Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005036

Physical Location & Seq

Genomic Coordinates Forward (+)

20925921 .. 20927078

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGCCATCTAGATTTGGTTCTTTAGTTAAGCAACTTAAGTTCCGAATTTTATTGCCACCCTCTCAAAATTTCGTCACTTTTCCGAAACTTCTGTACCCAACAAGTGGTTTACTTTTCCCACTCACCACCTATTCGACGGTTTGCCAAGCCCAGGAAGAAGGTGTTGAAGTAGATATTAGAGACCAACCCAAGAATTCTGCAGAAGTTCTGAGGAACTGGGGTTGTAGTGATACAGACATATCCAAGATGTTCACGCGGCGGCCTGTTTTGCGGAGTACTGACCTTAACCAGCTTCAGTCCAAACTAAACGTTCTAAGTGGCTTGGGCATTACTGCACCTCAGCTCGTGAAGATCATAAATTGTTACCCCCGGTTTCTTAGTTATCGATTTAATCATTGCATTGATGAGCGGCTTGAGTTCTTTATGAGATTGTTTGTGTCAAGGGAAGTGCTTGTCAAAGCCATTGTAAGGAACCCGTCTCTCTTGATCTATGACCTTCACAATAAAATCAAGCCTGTCATTAAGCTGTATGAAGGAATTGGTCTTAGCATGGAGGACTTGATTCAAATGCTTCTACAACGCGCTACATTGATTCCAAGAACTTCATTTAATGATGAAAAGATGGAATATATTCGAAAAACCAGGCTCTCAACTGATTCCAGGATGTACAAGTATGTTGTCACAATTATTGGTGTTTCACGCCTTGAAACACTCAGTCAGAAGATATCTAACTTTGAGAAGTTTGGTTTCTCGGAAGATGAAATCTTTGGTCTTTTGGGAAGCTCTCCCCTTGTGTTTACACTGTCAGTTGACAAGGTTCAGAGGAACATGACTTTCATTATAGGAAAAATGAAGTTCCCCGCTAAAGTGATTCTTGAGAATCCATTTTTGCTGTACTCAAATCTGGAAGCTGTGTTGAAGCCACGGGTATTTCTTGTAGGGAAGATTCAGGAAATGGGTCTTGACTTGCAGATTAAAGGCCCTAGGATGCTGACGGCATTGAGGATGACAGAGAAGAGGTTTCTGAAGGCATTTATTAATTGCCACCCAAAGGATGTTGCTGATGAATTAATGGAATTCTATACAAATGCAAAGAGTGTGAAGCGATTGGCAGAAGACTATTCCAAGAAGAACTTCCATCAAGGATTTCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

386

Amino Acids

44.49

Weight (kDa)

