Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005036

Physical Location & Seq

Genomic Coordinates Reverse (-)

9319331 .. 9320473

Gene Structure 1143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAAATCTAGAGTTGGTTCTCTATTCAAGCTCTGCATAGTGTTTCCTGTGTCGTGCAATCGCTCTCCTATGCCCAAATCTTCTCTCCCATCCTGTTTAAGTTTCGTGCACACCACCTTTTCGACAGTTTGCCTCACCCAGGAAGAAAGCATAGTTGAAGACACTTTTGACCAGCCAAAGACATCTGCAGAAGTTCTGGAGAAATGGGGTTGTTGTGAAGCTGACATATCGCAGCTGTTCAAGCGGCGGCCTGCTTTAAGGAAAGCTGACCTTAACCAGCTTCAGTACAAGCTAAACCTTCTTAGTGAACTGGGTATCACTGCGCCTGATCTTTTGAAGATCATCGACTGTCGCCCCCGGTTATTGAGTCTTCGCATTGATCATTGCTTTGATGAGCGGCATAAGTTCTTTATGAAAATATTTGGGTCTAGGGAACTGCTTGTCAAAGCCATTGTAAGGAACCCGTCTCTCTTGATTTATGACTTCCATAATAAGGTCAAGCCGACCATTGCTCTTTATGAGGGAATGGGTCTAAGCCGAGAGGAGTTGGTCCCAATGCTACTATCGAGGCCGACATTGATCCCTAGAACTGTATTTAACGATGAGAAGGTGGAGTATATACAGAAAACTGGACTTTCGAATAAGTCCAGGATGTATAAGTATGTTGTAACACTCATTGGCATTTCACGCCTTGAAACTATCAGTGAGAGAATATCAAATTTTGAAAAGTTTGGTTTCTCAGAAGATGAGATCTTCAGCCTTATGGGAAGGTCTCCCTTAGTGTTTTTCCTTTCGGTGGATAAGGTTCAGAGGAACATGACTTTCGTGTTAGGACAAATGAAACTTCCTGCTACAGTGATTCTTGCGCACCCGTTTTTGCTGTACATGAATCTGGAGACTGCTTTGAAGCCACGAGTATGTCTTGCAGGAAAAATCGAGGATATGGGTCTTGATGAGCAAATTAAAGGACCTAAGTTGCTGACGGCATTGAGAATGACAGAGAAGAGATTTGTGAAGGCATTCATTAATTGTCACCCGAAGGATGTTGCTGATCAATTGATGGAGTACTATACAAAAGCAAAGGGTGTGAAGCGATTGGCAGAAGCCTCAAAGAAGAAATCGAATGAAGGATTTCCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

381

Amino Acids

43.5

Weight (kDa)

