Rroxscaffold_1G00054580
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005036
Physical Location & Seq
Forward (+)
75938853 .. 75940007
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054580.1

Sequence Viewer

Length: 1155 bp
ATGATTGTTGATATGAAATCTAGATTTGATTCTGTATTCAAGCTCTGCATAGTGTTTCCTGCCGCTCGAAATCACTCTCCTTTCCCCAGAACTGTTCTCCCAACTTGTTTAAGTTTCGTGCACACCACCTATTCGACAGTTTGCCTCACTCAGGAAGAAAGTGTAGTGGAAGACATTTTTGACCAACCAAAGACCTCTGCAGAAGTTCTGGAGAAATGGGGTTGTAGTGATGCTGACATATCGAAGCTGTTCAGGCGCCGGCCTACTTTAAGGAATGCTGACCTTTACCAGCTTCAGTTCAAGTTAAACCTTTTGAGTGGATTGGGTATTACTGCACCTGAGCTTTTGAAGATGATCAATTGTCGCCCCCGGTTGCTCAGTGTTCGGATTGATCATTGCTTTGATGAGCGGCATGAGTTCTTTATGAAATTGTTTGGATCAAGGGAACTGCTTCTCAAAGCCATTGTAAGGAACCCGTCTCTCTTGATCTATGACTTCCATAATAAAGTCAAGCCAACCATTGCTCTATATGAGGGAATGGGTCTTAGTCGGGAGGAGTTAGTCCCAATGCTAATATCACGGCCGACATTGATCCCAAGAACTACATTTAACGACGAGAAGATGGAGTATATACGGAAAACTCGACTGTCAAATGAGTCCAGGATGTATAAGTATGTTGTGACACTCATTGGCATTTCACGCCTGGAAACTATCAGCGAGAAAGTGGCAAATTTTGAAAAGTTTGGTTTCTCAGAAGATGAGATTTTCGGCCTTTTGGGAAGGTCTCCCATAGTGTTTACTCTTTCAGTGGATAAGGTCCAGAGGAACATGACTTTCGTTTTAGGACAAATGAAACTTCCTGCTACAGTGATTCTTGAGCACCCATTTTTGCTGTACATGAATCTGGAGGCTGCTTTGAAGCCGCGAGTATGTCTTGCAGGAAAAATTGAGGATATGGATCTTGATGTGCAAATTAAAGGACCTAAGTTGCTGACGGCATTGAGAATGACAGAGAAAAGATTTCTGAAGGCATTTGTTAATTGTCACCCAAAGGATGTTGCTGATGAATTGATGGAGTACTATACAAAAGCAAAGGGTGTGAAGCGATTGGCAGAAGCCTCAAAGAAGAAATTGTATGAAGGCTTTCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

384

Amino Acids

44.29

Weight (kDa)

