Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005036

Physical Location & Seq

Genomic Coordinates Reverse (-)

7439145 .. 7441211

Gene Structure 2067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G134700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAAATCCACATTTGGGTCCTTACTTAAGCTCCGCATCTTATTGCCCACCTCGCCAAATTTCTTATTTTTGCCCAAGATTCTGCTCCCAACAACTTGGTTTATTTTCACACCCGCCACCTATTCGACGGTTTGCCACACCGAGGAAGACAGTGTAGGAGAAGACATTGAAGACCAATCCAAGACCTCTGTGCAAATTATGAAGCAATTCGGTTGTACTGATACTGAAATATCTAATATTTTCACTCGGGGGCCTTTTCTACTGAAAGCTGACGCTAACCAGCTTCAGTCCAAACTCGAACGTTTAACGTGGTTGGGCATCAGTGCTCCTGAGCTTGCGAAGATTATCAATGATCGGCCCCGGTTTCTCACTTGTCGAGTTAACCATTGCTTTGATGAACGGGTTGAGTTCTTGATGACATTGTTTGGATCAAAGGAAGTGCTTGCCAAAGCCATATTAAGGAACCCGTCTTTCTTGACCCATGACCTTCACAAGAAAATCAAACCGGTCATTGCGCTATATGAAGGAATTGGTCTTAGTATGCCAGACTTGATCCAGATGCTTCTATCACGGCCTACATTGATACCAAGAACTTCCTTTAATGAAGAAAAGATGGAATATATAGGAAAAACCGGAGTTCCAAATGATTCCAGAATGTTCAAGTATGTTGTTACGATAATTGGCGTTTCGCGCCTTGAAACTATCCGTCAGAAAGTTGCAAACTTGGAGAAGTTTGGTTTCTCAGAAGATGAGGTTTTTCTCTTTTTTGGGAAGTCTCCGTTTGTCTTGACACTATCAGTCGATAAGGTTCAGAGGAACATGACTTTCATTTTAGGAGAAATGAAGCTTCCTGCTACTACAGTTCTTGAGCACCCAAGTTTGCTATTCAAGAATCTGGAGGATGTGTTGAAGCCACGAGTACTTCTTGCCAGGAAGGTGCAGGAAATGGGTCTTGATTTACAGATTAATGGCCCTATGATGGTGAGGGCAATGCGGATGACGGAGAGGAGGTTTTTGAAAGTATTTGTTAATTGTCACCCAAAGGATGCTGCTGATGAATTGATTGAGTACTACAAAAATGTGAAGGGTGTTAAGCGATTGGCAGAAGCCTCAAAGAAGAACTTCCAAAAAGGATTTCCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

382

Amino Acids

43.63

Weight (kDa)