9.3

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	64 - 142	6.3e-11	mTERF
mTERF	PF02536	135 - 337	3.9e-32	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79220
fragaria_vesca	FvH4_3g15040 FvH4_3g15050
malus_domestica	MD10G1208300.v1.1 MD10G1208400.v1.1
prunus_persica	Prupe.4G134600_v2.0.a1 Prupe.4G134700_v2.0.a1
pyrus_communis	pycom10g17720
rosa_chinensis	RchiOBHm_Chr5g0024801 RchiOBHm_Chr5g0024811
rosa_laevigata	RLG00000032815 RLG00000032816
rosa_multiflora	Rmu_sc0001757.1_g000014 Rmu_sc0001757.1_g000016 Rmu_sc0009744.1_g000008 Rmu_sc0016384.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054570 Rroxscaffold_1G00054580
rosa_rugosa	Rorug05G0084500 Rorug05G0084600
rosa_samantha	Rh5AG176300 Rh5AG176400 Rh5BG174000 Rh5BG174100 Rh5CG191000 Rh5CG191100 Rh5DG175600 Rh5DG175700
rosa_wichuraiana	Rw5G015980 Rw5G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	867
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	3 cut(s)	244, 247, 397
AclWI	GGATC	1 cut(s)	574
AcsI	RAATTY	1 cut(s)	718
AcuI	CTGAAG	2 cut(s)	266, 739
AfaI	GTAC	3 cut(s)	287, 884, 1067
AfiI	CCNNNNNNNGG	4 cut(s)	139, 456, 493, 796
AgsI	TTSAA	7 cut(s)	28, 158, 241, 337, 695, 725, 907
AjnI	CCWGG	2 cut(s)	138, 647
AluBI	AGCT	6 cut(s)	31, 221, 235, 266, 280, 292
AluI	AGCT	6 cut(s)	31, 221, 235, 266, 280, 292
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	3 cut(s)	471, 777, 890
Alw44I	GTGCAC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	574
AoxI	GGCC	2 cut(s)	248, 569
ApaLI	GTGCAC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	718
AseI	ATTAAT	1 cut(s)	1026
Asp700I	GAANNNNTTC	2 cut(s)	1019, 1131
AspLEI	GCGC	2 cut(s)	325, 868
AspS9I	GGNCC	2 cut(s)	550, 968
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	127, 1025
AsuII	TTCGAA	1 cut(s)	638
AvaII	GGWCC	2 cut(s)	550, 968
BaeGI	GKGCMC	1 cut(s)	111
BauI	CACGAG	1 cut(s)	912
BbsI	GAAGAC	2 cut(s)	165, 362
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	97, 1054
BceAI	ACGGC	1 cut(s)	999
BciT130I	CCWGG	2 cut(s)	140, 649
BclI	TGATCA	2 cut(s)	379, 1051
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	3 cut(s)	471, 777, 890
BfaI	CTAG	3 cut(s)	9, 429, 585
BfmI	CTRYAG	2 cut(s)	186, 852
BglII	AGATCT	1 cut(s)	750
BisI	GCNGC	4 cut(s)	233, 245, 248, 398
BlsI	GCNGC	4 cut(s)	234, 246, 249, 399
BmcAI	AGTACT	1 cut(s)	1067
Bme1390I	CCNGG	3 cut(s)	140, 358, 649
Bme18I	GGWCC	2 cut(s)	550, 968
BmgT120I	GGNCC	2 cut(s)	550, 968
BmiI	GGNNCC	2 cut(s)	461, 552
BmrFI	CCNGG	3 cut(s)	140, 358, 649
BmrI	ACTGGG	1 cut(s)	320
BmuI	ACTGGG	1 cut(s)	320
BpiI	GAAGAC	2 cut(s)	165, 362
BpmI	CTGGAG	2 cut(s)	218, 914
Bpu14I	TTCGAA	1 cut(s)	638
BpuMI	CCSGG	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	138, 356
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 456, 493, 796
Bse1I	ACTGG	2 cut(s)	315, 634
Bse3DI	GCAATG	2 cut(s)	382, 507
BseBI	CCWGG	2 cut(s)	140, 649
BseDI	CCNNGG	2 cut(s)	138, 356
BseGI	GGATG	3 cut(s)	89, 657, 1048
BseLI	CCNNNNNNNGG	4 cut(s)	139, 456, 493, 796
BseMI	GCAATG	2 cut(s)	382, 507
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	2 cut(s)	315, 634
BseRI	GAGGAG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	2 cut(s)	250, 571
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	4 cut(s)	139, 456, 493, 796
BsmAI	GTCTC	3 cut(s)	471, 777, 890
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	1019
