Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005036

Physical Location & Seq

Genomic Coordinates Forward (+)

30779540 .. 30781346

Gene Structure 1807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1208300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAAATTCAGAGTTGGATCGTTACTGAAGCTCCGCATCTTCCTACCCACATCGCCAAATTTCCAATCTTTCCCCAAAACTTTGTTACCGGCAACGTGGTTTATTTTCACACCCGCCACCTATTCGACAATTTGCCTGACTGAGGAAGAAAGTGCGGGAGAAGACATTGGAGACCAACCAAAGAACTCTCTACAAGTTCTGAAGCAATTGGGCTGTAGTGACACTGAAATTTCGATGATCTCCACGCGGGGGCCTTCTCTACTGAATGCCAACGCGAACCAGCTTGAGTGCAAACTCAAGCTTCTAACTGGCTTGGGCATCACGGCGCCTGAGCTCGTGAAGATTATCATTGGCCGTCCCCGGTTGCTCACTTCTCGGGTTAACCATTGCTTGGATGAGCGGCTCGAGTTCTTTATGACATTGTTTGGATCCAGGGAAGTGCTTGTCAAAGCCATTGTGAGGAACCCTTCTCTCCTGACCTATGACTTTCAGAAGAAAATCAAGCCCGCCATTGCGCTGTACCAAGGAGTCGGTCTTAGTATGCAGGACTTGATCCAAATGGTTCTGTTGCGGCCTACGTTGATCCCAAGAACTTCATTTGATGAAGAAAAGATGGAATATATACGAAAAACCGGGCTTTCAAATGGTTCCAAGATGTATAAGCATGTTGTCACAATCATTGGCGTTTCACGACTTGAAACTATACGTAAGAAAGTTGCAAATTTGGAGAAGTTTGGTTTCTCAGAAGATGAGATTTTTTCCCTTTTCGCAAAGTTCCCCCTTGTGCTGACACTATCGGTCGATAAGGTTCAGAGGAACATGACTTTCATTTTAGGACAAATGAAGCTTCCTGCTACGACGGTTCTTGAGCACCCATGCTTGGTGTTCATGAATTTGGAGGATGTGTTGAAGCCACGAGTACTTCTTGCGCGGAAGGTGCGGGAGATGGGTCTTGATAAAAAGATTGAAGGTCCTATGATGATGAGGGCAATGAGAATGACGGAGAAGCGGTTTTTGAAGGCATTTGTTCGTTGTCACCCAAAGGATGTTGCTGATGAACTGATGGAGTACTACAAAAATGTGAAGGGTGTTAAGCGGTTGGCTGAAGCCTCAAGGACGTTACATCAAGGATTTCCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

381

Amino Acids

43.26

Weight (kDa)