9.32

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79220
fragaria_vesca	FvH4_3g15040 FvH4_3g15050
malus_domestica	MD10G1208300.v1.1 MD10G1208400.v1.1
prunus_persica	Prupe.4G134600_v2.0.a1 Prupe.4G134700_v2.0.a1
pyrus_communis	pycom10g17720
rosa_chinensis	RchiOBHm_Chr5g0024801 RchiOBHm_Chr5g0024811
rosa_laevigata	RLG00000032815 RLG00000032816
rosa_multiflora	Rmu_sc0001757.1_g000014 Rmu_sc0001757.1_g000016 Rmu_sc0009744.1_g000008 Rmu_sc0016384.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054570 Rroxscaffold_1G00054580
rosa_rugosa	Rorug05G0084500 Rorug05G0084600
rosa_samantha	Rh5AG176300 Rh5AG176400 Rh5BG174000 Rh5BG174100 Rh5CG191000 Rh5CG191100 Rh5DG175600 Rh5DG175700
rosa_wichuraiana	Rw5G015980 Rw5G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	691
AciI	CCGC	3 cut(s)	34, 114, 994
AclI	AACGTT	1 cut(s)	301
AclWI	GGATC	2 cut(s)	436, 547
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	3 cut(s)	217, 921, 1070
AfiI	CCNNNNNNNGG	4 cut(s)	15, 142, 459, 979
AflII	CTTAAG	1 cut(s)	26
AgeI	ACCGGT	1 cut(s)	505
AgsI	TTSAA	6 cut(s)	170, 661, 698, 889, 910, 1018
AjnI	CCWGG	1 cut(s)	929
AjuI	GAANNNNNNNTTGG	1 cut(s)	1119
AluBI	AGCT	5 cut(s)	31, 269, 283, 334, 847
AluI	AGCT	5 cut(s)	31, 269, 283, 334, 847
Alw21I	GWGCWC	2 cut(s)	328, 873
Alw26I	GTCTC	1 cut(s)	780
AlwI	GGATC	2 cut(s)	436, 547
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	4 cut(s)	251, 356, 572, 970
ApeKI	GCWGC	1 cut(s)	1049
ApoI	RAATTY	1 cut(s)	58
AseI	ATTAAT	1 cut(s)	966
AsiGI	ACCGGT	1 cut(s)	505
Asp700I	GAANNNNTTC	2 cut(s)	206, 1121
AspLEI	GCGC	2 cut(s)	517, 693
AspS9I	GGNCC	4 cut(s)	18, 251, 357, 971
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	994, 1028
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	18
BauI	CACGAG	1 cut(s)	915
BbsI	GAAGAC	3 cut(s)	153, 168, 177
Bbv12I	GWGCWC	2 cut(s)	328, 873
BbvI	GCAGC	1 cut(s)	1036
BccI	CCATC	2 cut(s)	607, 973
BceAI	ACGGC	1 cut(s)	587
BciT130I	CCWGG	1 cut(s)	931
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	780
BfmI	CTRYAG	1 cut(s)	858
BfrI	CTTAAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	1050
BlsI	GCNGC	1 cut(s)	1051
BmcAI	AGTACT	2 cut(s)	921, 1070
Bme1390I	CCNGG	2 cut(s)	361, 931
Bme18I	GGWCC	1 cut(s)	18
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	4 cut(s)	18, 251, 357, 971
BmiI	GGNNCC	4 cut(s)	19, 252, 359, 464
BmrFI	CCNGG	2 cut(s)	361, 931
BmsI	GCATC	4 cut(s)	45, 327, 549, 1036
BpiI	GAAGAC	3 cut(s)	153, 168, 177
BpmI	CTGGAG	1 cut(s)	917
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	887
BpuMI	CCSGG	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	141, 359
BsaWI	WCCGGW	2 cut(s)	505, 632
BsaXI	ACNNNNNCTCC	6 cut(s)	15, 45, 890, 920, 995, 1025
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 142, 459, 979
Bse118I	RCCGGY	1 cut(s)	505
Bse3DI	GCAATG	3 cut(s)	385, 510, 996
BseBI	CCWGG	1 cut(s)	931
BseDI	CCNNGG	2 cut(s)	141, 359
BseGI	GGATG	3 cut(s)	907, 1002, 1051
BseLI	CCNNNNNNNGG	4 cut(s)	15, 142, 459, 979
BseMI	GCAATG	3 cut(s)	385, 510, 996
BseMII	CTCAG	2 cut(s)	321, 756
BseRI	GAGGAG	1 cut(s)	1021