BsnI	GGCC	2 cut(s)	250, 571
Bso31I	GGTCTC	1 cut(s)	777
Bsp119I	TTCGAA	1 cut(s)	638
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp1407I	TGTACA	1 cut(s)	882
Bsp143I	GATC	6 cut(s)	328, 339, 379, 579, 750, 1051
BspACI	CCGC	3 cut(s)	244, 247, 397
BspANI	GGCC	2 cut(s)	250, 571
BspCNI	CTCAG	1 cut(s)	752
BspLI	GGNNCC	2 cut(s)	461, 552
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	574
BspT104I	TTCGAA	1 cut(s)	638
BspTNI	GGTCTC	1 cut(s)	777
BsrBI	CCGCTC	1 cut(s)	397
BsrDI	GCAATG	2 cut(s)	382, 507
BsrGI	TGTACA	1 cut(s)	882
BsrI	ACTGG	2 cut(s)	315, 634
BssECI	CCNNGG	2 cut(s)	138, 356
BssMI	GATC	6 cut(s)	328, 339, 379, 579, 750, 1051
BssSI	CACGAG	1 cut(s)	912
Bst2BI	CACGAG	1 cut(s)	912
Bst2UI	CCWGG	2 cut(s)	140, 649
Bst4CI	ACNGT	4 cut(s)	127, 350, 592, 856
Bst6I	CTCTTC	1 cut(s)	998
BstAUI	TGTACA	1 cut(s)	882
BstBI	TTCGAA	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	5 cut(s)	302, 533, 739, 778, 972
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	3 cut(s)	89, 657, 1048
BstHHI	GCGC	2 cut(s)	325, 868
BstKTI	GATC	6 cut(s)	331, 342, 382, 582, 753, 1054
BstMAI	GTCTC	3 cut(s)	471, 777, 890
BstMBI	GATC	6 cut(s)	328, 339, 379, 579, 750, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 687
BstNI	CCWGG	2 cut(s)	140, 649
BstSCI	CCNGG	3 cut(s)	138, 356, 647
BstSFI	CTRYAG	2 cut(s)	186, 852
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	2 cut(s)	165, 362
BstX2I	RGATCY	1 cut(s)	750
BstYI	RGATCY	1 cut(s)	750
BsuRI	GGCC	2 cut(s)	250, 571
BtsCI	GGATG	3 cut(s)	89, 657, 1048
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	3 cut(s)	318, 709, 861
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	2 cut(s)	325, 868
Cfr13I	GGNCC	2 cut(s)	550, 968
Csp6I	GTAC	3 cut(s)	286, 883, 1066
CviAII	CATG	2 cut(s)	817, 886
CviQI	GTAC	3 cut(s)	286, 883, 1066
DdeI	CTNAG	5 cut(s)	302, 533, 739, 778, 972
DpnI	GATC	6 cut(s)	330, 341, 381, 581, 752, 1053
DpnII	GATC	6 cut(s)	328, 339, 379, 579, 750, 1051
Eam1104I	CTCTTC	1 cut(s)	998
EarI	CTCTTC	1 cut(s)	998
Eco31I	GGTCTC	1 cut(s)	777
Eco47I	GGWCC	2 cut(s)	550, 968
Eco57I	CTGAAG	2 cut(s)	266, 739
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	968
EcoRII	CCWGG	2 cut(s)	138, 647
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	2 cut(s)	820, 889
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	2 cut(s)	816, 885
FbaI	TGATCA	2 cut(s)	379, 1051
Fnu4HI	GCNGC	4 cut(s)	233, 245, 248, 398
FokI	GGATG	3 cut(s)	76, 664, 1055
Fsp4HI	GCNGC	4 cut(s)	233, 245, 248, 398
FspBI	CTAG	3 cut(s)	9, 429, 585
FspI	TGCGCA	1 cut(s)	867
GlaI	GCGC	2 cut(s)	324, 867
GluI	GCNGC	4 cut(s)	233, 245, 248, 398
GsuI	CTGGAG	2 cut(s)	218, 914
HaeIII	GGCC	2 cut(s)	250, 571
HapII	CCGG	1 cut(s)	358
HhaI	GCGC	2 cut(s)	325, 868
Hin1II	CATG	2 cut(s)	820, 889
Hin6I	GCGC	2 cut(s)	323, 866
HinP1I	GCGC	2 cut(s)	323, 866
HinfI	GANTC	3 cut(s)	367, 859, 889
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	2 cut(s)	127, 1025
Hpy166II	GTNNAC	2 cut(s)	109, 308
Hpy188I	TCNGA	2 cut(s)	742, 810
Hpy188III	TCNNGA	5 cut(s)	9, 197, 472, 893, 950
Hpy8I	GTNNAC	2 cut(s)	109, 308
HpyAV	CCTTC	6 cut(s)	308, 601, 762, 1009, 1033, 1121
HpyCH4III	ACNGT	4 cut(s)	127, 350, 592, 856
HpyCH4V	TGCA	5 cut(s)	36, 57, 109, 188, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 687
HpyF3I	CTNAG	5 cut(s)	302, 533, 739, 778, 972