9.65

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	64 - 139	3e-11	mTERF
mTERF	PF02536	126 - 339	1.8e-33	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79220
fragaria_vesca	FvH4_3g15040 FvH4_3g15050
malus_domestica	MD10G1208300.v1.1 MD10G1208400.v1.1
prunus_persica	Prupe.4G134600_v2.0.a1 Prupe.4G134700_v2.0.a1
pyrus_communis	pycom10g17720
rosa_chinensis	RchiOBHm_Chr5g0024801 RchiOBHm_Chr5g0024811
rosa_laevigata	RLG00000032815 RLG00000032816
rosa_multiflora	Rmu_sc0001757.1_g000014 Rmu_sc0001757.1_g000016 Rmu_sc0009744.1_g000008 Rmu_sc0016384.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054570 Rroxscaffold_1G00054580
rosa_rugosa	Rorug05G0084500 Rorug05G0084600
rosa_samantha	Rh5AG176300 Rh5AG176400 Rh5BG174000 Rh5BG174100 Rh5CG191000 Rh5CG191100 Rh5DG175600 Rh5DG175700
rosa_wichuraiana	Rw5G015980 Rw5G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AccB7I	CCANNNNNTGG	1 cut(s)	391
AccBSI	CCGCTC	1 cut(s)	400
AccII	CGCG	3 cut(s)	247, 275, 931
AclWI	GGATC	5 cut(s)	25, 423, 436, 547, 577
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	5 cut(s)	5, 58, 228, 721, 892
AcuI	CTGAAG	3 cut(s)	47, 221, 1125
AcyI	GRCGYC	1 cut(s)	326
AfaI	GTAC	3 cut(s)	521, 921, 1070
AfiI	CCNNNNNNNGG	5 cut(s)	142, 249, 391, 459, 880
AgsI	TTSAA	5 cut(s)	642, 698, 910, 968, 1018
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	5 cut(s)	31, 283, 301, 334, 847
AluI	AGCT	5 cut(s)	31, 283, 301, 334, 847
Alw21I	GWGCWC	2 cut(s)	336, 873
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	5 cut(s)	25, 423, 436, 547, 577
Ama87I	CYCGRG	2 cut(s)	375, 404
AoxI	GGCC	3 cut(s)	251, 352, 572
ApoI	RAATTY	5 cut(s)	5, 58, 228, 721, 892
AspLEI	GCGC	3 cut(s)	328, 517, 931
AspS9I	GGNCC	2 cut(s)	251, 971
AsuC2I	CCSGG	2 cut(s)	361, 634
AsuHPI	GGTGA	1 cut(s)	1028
AvaI	CYCGRG	2 cut(s)	375, 404
AvaII	GGWCC	1 cut(s)	971
BamHI	GGATCC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	336
BauI	CACGAG	2 cut(s)	335, 915
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	336, 873
BccI	CCATC	3 cut(s)	607, 940, 1057
BceAI	ACGGC	2 cut(s)	339, 339
BciT130I	CCWGG	1 cut(s)	433
BcnI	CCSGG	2 cut(s)	361, 634
BcoDI	GTCTC	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	214
BfoI	RGCGCY	1 cut(s)	329
BisI	GCNGC	2 cut(s)	401, 572
BlsI	GCNGC	2 cut(s)	402, 573
BmcAI	AGTACT	2 cut(s)	921, 1070
Bme1390I	CCNGG	3 cut(s)	361, 433, 634
Bme18I	GGWCC	1 cut(s)	971
BmeT110I	CYCGRG	2 cut(s)	375, 404
BmgT120I	GGNCC	2 cut(s)	251, 971
BmiI	GGNNCC	5 cut(s)	252, 327, 430, 464, 649
BmrFI	CCNGG	3 cut(s)	361, 433, 634
BmsI	GCATC	2 cut(s)	45, 327
BpiI	GAAGAC	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	4 cut(s)	281, 305, 887, 1096
BpuMI	CCSGG	2 cut(s)	361, 634
BsaAI	YACGTR	1 cut(s)	707
BsaHI	GRCGYC	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	359, 432, 523
BsaXI	ACNNNNNCTCC	6 cut(s)	15, 45, 890, 920, 995, 1025
Bsc4I	CCNNNNNNNGG	5 cut(s)	142, 249, 391, 459, 880
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	3 cut(s)	385, 510, 996
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	3 cut(s)	359, 432, 523
BseGI	GGATG	3 cut(s)	400, 907, 1051
BseLI	CCNNNNNNNGG	5 cut(s)	142, 249, 391, 459, 880
BseMI	GCAATG	3 cut(s)	385, 510, 996
BseMII	CTCAG	3 cut(s)	132, 321, 756
BseNI	ACTGG	1 cut(s)	313
Bsh1236I	CGCG	3 cut(s)	247, 275, 931
Bsh1285I	CGRYCG	1 cut(s)	801
BshFI	GGCC	3 cut(s)	253, 354, 574
BshNI	GGYRCC	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	801
BsiHKAI	GWGCWC	2 cut(s)	336, 873
BsiHKCI	CYCGRG	2 cut(s)	375, 404
BsiSI	CCGG	3 cut(s)	89, 361, 633
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	5 cut(s)	142, 249, 391, 459, 880
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	342
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	3 cut(s)	253, 354, 574