BseXI	GCAGC	1 cut(s)	1036
BsgI	GTGCAG	1 cut(s)	959
Bsh1236I	CGCG	1 cut(s)	691
BshFI	GGCC	4 cut(s)	253, 358, 574, 972
BshTI	ACCGGT	1 cut(s)	505
BsiHKAI	GWGCWC	2 cut(s)	328, 873
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	361, 506, 633
BslI	CCNNNNNNNGG	4 cut(s)	15, 142, 459, 979
BsmAI	GTCTC	1 cut(s)	780
BsnI	GGCC	4 cut(s)	253, 358, 574, 972
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	328, 873
Bsp143I	GATC	3 cut(s)	352, 428, 552
BspACI	CCGC	3 cut(s)	34, 114, 994
BspANI	GGCC	4 cut(s)	253, 358, 574, 972
BspCNI	CTCAG	2 cut(s)	322, 755
BspFNI	CGCG	1 cut(s)	691
BspLI	GGNNCC	4 cut(s)	19, 252, 359, 464
BspPI	GGATC	2 cut(s)	436, 547
BspTI	CTTAAG	1 cut(s)	26
BsrDI	GCAATG	3 cut(s)	385, 510, 996
BsrFI	RCCGGY	1 cut(s)	505
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	2 cut(s)	141, 359
BssMI	GATC	3 cut(s)	352, 428, 552
BssSI	CACGAG	1 cut(s)	915
Bst2BI	CACGAG	1 cut(s)	915
Bst2UI	CCWGG	1 cut(s)	931
Bst4CI	ACNGT	3 cut(s)	130, 152, 862
BstAFI	CTTAAG	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	336, 444
BstDEI	CTNAG	3 cut(s)	330, 536, 742
BstF5I	GGATG	3 cut(s)	907, 1002, 1051
BstFNI	CGCG	1 cut(s)	691
BstHHI	GCGC	2 cut(s)	517, 693
BstKTI	GATC	3 cut(s)	355, 431, 555
BstMAI	GTCTC	1 cut(s)	780
BstMBI	GATC	3 cut(s)	352, 428, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 690
BstNI	CCWGG	1 cut(s)	931
BstSCI	CCNGG	2 cut(s)	359, 929
BstSFI	CTRYAG	1 cut(s)	858
BstUI	CGCG	1 cut(s)	691
BstV1I	GCAGC	1 cut(s)	1036
BstV2I	GAAGAC	3 cut(s)	153, 168, 177
BstXI	CCANNNNNNTGG	1 cut(s)	96
BsuRI	GGCC	4 cut(s)	253, 358, 574, 972
BtsCI	GGATG	3 cut(s)	907, 1002, 1051
BtsIMutI	CAGTG	2 cut(s)	157, 328
Cac8I	GCNNGC	2 cut(s)	336, 444
CfoI	GCGC	2 cut(s)	517, 693
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	4 cut(s)	18, 251, 357, 971
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	3 cut(s)	216, 920, 1069
CspAI	ACCGGT	1 cut(s)	505
CviAII	CATG	2 cut(s)	482, 820
CviQI	GTAC	3 cut(s)	216, 920, 1069
DdeI	CTNAG	3 cut(s)	330, 536, 742
DpnI	GATC	3 cut(s)	354, 430, 554
DpnII	GATC	3 cut(s)	352, 428, 552
Eco47I	GGWCC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	246
EcoO109I	RGGNCCY	2 cut(s)	18, 251
EcoRII	CCWGG	1 cut(s)	929
FaeI	CATG	2 cut(s)	485, 823
FalI	AAGNNNNNCTT	2 cut(s)	1106, 1138
FatI	CATG	2 cut(s)	481, 819
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	1050
FokI	GGATG	3 cut(s)	914, 1009, 1058
Fsp4HI	GCNGC	1 cut(s)	1050
GlaI	GCGC	2 cut(s)	516, 692
GluI	GCNGC	1 cut(s)	1050
GsuI	CTGGAG	1 cut(s)	917
HaeIII	GGCC	4 cut(s)	253, 358, 574, 972
HapII	CCGG	3 cut(s)	361, 506, 633
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	2 cut(s)	517, 693
Hin1II	CATG	2 cut(s)	485, 823
Hin6I	GCGC	2 cut(s)	515, 691
HinP1I	GCGC	2 cut(s)	515, 691
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	845
HinfI	GANTC	3 cut(s)	79, 647, 892
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	3 cut(s)	361, 506, 633
HphI	GGTGA	2 cut(s)	994, 1028
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	4 cut(s)	711, 745, 813, 1145
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	4 cut(s)	497, 518, 928, 1078