9.6

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	68 - 141	1.7e-11	mTERF
mTERF	PF02536	131 - 342	2.9e-32	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79220
fragaria_vesca	FvH4_3g15040 FvH4_3g15050
malus_domestica	MD10G1208300.v1.1 MD10G1208400.v1.1
prunus_persica	Prupe.4G134600_v2.0.a1 Prupe.4G134700_v2.0.a1
pyrus_communis	pycom10g17720
rosa_chinensis	RchiOBHm_Chr5g0024801 RchiOBHm_Chr5g0024811
rosa_laevigata	RLG00000032815 RLG00000032816
rosa_multiflora	Rmu_sc0001757.1_g000014 Rmu_sc0001757.1_g000016 Rmu_sc0009744.1_g000008 Rmu_sc0016384.1_g000001
rosa_roxburghii	Rroxscaffold_1G00054570 Rroxscaffold_1G00054580
rosa_rugosa	Rorug05G0084500 Rorug05G0084600
rosa_samantha	Rh5AG176300 Rh5AG176400 Rh5BG174000 Rh5BG174100 Rh5CG191000 Rh5CG191100 Rh5DG175600 Rh5DG175700
rosa_wichuraiana	Rw5G015980 Rw5G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	104
AccBSI	CCGCTC	1 cut(s)	409
AccII	CGCG	2 cut(s)	256, 582
AciI	CCGC	5 cut(s)	256, 259, 271, 409, 861
AclI	AACGTT	1 cut(s)	309
AcsI	RAATTY	4 cut(s)	45, 67, 193, 1076
AcuI	CTGAAG	2 cut(s)	278, 1046
AfaI	GTAC	4 cut(s)	95, 277, 668, 896
AfiI	CCNNNNNNNGG	4 cut(s)	104, 151, 468, 1051
AflII	CTTAAG	1 cut(s)	35
AgsI	TTSAA	4 cut(s)	167, 566, 707, 919
AjnI	CCWGG	3 cut(s)	150, 641, 659
AjuI	GAANNNNNNNTTGG	2 cut(s)	1118, 1150
AluBI	AGCT	5 cut(s)	292, 343, 526, 783, 911
AluI	AGCT	5 cut(s)	292, 343, 526, 783, 911
Alw26I	GTCTC	2 cut(s)	174, 483
AoxI	GGCC	2 cut(s)	260, 979
ApoI	RAATTY	4 cut(s)	45, 67, 193, 1076
AseI	ATTAAT	2 cut(s)	1038, 1070
Asp700I	GAANNNNTTC	2 cut(s)	630, 1133
AspA2I	CCTAGG	1 cut(s)	983
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	1 cut(s)	980
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	634
AvrII	CCTAGG	1 cut(s)	983
BaeI	ACNNNNGTAYC	2 cut(s)	77, 110
BauI	CACGAG	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	1122
BbvCI	CCTCAGC	1 cut(s)	339
BccI	CCATC	3 cut(s)	13, 616, 1146
BceAI	ACGGC	1 cut(s)	1011
BciT130I	CCWGG	3 cut(s)	152, 643, 661
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	174, 483
BfaI	CTAG	2 cut(s)	9, 984
BfmI	CTRYAG	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	35
BisI	GCNGC	3 cut(s)	257, 260, 410
BlnI	CCTAGG	1 cut(s)	983
BlsI	GCNGC	3 cut(s)	258, 261, 411
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	4 cut(s)	152, 370, 643, 661
BmgT120I	GGNCC	1 cut(s)	980
BmiI	GGNNCC	1 cut(s)	473
BmrFI	CCNGG	4 cut(s)	152, 370, 643, 661
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	978
BmuI	ACTGGG	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	1122
Bpu10I	CCTNAGC	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	634
BpuEI	CTTGAG	2 cut(s)	434, 896
BpuMI	CCSGG	1 cut(s)	370
Bsa29I	ATCGAT	1 cut(s)	385
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	4 cut(s)	150, 368, 923, 983
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 151, 468, 1051
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	394
BseBI	CCWGG	3 cut(s)	152, 643, 661
BseCI	ATCGAT	1 cut(s)	385
BseDI	CCNNGG	4 cut(s)	150, 368, 923, 983
BseGI	GGATG	4 cut(s)	669, 993, 1011, 1060
BseLI	CCNNNNNNNGG	4 cut(s)	104, 151, 468, 1051
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	3 cut(s)	200, 353, 727
BseNI	ACTGG	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	318
Bsh1236I	CGCG	2 cut(s)	256, 582
