946
BstMAI GTCTC 2 cut(s) 468, 774
BstMBI GATC 4 cut(s) 339, 376, 471, 943
BstMCI CGRYCG 2 cut(s) 52, 569
BstMWI GCNNNNNNNGC 2 cut(s) 238, 684
BstNI CCWGG 1 cut(s) 646
BstSCI CCNGG 2 cut(s) 353, 644
BstSFI CTRYAG 2 cut(s) 183, 849
BstSLI GKGCMC 1 cut(s) 108
BstUI CGCG 1 cut(s) 910
BstV1I GCAGC 1 cut(s) 883
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 943
BstYI RGATCY 1 cut(s) 943
BstZI CGGCCG 1 cut(s) 566
BsuRI GGCC 3 cut(s) 247, 568, 756
BtsCI GGATG 2 cut(s) 654, 1045
BtsIMutI CAGTG 4 cut(s) 370, 706, 798, 858
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 802, 965
Csp6I GTAC 1 cut(s) 880
CviAII CATG 3 cut(s) 398, 814, 883
CviQI GTAC 1 cut(s) 880
DdeI CTNAG 6 cut(s) 135, 324, 362, 530, 736, 969
DpnI GATC 4 cut(s) 341, 378, 473, 945
DpnII GATC 4 cut(s) 339, 376, 471, 943
EaeI YGGCCR 1 cut(s) 566
EagI CGGCCG 1 cut(s) 566
EclXI CGGCCG 1 cut(s) 566
Eco31I GGTCTC 1 cut(s) 774
Eco47I GGWCC 2 cut(s) 802, 965
Eco52I CGGCCG 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 263
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 965
EcoRII CCWGG 1 cut(s) 644
Esp3I CGTCTC 1 cut(s) 468
FaeI CATG 3 cut(s) 401, 817, 886
FaqI GGGAC 1 cut(s) 533
FatI CATG 3 cut(s) 397, 813, 882
FbaI TGATCA 2 cut(s) 339, 376
Fnu4HI GCNGC 5 cut(s) 242, 245, 395, 897, 908
FokI GGATG 2 cut(s) 661, 1052
Fsp4HI GCNGC 5 cut(s) 242, 245, 395, 897, 908
FspBI CTAG 1 cut(s) 26
GluI GCNGC 5 cut(s) 242, 245, 395, 897, 908
GsuI CTGGAG 2 cut(s) 215, 911
HaeIII GGCC 3 cut(s) 247, 568, 756
HapII CCGG 2 cut(s) 48, 355
Hin1II CATG 3 cut(s) 401, 817, 886
HinfI GANTC 3 cut(s) 641, 856, 886
HpaII CCGG 2 cut(s) 48, 355
HphI GGTGA 1 cut(s) 1022
Hpy166II GTNNAC 2 cut(s) 106, 783
Hpy188I TCNGA 1 cut(s) 739
Hpy188III TCNNGA 8 cut(s) 137, 194, 469, 536, 805, 860, 890, 947
Hpy8I GTNNAC 2 cut(s) 106, 783
Hpy99I CGWCG 1 cut(s) 602
HpyAV CCTTC 3 cut(s) 759, 1006, 1118
HpyCH4III ACNGT 4 cut(s) 79, 124, 633, 853
HpyCH4V TGCA 5 cut(s) 106, 185, 320, 923, 955
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 684
HpyF3I CTNAG 6 cut(s) 135, 324, 362, 530, 736, 969
Hsp92II CATG 3 cut(s) 401, 817, 886
Ksp22I TGATCA 2 cut(s) 339, 376
Kzo9I GATC 4 cut(s) 339, 376, 471, 943
LmnI GCTCC 1 cut(s) 1060
Lsp1109I GCAGC 1 cut(s) 883
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 664, 1028
MalI GATC 4 cut(s) 341, 378, 473, 945
MbiI CCGCTC 1 cut(s) 394
MboI GATC 4 cut(s) 339, 376, 471, 943
MboII GAAGA 6 cut(s) 152, 167, 346, 616, 752, 1123
MfeI CAATTG 1 cut(s) 343