Bso31I	GGTCTC	1 cut(s)	165
BsoBI	CYCGRG	2 cut(s)	375, 404
Bsp1286I	GDGCHC	2 cut(s)	336, 873
Bsp143I	GATC	5 cut(s)	17, 237, 428, 552, 582
BspANI	GGCC	3 cut(s)	253, 354, 574
BspCNI	CTCAG	3 cut(s)	133, 322, 755
BspFNI	CGCG	3 cut(s)	247, 275, 931
BspHI	TCATGA	1 cut(s)	888
BspLI	GGNNCC	5 cut(s)	252, 327, 430, 464, 649
BspPI	GGATC	5 cut(s)	25, 423, 436, 547, 577
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	165
BsrBI	CCGCTC	1 cut(s)	400
BsrDI	GCAATG	3 cut(s)	385, 510, 996
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	359, 432, 523
BssMI	GATC	5 cut(s)	17, 237, 428, 552, 582
BssNI	GRCGYC	1 cut(s)	326
BssSI	CACGAG	2 cut(s)	335, 915
BssT1I	CCWWGG	1 cut(s)	523
Bst2BI	CACGAG	2 cut(s)	335, 915
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	1 cut(s)	862
BstACI	GRCGYC	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	4 cut(s)	141, 330, 536, 742
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	3 cut(s)	400, 907, 1051
BstFNI	CGCG	3 cut(s)	247, 275, 931
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	3 cut(s)	328, 517, 931
BstKTI	GATC	5 cut(s)	20, 240, 431, 555, 585
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	5 cut(s)	17, 237, 428, 552, 582
BstMCI	CGRYCG	1 cut(s)	801
BstMWI	GCNNNNNNNGC	1 cut(s)	937
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	3 cut(s)	359, 431, 632
BstSFI	CTRYAG	1 cut(s)	214
BstSNI	TACGTA	1 cut(s)	707
BstUI	CGCG	3 cut(s)	247, 275, 931
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	3 cut(s)	253, 354, 574
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	400, 907, 1051
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	888
CfoI	GCGC	3 cut(s)	328, 517, 931
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	251, 971
Csp6I	GTAC	3 cut(s)	520, 920, 1069
CviAII	CATG	4 cut(s)	665, 820, 876, 889
CviQI	GTAC	3 cut(s)	520, 920, 1069
DdeI	CTNAG	4 cut(s)	141, 330, 536, 742
DinI	GGCGCC	1 cut(s)	327
DpnI	GATC	5 cut(s)	19, 239, 430, 554, 584
DpnII	GATC	5 cut(s)	17, 237, 428, 552, 582
EaeI	YGGCCR	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	334
Eco105I	TACGTA	1 cut(s)	707
Eco130I	CCWWGG	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	971
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	3 cut(s)	47, 221, 1125
Eco88I	CYCGRG	2 cut(s)	375, 404
EcoICRI	GAGCTC	1 cut(s)	334
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoO109I	RGGNCCY	2 cut(s)	251, 971
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	336
EgeI	GGCGCC	1 cut(s)	327
EheI	GGCGCC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	4 cut(s)	668, 823, 879, 892
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	4 cut(s)	664, 819, 875, 888
FauI	CCCGC	5 cut(s)	121, 148, 240, 514, 933
Fnu4HI	GCNGC	2 cut(s)	401, 572
FokI	GGATG	3 cut(s)	407, 914, 1058
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	2 cut(s)	401, 572
GlaI	GCGC	3 cut(s)	327, 516, 930
GluI	GCNGC	2 cut(s)	401, 572
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	253, 354, 574
HapII	CCGG	3 cut(s)	89, 361, 633
HhaI	GCGC	3 cut(s)	328, 517, 931
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	4 cut(s)	668, 823, 879, 892
Hin6I	GCGC	3 cut(s)	326, 515, 929
HinP1I	GCGC	3 cut(s)	326, 515, 929
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	2 cut(s)	299, 845
HinfI	GANTC	1 cut(s)	528
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	3 cut(s)	89, 361, 633
HphI	GGTGA	1 cut(s)	1028
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	6 cut(s)	11, 201, 492, 745, 813, 1142
Hpy188III	TCNNGA	6 cut(s)	337, 475, 690, 866, 889, 953
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	1 cut(s)	862
HpyAV	CCTTC	6 cut(s)	264, 477, 928, 962, 1012, 1078