BshFI	GGCC	2 cut(s)	262, 981
BshVI	ATCGAT	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	4 cut(s)	104, 151, 468, 1051
BsmAI	GTCTC	2 cut(s)	174, 483
BsmBI	CGTCTC	1 cut(s)	483
BsnI	GGCC	2 cut(s)	262, 981
Bso31I	GGTCTC	1 cut(s)	174
Bsp119I	TTCGAA	1 cut(s)	634
Bsp1407I	TGTACA	1 cut(s)	666
Bsp143I	GATC	2 cut(s)	351, 486
BspACI	CCGC	5 cut(s)	256, 259, 271, 409, 861
BspANI	GGCC	2 cut(s)	262, 981
BspCNI	CTCAG	3 cut(s)	201, 352, 726
BspDI	ATCGAT	1 cut(s)	385
BspFNI	CGCG	2 cut(s)	256, 582
BspLI	GGNNCC	1 cut(s)	473
BspMAI	CTGCAG	1 cut(s)	202
BspT104I	TTCGAA	1 cut(s)	634
BspTI	CTTAAG	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	394
BsrGI	TGTACA	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	4 cut(s)	150, 368, 923, 983
BssMI	GATC	2 cut(s)	351, 486
BssSI	CACGAG	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	983
Bst2BI	CACGAG	1 cut(s)	344
Bst2UI	CCWGG	3 cut(s)	152, 643, 661
Bst4CI	ACNGT	2 cut(s)	139, 804
Bst6I	CTCTTC	1 cut(s)	1010
BstAFI	CTTAAG	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	666
BstBI	TTCGAA	1 cut(s)	634
BstDEI	CTNAG	6 cut(s)	209, 314, 339, 377, 545, 713
BstDSI	CCRYGG	1 cut(s)	923
BstF5I	GGATG	4 cut(s)	669, 993, 1011, 1060
BstFNI	CGCG	2 cut(s)	256, 582
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	2 cut(s)	354, 489
BstMAI	GTCTC	2 cut(s)	174, 483
BstMBI	GATC	2 cut(s)	351, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNI	CCWGG	3 cut(s)	152, 643, 661
BstSCI	CCNGG	4 cut(s)	150, 368, 641, 659
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	2 cut(s)	256, 582
BstV2I	GAAGAC	1 cut(s)	1122
Bsu15I	ATCGAT	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	262, 981
BsuTUI	ATCGAT	1 cut(s)	385
BtgI	CCRYGG	1 cut(s)	923
BtsCI	GGATG	4 cut(s)	669, 993, 1011, 1060
BtsIMutI	CAGTG	1 cut(s)	800
CfoI	GCGC	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	980
ClaI	ATCGAT	1 cut(s)	385
Csp6I	GTAC	4 cut(s)	94, 276, 667, 895
CviAII	CATG	2 cut(s)	550, 829
CviQI	GTAC	4 cut(s)	94, 276, 667, 895
DdeI	CTNAG	6 cut(s)	209, 314, 339, 377, 545, 713
DpnI	GATC	2 cut(s)	353, 488
DpnII	GATC	2 cut(s)	351, 486
Eam1104I	CTCTTC	1 cut(s)	1010
EarI	CTCTTC	1 cut(s)	1010
Eco130I	CCWWGG	1 cut(s)	983
Eco31I	GGTCTC	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	726
Eco57I	CTGAAG	2 cut(s)	278, 1046
EcoO109I	RGGNCCY	1 cut(s)	980
EcoRI	GAATTC	2 cut(s)	193, 1076
EcoRII	CCWGG	3 cut(s)	150, 641, 659
EcoRV	GATATC	1 cut(s)	726
EcoT14I	CCWWGG	1 cut(s)	983
ErhI	CCWWGG	1 cut(s)	983
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	2 cut(s)	553, 832
FalI	AAGNNNNNCTT	4 cut(s)	858, 890, 1118, 1150
FatI	CATG	2 cut(s)	549, 828
FauI	CCCGC	1 cut(s)	868
Fnu4HI	GCNGC	3 cut(s)	257, 260, 410
FokI	GGATG	4 cut(s)	676, 1000, 1018, 1067
Fsp4HI	GCNGC	3 cut(s)	257, 260, 410
FspBI	CTAG	2 cut(s)	9, 984
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	3 cut(s)	257, 260, 410
HaeIII	GGCC	2 cut(s)	262, 981
HapII	CCGG	1 cut(s)	370
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	2 cut(s)	553, 832
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HinfI	GANTC	6 cut(s)	562, 592, 656, 871, 880, 946
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	4 cut(s)	110, 252, 798, 811
Hpy188I	TCNGA	7 cut(s)	44, 84, 210, 720, 754, 822, 1026
Hpy188III	TCNNGA	7 cut(s)	9, 346, 484, 875, 905, 950, 962
