AT1G80133

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006184
Physical Location & Seq
Reverse (-)
30143628 .. 30144313
686 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80133.1

Sequence Viewer

Length: 300 bp
ATGGATTCGTCAAGAAAATATAAACGATGTGGTTTTGGAGCTGCACTGTTCGTTGCTAACATCTTCTTCTCTCTGCTCTCTCTACACTGCATATCTGGGGCACATGGTCATCAACAAAGAATGAAAGAATCGGTTATGGGTTCAGAGCCTCCCGTGTGTGCGACAAAATGCCGGAACTGCAAGCCTTGCCTTCCTTATCTATTTGACATTCGTGGTGCTCATGATGATGATGATGATAGTGAACCATACTATCCGGTAAAGTGGATATGTAGATGTAGAGATAGAGTATTTGAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

99

Amino Acids

11.32

Weight (kDa)

8.14

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 46 - 99 3.7e-17 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw21I GWGCWC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 28
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 253
BseSI GKGCMC 1 cut(s) 103
BseXI GCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 2 cut(s) 172, 254
Bsp1286I GDGCHC 2 cut(s) 103, 220
BspHI TCATGA 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 182
BstMWI GCNNNNNNNGC 2 cut(s) 177, 186
BstSLI GKGCMC 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 2 cut(s) 44, 85
Cac8I GCNNGC 1 cut(s) 182
CciI TCATGA 1 cut(s) 220
CviAII CATG 2 cut(s) 104, 221
CviJI RGCY 3 cut(s) 41, 148, 184
CviKI_1 RGCY 3 cut(s) 41, 148, 184
FaeI CATG 2 cut(s) 107, 224
FaiI YATR 7 cut(s) 21, 92, 105, 137, 222, 247, 268
FatI CATG 2 cut(s) 103, 220
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
HapII CCGG 2 cut(s) 172, 254
Hin1II CATG 2 cut(s) 107, 224
HinfI GANTC 2 cut(s) 5, 128
HpaII CCGG 2 cut(s) 172, 254
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 12, 221
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4V TGCA 3 cut(s) 44, 90, 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 186
Hsp92II CATG 2 cut(s) 107, 224
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 3 cut(s) 81, 185, 267
Lsp1109I GCAGC 1 cut(s) 28
MboII GAAGA 2 cut(s) 55, 58
MhlI GDGCHC 2 cut(s) 103, 220
MnlI CCTC 1 cut(s) 159
MseI TTAA 1 cut(s) 298
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 2 cut(s) 172, 254
MwoI GCNNNNNNNGC 2 cut(s) 177, 186
NlaIII CATG 2 cut(s) 107, 224
PagI TCATGA 1 cut(s) 220
PfeI GAWTC 2 cut(s) 5, 128
PkrI GCNGC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 298
SatI GCNGC 1 cut(s) 42
SduI GDGCHC 2 cut(s) 103, 220
SetI ASST 2 cut(s) 43, 298
SmiMI CAYNNNNRTG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 48
TfiI GAWTC 2 cut(s) 5, 128
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TscAI CASTG 2 cut(s) 51, 92
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 2 cut(s) 51, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.