9.15

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 68 - 142 2.4e-11 mTERF
mTERF PF02536 139 - 342 1.5e-31 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 255
AccBSI CCGCTC 2 cut(s) 65, 409
AccII CGCG 1 cut(s) 925
AciI CCGC 3 cut(s) 63, 409, 923
AclWI GGATC 3 cut(s) 445, 586, 966
AcoI YGGCCR 1 cut(s) 581
AcsI RAATTY 1 cut(s) 730
AcuI CTGAAG 2 cut(s) 278, 1046
AcyI GRCGYC 1 cut(s) 256
AfaI GTAC 2 cut(s) 896, 1079
AfiI CCNNNNNNNGG 2 cut(s) 151, 468
AgsI TTSAA 5 cut(s) 40, 301, 349, 737, 919
AjnI CCWGG 2 cut(s) 659, 702
AluBI AGCT 4 cut(s) 43, 247, 292, 343
AluI AGCT 4 cut(s) 43, 247, 292, 343
Alw21I GWGCWC 2 cut(s) 123, 882
Alw26I GTCTC 2 cut(s) 483, 789
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 3 cut(s) 445, 586, 966
AoxI GGCC 3 cut(s) 260, 581, 769
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 911
ApoI RAATTY 1 cut(s) 730
Asp700I GAANNNNTTC 3 cut(s) 248, 450, 1143
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 817, 980
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 1037
AvaII GGWCC 2 cut(s) 817, 980
BaeGI GKGCMC 1 cut(s) 123
BanI GGYRCC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 2 cut(s) 123, 882
BbvI GCAGC 1 cut(s) 898
BccI CCATC 2 cut(s) 616, 1066
BceAI ACGGC 2 cut(s) 596, 1011
BciT130I CCWGG 2 cut(s) 661, 704
BclI TGATCA 2 cut(s) 354, 391
BcnI CCSGG 1 cut(s) 370
BcoDI GTCTC 2 cut(s) 483, 789
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 2 cut(s) 198, 864
BfoI RGCGCY 1 cut(s) 259
BisI GCNGC 4 cut(s) 63, 410, 912, 923
BlsI GCNGC 4 cut(s) 64, 411, 913, 924
BmcAI AGTACT 1 cut(s) 1079
Bme1390I CCNGG 3 cut(s) 370, 661, 704
Bme18I GGWCC 2 cut(s) 817, 980
BmgT120I GGNCC 2 cut(s) 817, 980
BmiI GGNNCC 2 cut(s) 257, 473
BmrFI CCNGG 3 cut(s) 370, 661, 704
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 177
BpmI CTGGAG 2 cut(s) 230, 926
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 896
BpuMI CCSGG 1 cut(s) 370
BsaBI GATNNNNATC 1 cut(s) 957
BsaHI GRCGYC 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 789
BsaJI CCNNGG 1 cut(s) 368
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 468
Bse118I RCCGGY 1 cut(s) 258
Bse3DI GCAATG 2 cut(s) 394, 519
Bse8I GATNNNNATC 1 cut(s) 957
BseBI CCWGG 2 cut(s) 661, 704
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 2 cut(s) 669, 1060
BseJI GATNNNNATC 1 cut(s) 957
BseLI CCNNNNNNNGG 2 cut(s) 151, 468
BseMI GCAATG 2 cut(s) 394, 519
BseMII CTCAG 4 cut(s) 164, 330, 391, 765
BseRI GAGGAG 1 cut(s) 569
BseSI GKGCMC 1 cut(s) 123
BseX3I CGGCCG 1 cut(s) 581
BseXI GCAGC 1 cut(s) 898
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 925
Bsh1285I CGRYCG 1 cut(s) 584
BshFI GGCC 3 cut(s) 262, 583, 771
BshNI GGYRCC 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 584
BsiHKAI GWGCWC 2 cut(s) 123, 882
BsiSI CCGG 2 cut(s) 259, 370
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 2 cut(s) 151, 468
BsmAI GTCTC 2 cut(s) 483, 789
BsmBI CGTCTC 1 cut(s) 483
BsmFI GGGAC 1 cut(s) 548
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 3 cut(s) 262, 583, 771
Bso31I GGTCTC 1 cut(s) 789
Bsp1286I GDGCHC 2 cut(s) 123, 882
Bsp1407I TGTACA 1 cut(s) 894
Bsp143I GATC 6 cut(s) 354, 391, 437, 486, 591, 958
BspACI CCGC 3 cut(s) 63, 409, 923
BspANI GGCC 3 cut(s) 262, 583, 771
BspCNI CTCAG 4 cut(s) 163, 331, 390, 764
BspFNI CGCG 1 cut(s) 925
BspLI GGNNCC 2 cut(s) 257, 473