Hpy8I	GTNNAC	4 cut(s)	110, 252, 798, 811
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	4 cut(s)	152, 506, 527, 1021
HpyCH4III	ACNGT	2 cut(s)	139, 804
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	5 cut(s)	200, 335, 399, 970, 1091
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	6 cut(s)	209, 314, 339, 377, 545, 713
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	553, 832
HspAI	GCGC	1 cut(s)	582
Kzo9I	GATC	2 cut(s)	351, 486
LweI	GCATC	1 cut(s)	978
MaeI	CTAG	2 cut(s)	9, 984
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	3 cut(s)	73, 362, 679
MalI	GATC	2 cut(s)	353, 488
MbiI	CCGCTC	1 cut(s)	409
MboI	GATC	2 cut(s)	351, 486
MboII	GAAGA	8 cut(s)	167, 361, 733, 767, 955, 1027, 1127, 1141
MluCI	AATT	9 cut(s)	45, 67, 193, 358, 537, 684, 1039, 1067, 1076
MnlI	CCTC	7 cut(s)	70, 204, 348, 547, 816, 996, 1011
MroXI	GAANNNNTTC	2 cut(s)	630, 1133
MseI	TTAA	9 cut(s)	27, 36, 285, 390, 522, 609, 975, 1038, 1070
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	4 cut(s)	152, 370, 643, 661
MvaI	CCWGG	3 cut(s)	152, 643, 661
MvnI	CGCG	2 cut(s)	256, 582
MwoI	GCNNNNNNNGC	1 cut(s)	268
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	2 cut(s)	351, 486
NlaIII	CATG	2 cut(s)	553, 832
NlaIV	GGNNCC	1 cut(s)	473
NmuCI	GTSAC	2 cut(s)	73, 679
NspV	TTCGAA	1 cut(s)	634
PdmI	GAANNNNTTC	2 cut(s)	630, 1133
PfeI	GAWTC	6 cut(s)	562, 592, 656, 871, 880, 946
PflMI	CCANNNNNTGG	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	659
PkrI	GCNGC	3 cut(s)	258, 261, 411
PshBI	ATTAAT	2 cut(s)	1038, 1070
Psp1406I	AACGTT	1 cut(s)	309
Psp6I	CCWGG	3 cut(s)	150, 641, 659
PspGI	CCWGG	3 cut(s)	150, 641, 659
PspN4I	GGNNCC	1 cut(s)	473
PspPI	GGNCC	1 cut(s)	980
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	4 cut(s)	95, 277, 668, 896
RsaNI	GTAC	4 cut(s)	94, 276, 667, 895
SaqAI	TTAA	9 cut(s)	27, 36, 285, 390, 522, 609, 975, 1038, 1070
SatI	GCNGC	3 cut(s)	257, 260, 410
Sau3AI	GATC	2 cut(s)	351, 486
Sau96I	GGNCC	1 cut(s)	980
ScaI	AGTACT	1 cut(s)	277
ScrFI	CCNGG	4 cut(s)	152, 370, 643, 661
SfaNI	GCATC	1 cut(s)	978
SfcI	CTRYAG	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	634
SmlI	CTYRAG	3 cut(s)	35, 413, 875
SmoI	CTYRAG	3 cut(s)	35, 413, 875
Sse9I	AATT	9 cut(s)	45, 67, 193, 358, 537, 684, 1039, 1067, 1076
SsiI	CCGC	5 cut(s)	256, 259, 271, 409, 861
SspMI	CTAG	2 cut(s)	9, 984
StyD4I	CCNGG	4 cut(s)	150, 368, 641, 659
StyI	CCWWGG	1 cut(s)	983
TaaI	ACNGT	2 cut(s)	139, 804
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	134, 385, 634
TasI	AATT	9 cut(s)	45, 67, 193, 358, 537, 684, 1039, 1067, 1076
TatI	WGTACW	3 cut(s)	275, 666, 894
TauI	GCSGC	3 cut(s)	259, 262, 412
TfiI	GAWTC	6 cut(s)	562, 592, 656, 871, 880, 946
Tru1I	TTAA	9 cut(s)	27, 36, 285, 390, 522, 609, 975, 1038, 1070
Tru9I	TTAA	9 cut(s)	27, 36, 285, 390, 522, 609, 975, 1038, 1070
TscAI	CASTG	1 cut(s)	807
TseFI	GTSAC	2 cut(s)	73, 679
Tsp45I	GTSAC	2 cut(s)	73, 679
TspDTI	ATGAA	7 cut(s)	546, 594, 630, 774, 826, 866, 1080
TspRI	CASTG	1 cut(s)	807
Van91I	CCANNNNNTGG	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	35
VspI	ATTAAT	2 cut(s)	1038, 1070
XapI	RAATTY	4 cut(s)	45, 67, 193, 1076
XbaI	TCTAGA	1 cut(s)	8
XmaJI	CCTAGG	1 cut(s)	983
XmnI	GAANNNNTTC	2 cut(s)	630, 1133
XspI	CTAG	2 cut(s)	9, 984
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.