HpyCH4III	ACNGT	3 cut(s)	130, 152, 862
HpyCH4IV	ACGT	2 cut(s)	301, 308
HpyCH4V	TGCA	3 cut(s)	193, 719, 940
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 690
HpyF3I	CTNAG	3 cut(s)	330, 536, 742
HpySE526I	ACGT	2 cut(s)	301, 308
Hsp92II	CATG	2 cut(s)	485, 823
HspAI	GCGC	2 cut(s)	515, 691
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	352, 428, 552
LmnI	GCTCC	3 cut(s)	36, 90, 331
Lsp1109I	GCAGC	1 cut(s)	1036
LweI	GCATC	4 cut(s)	45, 327, 549, 1036
MaeII	ACGT	2 cut(s)	301, 308
MaeIII	GTNAC	2 cut(s)	670, 1034
MalI	GATC	3 cut(s)	354, 430, 554
MboI	GATC	3 cut(s)	352, 428, 552
MboII	GAAGA	7 cut(s)	158, 173, 182, 352, 617, 758, 1129
MhlI	GDGCHC	2 cut(s)	328, 873
MluCI	AATT	7 cut(s)	58, 195, 206, 528, 678, 1030, 1058
MroXI	GAANNNNTTC	2 cut(s)	206, 1121
MseI	TTAA	8 cut(s)	27, 305, 381, 458, 600, 966, 1029, 1092
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	3 cut(s)	361, 506, 633
MspR9I	CCNGG	2 cut(s)	361, 931
MvaI	CCWGG	1 cut(s)	931
MvnI	CGCG	1 cut(s)	691
MwoI	GCNNNNNNNGC	2 cut(s)	52, 690
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	3 cut(s)	352, 428, 552
NlaIII	CATG	2 cut(s)	485, 823
NlaIV	GGNNCC	4 cut(s)	19, 252, 359, 464
NmuCI	GTSAC	1 cut(s)	1034
PdmI	GAANNNNTTC	2 cut(s)	206, 1121
PfeI	GAWTC	3 cut(s)	79, 647, 892
PinAI	ACCGGT	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	1051
PpuMI	RGGWCCY	1 cut(s)	18
PshBI	ATTAAT	1 cut(s)	966
Psp1406I	AACGTT	1 cut(s)	301
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	929
PspGI	CCWGG	1 cut(s)	929
PspN4I	GGNNCC	4 cut(s)	19, 252, 359, 464
PspPI	GGNCC	4 cut(s)	18, 251, 357, 971
PspPPI	RGGWCCY	1 cut(s)	18
RsaI	GTAC	3 cut(s)	217, 921, 1070
RsaNI	GTAC	3 cut(s)	216, 920, 1069
SaqAI	TTAA	8 cut(s)	27, 305, 381, 458, 600, 966, 1029, 1092
SatI	GCNGC	1 cut(s)	1050
Sau3AI	GATC	3 cut(s)	352, 428, 552
Sau96I	GGNCC	4 cut(s)	18, 251, 357, 971
ScaI	AGTACT	2 cut(s)	921, 1070
ScrFI	CCNGG	2 cut(s)	361, 931
SduI	GDGCHC	2 cut(s)	328, 873
SfaNI	GCATC	4 cut(s)	45, 327, 549, 1036
SfcI	CTRYAG	1 cut(s)	858
SinI	GGWCC	1 cut(s)	18
SmlI	CTYRAG	2 cut(s)	26, 866
SmoI	CTYRAG	2 cut(s)	26, 866
Sse9I	AATT	7 cut(s)	58, 195, 206, 528, 678, 1030, 1058
SsiI	CCGC	3 cut(s)	34, 114, 994
SspI	AATATT	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	359, 929
TaaI	ACNGT	3 cut(s)	130, 152, 862
TaiI	ACGT	2 cut(s)	304, 311
TaqI	TCGA	4 cut(s)	125, 297, 376, 801
TasI	AATT	7 cut(s)	58, 195, 206, 528, 678, 1030, 1058
TatI	WGTACW	3 cut(s)	215, 919, 1068
TfiI	GAWTC	3 cut(s)	79, 647, 892
Tru1I	TTAA	8 cut(s)	27, 305, 381, 458, 600, 966, 1029, 1092
Tru9I	TTAA	8 cut(s)	27, 305, 381, 458, 600, 966, 1029, 1092
TscAI	CASTG	2 cut(s)	157, 328
TseFI	GTSAC	1 cut(s)	1034
TseI	GCWGC	1 cut(s)	1049
Tsp45I	GTSAC	1 cut(s)	1034
TspDTI	ATGAA	8 cut(s)	17, 215, 411, 537, 618, 817, 857, 1071
TspGWI	ACGGA	3 cut(s)	695, 768, 1016
TspRI	CASTG	2 cut(s)	157, 328
Vha464I	CTTAAG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	18
VspI	ATTAAT	1 cut(s)	966
XapI	RAATTY	1 cut(s)	58
XmnI	GAANNNNTTC	2 cut(s)	206, 1121
ZrmI	AGTACT	2 cut(s)	921, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.