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 3 cut(s) 445, 586, 966
BspT107I GGYRCC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 789
BsrBI CCGCTC 2 cut(s) 65, 409
BsrDI GCAATG 2 cut(s) 394, 519
BsrFI RCCGGY 1 cut(s) 258
BsrGI TGTACA 1 cut(s) 894
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 6 cut(s) 354, 391, 437, 486, 591, 958
BssNI GRCGYC 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 661, 704
Bst4CI ACNGT 4 cut(s) 94, 139, 648, 868
BstACI GRCGYC 1 cut(s) 256
BstAUI TGTACA 1 cut(s) 894
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 6 cut(s) 150, 339, 377, 545, 751, 984
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 669, 1060
BstFNI CGCG 1 cut(s) 925
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 6 cut(s) 357, 394, 440, 489, 594, 961
BstMAI GTCTC 2 cut(s) 483, 789
BstMBI GATC 6 cut(s) 354, 391, 437, 486, 591, 958
BstMCI CGRYCG 1 cut(s) 584
BstMWI GCNNNNNNNGC 2 cut(s) 253, 699
BstNI CCWGG 2 cut(s) 661, 704
BstSCI CCNGG 3 cut(s) 368, 659, 702
BstSFI CTRYAG 2 cut(s) 198, 864
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 1 cut(s) 925
BstV1I GCAGC 1 cut(s) 898
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 958
BstYI RGATCY 1 cut(s) 958
BstZI CGGCCG 1 cut(s) 581
BsuRI GGCC 3 cut(s) 262, 583, 771
BtsCI GGATG 2 cut(s) 669, 1060
BtsIMutI CAGTG 3 cut(s) 385, 813, 873
Cac8I GCNNGC 1 cut(s) 260
CfoI GCGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 817, 980
Csp6I GTAC 2 cut(s) 895, 1078
CviAII CATG 3 cut(s) 413, 829, 898
CviQI GTAC 2 cut(s) 895, 1078
DdeI CTNAG 6 cut(s) 150, 339, 377, 545, 751, 984
DinI GGCGCC 1 cut(s) 257
DpnI GATC 6 cut(s) 356, 393, 439, 488, 593, 960
DpnII GATC 6 cut(s) 354, 391, 437, 486, 591, 958
EaeI YGGCCR 1 cut(s) 581
EagI CGGCCG 1 cut(s) 581
EclXI CGGCCG 1 cut(s) 581
Eco31I GGTCTC 1 cut(s) 789
Eco47I GGWCC 2 cut(s) 817, 980
Eco52I CGGCCG 1 cut(s) 581
Eco57I CTGAAG 2 cut(s) 278, 1046
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 980
EcoRII CCWGG 2 cut(s) 659, 702
EgeI GGCGCC 1 cut(s) 257
EheI GGCGCC 1 cut(s) 257
Esp3I CGTCTC 1 cut(s) 483
FaeI CATG 3 cut(s) 416, 832, 901
FaqI GGGAC 1 cut(s) 548
FatI CATG 3 cut(s) 412, 828, 897
FbaI TGATCA 2 cut(s) 354, 391
Fnu4HI GCNGC 4 cut(s) 63, 410, 912, 923
FokI GGATG 2 cut(s) 676, 1067
Fsp4HI GCNGC 4 cut(s) 63, 410, 912, 923
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 257
GluI GCNGC 4 cut(s) 63, 410, 912, 923
GsuI CTGGAG 2 cut(s) 230, 926
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 3 cut(s) 262, 583, 771
HapII CCGG 2 cut(s) 259, 370
HhaI GCGC 1 cut(s) 258
Hin1I GRCGYC 1 cut(s) 256
Hin1II CATG 3 cut(s) 416, 832, 901
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 4 cut(s) 29, 656, 871, 901
HpaII CCGG 2 cut(s) 259, 370
HphI GGTGA 1 cut(s) 1037
Hpy166II GTNNAC 2 cut(s) 121, 798
Hpy188I TCNGA 3 cut(s) 387, 754, 1026
Hpy188III TCNNGA 9 cut(s) 21, 152, 209, 484, 551, 820, 875, 905, 962
Hpy8I GTNNAC 2 cut(s) 121, 798
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 3 cut(s) 774, 1021, 1133
HpyCH4III ACNGT 4 cut(s) 94, 139, 648, 868
HpyCH4V TGCA 6 cut(s) 48, 121, 200, 335, 938, 970
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 699
HpyF3I CTNAG 6 cut(s) 150, 339, 377, 545, 751, 984
Hsp92I GRCGYC 1 cut(s) 256
Hsp92II CATG 3 cut(s) 416, 832, 901
HspAI GCGC 1 cut(s) 256
KasI GGCGCC 1 cut(s) 255
KroI GCCGGC 1 cut(s) 258
KroNI GCCGGC 1 cut(s) 260
