FvH4_1g03100

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006184
Physical Location & Seq
Reverse (-)
1750931 .. 1751367
437 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03100.t1

Sequence Viewer

Length: 321 bp
ATGATGGCTGCTGTTCTGATGATGCTCATCTTCTCTCTCACATTCCTTTCTTCCAATTCAGGTGAGCCAATGTTGCCAAGAGATGAGCATGGTGATCATGAGCAGCAGTTGAAGAATGAAATGAAGATGGCATTAGGTTCGAGGCCGCCGCGGTGTGTTAACAAGTGCATGAGTTGCAGGCCTTGTACAGCCACACTTGTGGTTCCTCCACACCACAAGAGGAACAATCTCAAGGCCACACCATTTCACTATGAGGGAGATGAGACCTATTATCTTCTCTCATGGAAATGCAGATGCAGGAATAAGCTGTTCCAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

107

Amino Acids

12.26

Weight (kDa)

9.02

Isoelectric Point (pI)

61.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 45 - 106 1.8e-20 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 151
AciI CCGC 3 cut(s) 146, 149, 151
AfaI GTAC 1 cut(s) 187
AgsI TTSAA 1 cut(s) 112
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw26I GTCTC 1 cut(s) 257
AoxI GGCC 3 cut(s) 143, 179, 234
ApeKI GCWGC 2 cut(s) 8, 103
AsuHPI GGTGA 2 cut(s) 74, 104
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 120, 154
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 257
BisI GCNGC 4 cut(s) 9, 104, 146, 149
BlsI GCNGC 4 cut(s) 10, 105, 147, 150
BmiI GGNNCC 1 cut(s) 204
BmsI GCATC 2 cut(s) 12, 284
BpuEI CTTGAG 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 149
Bse8I GATNNNNATC 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 149
BseJI GATNNNNATC 1 cut(s) 26
BseXI GCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 151
BshFI GGCC 3 cut(s) 145, 181, 236
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 3 cut(s) 145, 181, 236
Bso31I GGTCTC 1 cut(s) 257
Bsp1407I TGTACA 1 cut(s) 185
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 3 cut(s) 146, 149, 151
BspANI GGCC 3 cut(s) 145, 181, 236
BspFNI CGCG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 204
BspTNI GGTCTC 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 1 cut(s) 94
BstAPI GCANNNNNTGC 1 cut(s) 174
BstAUI TGTACA 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 151
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 73, 174
BstUI CGCG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 115
BstXI CCANNNNNNTGG 1 cut(s) 199
BsuRI GGCC 3 cut(s) 145, 181, 236
BtgI CCRYGG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 179
CciI TCATGA 1 cut(s) 97
Cfr42I CCGCGG 1 cut(s) 152
Csp6I GTAC 1 cut(s) 186
CviAII CATG 5 cut(s) 89, 98, 169, 282, 318
CviJI RGCY 7 cut(s) 8, 67, 145, 181, 191, 236, 307
CviKI_1 RGCY 7 cut(s) 8, 67, 145, 181, 191, 236, 307
CviQI GTAC 1 cut(s) 186
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco147I AGGCCT 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 257
FaeI CATG 5 cut(s) 92, 101, 172, 285, 321
FaiI YATR 6 cut(s) 90, 99, 170, 252, 283, 319
FatI CATG 5 cut(s) 88, 97, 168, 281, 317
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 4 cut(s) 9, 104, 146, 149
Fsp4HI GCNGC 4 cut(s) 9, 104, 146, 149
GluI GCNGC 4 cut(s) 9, 104, 146, 149
HaeIII GGCC 3 cut(s) 145, 181, 236
Hin1II CATG 5 cut(s) 92, 101, 172, 285, 321
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HpaI GTTAAC 1 cut(s) 160
HphI GGTGA 2 cut(s) 74, 104
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 160
HpyCH4V TGCA 4 cut(s) 168, 177, 291, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 174
Hsp92II CATG 5 cut(s) 92, 101, 172, 285, 321
Ksp22I TGATCA 1 cut(s) 94
KspAI GTTAAC 1 cut(s) 160
KspI CCGCGG 1 cut(s) 152
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 45, 163, 283
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 2 cut(s) 12, 284
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 5 cut(s) 22, 42, 124, 136, 266
MluCI AATT 1 cut(s) 55
MnlI CCTC 4 cut(s) 135, 213, 216, 247
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 2 cut(s) 197, 286
MspA1I CMGCKG 1 cut(s) 151
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 73, 174
NdeII GATC 1 cut(s) 94
NlaIII CATG 5 cut(s) 92, 101, 172, 285, 321
NlaIV GGNNCC 1 cut(s) 204
OliI CACNNNNGTG 1 cut(s) 197
PagI TCATGA 1 cut(s) 97
PceI AGGCCT 1 cut(s) 181
PkrI GCNGC 4 cut(s) 10, 105, 147, 150
PspN4I GGNNCC 1 cut(s) 204
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 2 cut(s) 197, 286
SacII CCGCGG 1 cut(s) 152
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 4 cut(s) 9, 104, 146, 149
Sau3AI GATC 1 cut(s) 94
SetI ASST 4 cut(s) 64, 139, 269, 309
SfaNI GCATC 2 cut(s) 12, 284
Sfr303I CCGCGG 1 cut(s) 152
SgrBI CCGCGG 1 cut(s) 152
SmiMI CAYNNNNRTG 2 cut(s) 197, 286
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 55
SseBI AGGCCT 1 cut(s) 181
SsiI CCGC 3 cut(s) 146, 149, 151
StuI AGGCCT 1 cut(s) 181
TaqI TCGA 1 cut(s) 140
TasI AATT 1 cut(s) 55
TatI WGTACW 1 cut(s) 185
TauI GCSGC 2 cut(s) 148, 151
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 2 cut(s) 8, 103
TspDTI ATGAA 2 cut(s) 132, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.