HpyCH4III	ACNGT	1 cut(s)	862
HpyCH4IV	ACGT	4 cut(s)	95, 578, 706, 1118
HpyCH4V	TGCA	3 cut(s)	291, 544, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	937
HpyF3I	CTNAG	4 cut(s)	141, 330, 536, 742
HpySE526I	ACGT	4 cut(s)	95, 578, 706, 1118
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	4 cut(s)	668, 823, 879, 892
HspAI	GCGC	3 cut(s)	326, 515, 929
KasI	GGCGCC	1 cut(s)	325
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	5 cut(s)	17, 237, 428, 552, 582
LmnI	GCTCC	1 cut(s)	36
LweI	GCATC	2 cut(s)	45, 327
MaeII	ACGT	4 cut(s)	95, 578, 706, 1118
MaeIII	GTNAC	6 cut(s)	21, 84, 218, 670, 1034, 1119
MalI	GATC	5 cut(s)	19, 239, 430, 554, 584
MbiI	CCGCTC	1 cut(s)	400
MboI	GATC	5 cut(s)	17, 237, 428, 552, 582
MboII	GAAGA	7 cut(s)	31, 158, 173, 352, 505, 617, 758
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	2 cut(s)	336, 873
MluCI	AATT	7 cut(s)	5, 58, 129, 206, 228, 721, 892
Mly113I	GGCGCC	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	537
MnlI	CCTC	6 cut(s)	136, 453, 807, 892, 978, 1120
MseI	TTAA	2 cut(s)	381, 1092
MspI	CCGG	3 cut(s)	89, 361, 633
MspR9I	CCNGG	3 cut(s)	361, 433, 634
MunI	CAATTG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	433
MvnI	CGCG	3 cut(s)	247, 275, 931
MwoI	GCNNNNNNNGC	1 cut(s)	937
NarI	GGCGCC	1 cut(s)	326
NciI	CCSGG	2 cut(s)	361, 634
NdeII	GATC	5 cut(s)	17, 237, 428, 552, 582
NlaIII	CATG	4 cut(s)	668, 823, 879, 892
NlaIV	GGNNCC	5 cut(s)	252, 327, 430, 464, 649
NmuCI	GTSAC	3 cut(s)	218, 670, 1034
NspI	RCATGY	1 cut(s)	668
PaeR7I	CTCGAG	1 cut(s)	404
PagI	TCATGA	1 cut(s)	888
PctI	GAATGC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	402, 573
PleI	GAGTC	1 cut(s)	536
PluTI	GGCGCC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	536
Ppu21I	YACGTR	1 cut(s)	707
PpuMI	RGGWCCY	1 cut(s)	971
Psp124BI	GAGCTC	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	971
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	5 cut(s)	252, 327, 430, 464, 649
PspPI	GGNCC	2 cut(s)	251, 971
PspPPI	RGGWCCY	1 cut(s)	971
PspXI	VCTCGAGB	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	428
RsaI	GTAC	3 cut(s)	521, 921, 1070
RsaNI	GTAC	3 cut(s)	520, 920, 1069
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	381, 1092
SatI	GCNGC	2 cut(s)	401, 572
Sau3AI	GATC	5 cut(s)	17, 237, 428, 552, 582
Sau96I	GGNCC	2 cut(s)	251, 971
ScaI	AGTACT	2 cut(s)	921, 1070
SchI	GAGTC	1 cut(s)	537
ScrFI	CCNGG	3 cut(s)	361, 433, 634
SduI	GDGCHC	2 cut(s)	336, 873
SfaNI	GCATC	2 cut(s)	45, 327
SfcI	CTRYAG	1 cut(s)	214
SfoI	GGCGCC	1 cut(s)	327
Sfr274I	CTCGAG	1 cut(s)	404
SinI	GGWCC	1 cut(s)	971
SlaI	CTCGAG	1 cut(s)	404
SmlI	CTYRAG	5 cut(s)	284, 296, 404, 866, 1111
SmoI	CTYRAG	5 cut(s)	284, 296, 404, 866, 1111
SnaBI	TACGTA	1 cut(s)	707
Sse9I	AATT	7 cut(s)	5, 58, 129, 206, 228, 721, 892
SspDI	GGCGCC	1 cut(s)	325
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	3 cut(s)	359, 431, 632
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	1 cut(s)	862
TaiI	ACGT	4 cut(s)	98, 581, 709, 1121
TaqI	TCGA	4 cut(s)	125, 233, 405, 801
TaqII	GACCGA	2 cut(s)	521, 787
TasI	AATT	7 cut(s)	5, 58, 129, 206, 228, 721, 892
TatI	WGTACW	2 cut(s)	919, 1068
TauI	GCSGC	2 cut(s)	403, 574
Tru1I	TTAA	2 cut(s)	381, 1092
Tru9I	TTAA	2 cut(s)	381, 1092
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	3 cut(s)	218, 670, 1034
Tsp45I	GTSAC	3 cut(s)	218, 670, 1034
TspDTI	ATGAA	8 cut(s)	17, 585, 618, 817, 857, 877, 905, 1071
TspGWI	ACGGA	1 cut(s)	1016
TspRI	CASTG	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	971
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	5 cut(s)	5, 58, 228, 721, 892
XceI	RCATGY	1 cut(s)	668
XhoI	CTCGAG	1 cut(s)	404
ZrmI	AGTACT	2 cut(s)	921, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.