Hsp92II	CATG	2 cut(s)	820, 889
HspAI	GCGC	2 cut(s)	323, 866
Ksp22I	TGATCA	2 cut(s)	379, 1051
Kzo9I	GATC	6 cut(s)	328, 339, 379, 579, 750, 1051
Lsp1109I	GCAGC	1 cut(s)	244
MaeI	CTAG	3 cut(s)	9, 429, 585
MaeIII	GTNAC	2 cut(s)	667, 1031
MalI	GATC	6 cut(s)	330, 341, 381, 581, 752, 1053
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	6 cut(s)	328, 339, 379, 579, 750, 1051
MboII	GAAGA	9 cut(s)	72, 155, 170, 349, 362, 745, 755, 1015, 1126
MfeI	CAATTG	1 cut(s)	1055
MflI	RGATCY	1 cut(s)	750
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	4 cut(s)	718, 960, 1027, 1055
MlyI	GAGTC	1 cut(s)	376
MnlI	CCTC	7 cut(s)	143, 514, 535, 561, 804, 931, 1117
MroXI	GAANNNNTTC	2 cut(s)	1019, 1131
MseI	TTAA	6 cut(s)	98, 257, 273, 597, 963, 1026
MslI	CAYNNNNRTG	1 cut(s)	916
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	3 cut(s)	140, 358, 649
MunI	CAATTG	1 cut(s)	1055
Mva1269I	GAATGC	1 cut(s)	1019
MvaI	CCWGG	2 cut(s)	140, 649
MwoI	GCNNNNNNNGC	2 cut(s)	241, 687
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	6 cut(s)	328, 339, 379, 579, 750, 1051
NlaIII	CATG	2 cut(s)	820, 889
NlaIV	GGNNCC	2 cut(s)	461, 552
NmeAIII	GCCGAG	1 cut(s)	563
NmuCI	GTSAC	1 cut(s)	1031
NsbI	TGCGCA	1 cut(s)	867
NspV	TTCGAA	1 cut(s)	638
PctI	GAATGC	1 cut(s)	1019
PdmI	GAANNNNTTC	2 cut(s)	1019, 1131
PfeI	GAWTC	2 cut(s)	859, 889
PfoI	TCCNGGA	1 cut(s)	647
PkrI	GCNGC	4 cut(s)	234, 246, 249, 399
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
PpuMI	RGGWCCY	1 cut(s)	968
PshBI	ATTAAT	1 cut(s)	1026
Psp5II	RGGWCCY	1 cut(s)	968
Psp6I	CCWGG	2 cut(s)	138, 647
PspGI	CCWGG	2 cut(s)	138, 647
PspN4I	GGNNCC	2 cut(s)	461, 552
PspPI	GGNCC	2 cut(s)	550, 968
PspPPI	RGGWCCY	1 cut(s)	968
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	750
PvuII	CAGCTG	1 cut(s)	235
RsaI	GTAC	3 cut(s)	287, 884, 1067
RsaNI	GTAC	3 cut(s)	286, 883, 1066
RseI	CAYNNNNRTG	1 cut(s)	916
SaqAI	TTAA	6 cut(s)	98, 257, 273, 597, 963, 1026
SatI	GCNGC	4 cut(s)	233, 245, 248, 398
Sau3AI	GATC	6 cut(s)	328, 339, 379, 579, 750, 1051
Sau96I	GGNCC	2 cut(s)	550, 968
ScaI	AGTACT	1 cut(s)	1067
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	3 cut(s)	140, 358, 649
SduI	GDGCHC	1 cut(s)	111
SfcI	CTRYAG	2 cut(s)	186, 852
SfuI	TTCGAA	1 cut(s)	638
SinI	GGWCC	2 cut(s)	550, 968
SmiMI	CAYNNNNRTG	1 cut(s)	916
Sse9I	AATT	4 cut(s)	718, 960, 1027, 1055
SsiI	CCGC	3 cut(s)	244, 247, 397
SspI	AATATT	1 cut(s)	420
SspMI	CTAG	3 cut(s)	9, 429, 585
StyD4I	CCNGG	3 cut(s)	138, 356, 647
TaaI	ACNGT	4 cut(s)	127, 350, 592, 856
TaqI	TCGA	6 cut(s)	122, 345, 566, 638, 936, 1121
TasI	AATT	4 cut(s)	718, 960, 1027, 1055
TatI	WGTACW	3 cut(s)	285, 882, 1065
TauI	GCSGC	3 cut(s)	247, 250, 400
TfiI	GAWTC	2 cut(s)	859, 889
Tru1I	TTAA	6 cut(s)	98, 257, 273, 597, 963, 1026
Tru9I	TTAA	6 cut(s)	98, 257, 273, 597, 963, 1026
TscAI	CASTG	3 cut(s)	325, 709, 861
TseFI	GTSAC	1 cut(s)	1031
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	1031
TspDTI	ATGAA	6 cut(s)	17, 428, 854, 902, 1012, 1140
TspRI	CASTG	3 cut(s)	325, 709, 861
VneI	GTGCAC	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	550, 968
VspI	ATTAAT	1 cut(s)	1026
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	718
XbaI	TCTAGA	1 cut(s)	8
XmnI	GAANNNNTTC	2 cut(s)	1019, 1131
XspI	CTAG	3 cut(s)	9, 429, 585
ZrmI	AGTACT	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.