MflI RGATCY 1 cut(s) 943
MhlI GDGCHC 3 cut(s) 108, 867, 1065
MlyI GAGTC 1 cut(s) 650
MnlI CCTC 8 cut(s) 140, 190, 511, 532, 801, 886, 928, 1114
MroXI GAANNNNTTC 2 cut(s) 233, 1128
MseI TTAA 8 cut(s) 95, 254, 270, 290, 575, 594, 960, 1023
MspI CCGG 2 cut(s) 48, 355
MspR9I CCNGG 2 cut(s) 355, 646
MunI CAATTG 1 cut(s) 343
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 1 cut(s) 646
MvnI CGCG 1 cut(s) 910
MwoI GCNNNNNNNGC 2 cut(s) 238, 684
NciI CCSGG 1 cut(s) 355
NdeII GATC 4 cut(s) 339, 376, 471, 943
NlaIII CATG 3 cut(s) 401, 817, 886
NlaIV GGNNCC 1 cut(s) 458
NmuCI GTSAC 2 cut(s) 664, 1028
PctI GAATGC 1 cut(s) 265
PdmI GAANNNNTTC 2 cut(s) 233, 1128
PfeI GAWTC 2 cut(s) 856, 886
PfoI TCCNGGA 1 cut(s) 644
PkrI GCNGC 5 cut(s) 243, 246, 396, 898, 909
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
PpuMI RGGWCCY 1 cut(s) 965
PshBI ATTAAT 1 cut(s) 575
Psp5II RGGWCCY 1 cut(s) 965
Psp6I CCWGG 1 cut(s) 644
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 1 cut(s) 458
PspPI GGNCC 2 cut(s) 802, 965
PspPPI RGGWCCY 1 cut(s) 965
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 943
RsaI GTAC 1 cut(s) 881
RsaNI GTAC 1 cut(s) 880
SaqAI TTAA 8 cut(s) 95, 254, 270, 290, 575, 594, 960, 1023
SatI GCNGC 5 cut(s) 242, 245, 395, 897, 908
Sau3AI GATC 4 cut(s) 339, 376, 471, 943
Sau96I GGNCC 2 cut(s) 802, 965
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 2 cut(s) 355, 646
SduI GDGCHC 3 cut(s) 108, 867, 1065
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 2 cut(s) 183, 849
SinI GGWCC 2 cut(s) 802, 965
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
SsiI CCGC 4 cut(s) 241, 244, 394, 908
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 353, 644
TaaI ACNGT 4 cut(s) 79, 124, 633, 853
TaqI TCGA 3 cut(s) 52, 119, 227
TatI WGTACW 1 cut(s) 879
TauI GCSGC 4 cut(s) 244, 247, 397, 910
TfiI GAWTC 2 cut(s) 856, 886
Tru1I TTAA 8 cut(s) 95, 254, 270, 290, 575, 594, 960, 1023
Tru9I TTAA 8 cut(s) 95, 254, 270, 290, 575, 594, 960, 1023
TscAI CASTG 4 cut(s) 370, 706, 798, 858
TseFI GTSAC 2 cut(s) 664, 1028
TseI GCWGC 1 cut(s) 896
Tsp45I GTSAC 2 cut(s) 664, 1028
TspDTI ATGAA 5 cut(s) 425, 851, 899, 1065, 1137
TspGWI ACGGA 1 cut(s) 634
TspRI CASTG 4 cut(s) 370, 706, 798, 858
VneI GTGCAC 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 802, 965
VspI ATTAAT 1 cut(s) 575
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 3 cut(s) 7, 18, 715
XmnI GAANNNNTTC 2 cut(s) 233, 1128
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.