Ksp22I TGATCA 2 cut(s) 354, 391
Kzo9I GATC 6 cut(s) 354, 391, 437, 486, 591, 958
Lsp1109I GCAGC 1 cut(s) 898
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 679, 1043
MalI GATC 6 cut(s) 356, 393, 439, 488, 593, 960
MbiI CCGCTC 2 cut(s) 65, 409
MboI GATC 6 cut(s) 354, 391, 437, 486, 591, 958
MboII GAAGA 6 cut(s) 167, 182, 361, 631, 767, 1138
MfeI CAATTG 1 cut(s) 358
MflI RGATCY 1 cut(s) 958
MhlI GDGCHC 2 cut(s) 123, 882
MluCI AATT 8 cut(s) 358, 428, 730, 945, 972, 1039, 1067, 1130
Mly113I GGCGCC 1 cut(s) 256
MlyI GAGTC 1 cut(s) 665
MnlI CCTC 8 cut(s) 155, 205, 526, 547, 816, 901, 943, 1129
MroNI GCCGGC 1 cut(s) 258
MroXI GAANNNNTTC 3 cut(s) 248, 450, 1143
MseI TTAA 6 cut(s) 110, 269, 305, 609, 975, 1038
MspI CCGG 2 cut(s) 259, 370
MspR9I CCNGG 3 cut(s) 370, 661, 704
MunI CAATTG 1 cut(s) 358
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 2 cut(s) 661, 704
MvnI CGCG 1 cut(s) 925
MwoI GCNNNNNNNGC 2 cut(s) 253, 699
NaeI GCCGGC 1 cut(s) 260
NarI GGCGCC 1 cut(s) 256
NciI CCSGG 1 cut(s) 370
NdeII GATC 6 cut(s) 354, 391, 437, 486, 591, 958
NgoMIV GCCGGC 1 cut(s) 258
NlaIII CATG 3 cut(s) 416, 832, 901
NlaIV GGNNCC 2 cut(s) 257, 473
NmuCI GTSAC 2 cut(s) 679, 1043
PcsI WCGNNNNNNNCGW 1 cut(s) 640
PctI GAATGC 1 cut(s) 280
PdiI GCCGGC 1 cut(s) 260
PdmI GAANNNNTTC 3 cut(s) 248, 450, 1143
PfeI GAWTC 3 cut(s) 29, 871, 901
PfoI TCCNGGA 1 cut(s) 659
PkrI GCNGC 4 cut(s) 64, 411, 913, 924
PleI GAGTC 1 cut(s) 664
PluTI GGCGCC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 664
PpuMI RGGWCCY 1 cut(s) 980
Psp5II RGGWCCY 1 cut(s) 980
Psp6I CCWGG 2 cut(s) 659, 702
PspGI CCWGG 2 cut(s) 659, 702
PspN4I GGNNCC 2 cut(s) 257, 473
PspPI GGNCC 2 cut(s) 817, 980
PspPPI RGGWCCY 1 cut(s) 980
PstI CTGCAG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 958
RsaI GTAC 2 cut(s) 896, 1079
RsaNI GTAC 2 cut(s) 895, 1078
SaqAI TTAA 6 cut(s) 110, 269, 305, 609, 975, 1038
SatI GCNGC 4 cut(s) 63, 410, 912, 923
Sau3AI GATC 6 cut(s) 354, 391, 437, 486, 591, 958
Sau96I GGNCC 2 cut(s) 817, 980
ScaI AGTACT 1 cut(s) 1079
SchI GAGTC 1 cut(s) 665
ScrFI CCNGG 3 cut(s) 370, 661, 704
SduI GDGCHC 2 cut(s) 123, 882
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 2 cut(s) 198, 864
SfoI GGCGCC 1 cut(s) 257
SinI GGWCC 2 cut(s) 817, 980
SmlI CTYRAG 1 cut(s) 875
SmoI CTYRAG 1 cut(s) 875
Sse9I AATT 8 cut(s) 358, 428, 730, 945, 972, 1039, 1067, 1130
SsiI CCGC 3 cut(s) 63, 409, 923
SspDI GGCGCC 1 cut(s) 255
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 3 cut(s) 368, 659, 702
TaaI ACNGT 4 cut(s) 94, 139, 648, 868
TaqI TCGA 4 cut(s) 67, 134, 242, 643
TasI AATT 8 cut(s) 358, 428, 730, 945, 972, 1039, 1067, 1130
TatI WGTACW 2 cut(s) 894, 1077
TauI GCSGC 3 cut(s) 65, 412, 925
TfiI GAWTC 3 cut(s) 29, 871, 901
Tru1I TTAA 6 cut(s) 110, 269, 305, 609, 975, 1038
Tru9I TTAA 6 cut(s) 110, 269, 305, 609, 975, 1038
TscAI CASTG 3 cut(s) 385, 813, 873
TseFI GTSAC 2 cut(s) 679, 1043
TseI GCWGC 1 cut(s) 911
Tsp45I GTSAC 2 cut(s) 679, 1043
TspDTI ATGAA 6 cut(s) 29, 440, 866, 914, 1080, 1152
TspGWI ACGGA 1 cut(s) 649
TspRI CASTG 3 cut(s) 385, 813, 873
VneI GTGCAC 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 817, 980
XagI CCTNNNNNAGG 1 cut(s) 149
XapI RAATTY 1 cut(s) 730
XbaI TCTAGA 1 cut(s) 20
XmnI GAANNNNTTC 3 cut(s) 248, 450, 1143
XspI CTAG 1 cut(s) 21
ZrmI AGTACT 1 cut(s) 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.