Prupe.3G085300_v2.0.a1

EPIDERMAL PATTERNING FACTOR-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0006184
Physical Location & Seq
Forward (+)
6291055 .. 6292497
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G085300.1

Sequence Viewer

Length: 351 bp
ATGGCTCCTGCAAGCAGAAGCTACCATGTACATGGCCGCAAAGTTGCAATAATCACTGTGGCTTCCATCTTTTTGCTCACAATTCTGCTTCCCAACTCAGTGGATTCTCTGCATTCAAGCAACAACAGTGAGAGTGATGATGATGAATTCAGGCAAAGCAAAATGGTTTTGGGTTCAAGGCCTCCTGGATGTCAAAACAAGTGCTTGAATTGCAGGCCTTGCATTGCTACTCTGGTCATCCCAGTTCACAAAACAAAGCGCTTCAGCTTGTCATCTCATGGAGAAGAAGATGACAGTTATTATTTGCTTTCATGGAAATGCAGATGTGGAAATAAGCTATTTCAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

117

Amino Acids

12.96

Weight (kDa)

8.82

Isoelectric Point (pI)

60.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 37
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 247
AfaI GTAC 1 cut(s) 30
AfeI AGCGCT 1 cut(s) 260
AgsI TTSAA 4 cut(s) 117, 177, 208, 344
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 3 cut(s) 21, 267, 337
AluI AGCT 3 cut(s) 21, 267, 337
Aor51HI AGCGCT 1 cut(s) 260
AoxI GGCC 3 cut(s) 34, 179, 215
ApoI RAATTY 1 cut(s) 146
AspLEI GCGC 1 cut(s) 261
BccI CCATC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 262
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 236
BmuI ACTGGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 194, 237
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 242
BshFI GGCC 3 cut(s) 36, 181, 217
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 3 cut(s) 36, 181, 217
Bsp1407I TGTACA 1 cut(s) 28
BspACI CCGC 1 cut(s) 37
BspANI GGCC 3 cut(s) 36, 181, 217
BspCNI CTCAG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 222
BsrGI TGTACA 1 cut(s) 28
BsrI ACTGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 3 cut(s) 58, 128, 296
BstAPI GCANNNNNTGC 1 cut(s) 219
BstAUI TGTACA 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 13, 215
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 2 cut(s) 194, 237
BstH2I RGCGCY 1 cut(s) 262
BstHHI GCGC 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 210, 219
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BstXI CCANNNNNNTGG 2 cut(s) 32, 100
BsuRI GGCC 3 cut(s) 36, 181, 217
BtsCI GGATG 2 cut(s) 194, 237
BtsIMutI CAGTG 3 cut(s) 54, 105, 133
Cac8I GCNNGC 2 cut(s) 13, 215
CfoI GCGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 29
CviAII CATG 4 cut(s) 26, 32, 278, 312
CviJI RGCY 8 cut(s) 5, 21, 36, 62, 181, 217, 267, 337
CviKI_1 RGCY 8 cut(s) 5, 21, 36, 62, 181, 217, 267, 337
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 34
Eco147I AGGCCT 2 cut(s) 181, 217
Eco47III AGCGCT 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 184
FaeI CATG 4 cut(s) 29, 35, 281, 315
FaiI YATR 4 cut(s) 27, 33, 279, 313
FatI CATG 4 cut(s) 25, 31, 277, 311
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 2 cut(s) 201, 224
Fsp4HI GCNGC 1 cut(s) 37
GlaI GCGC 1 cut(s) 260
GluI GCNGC 1 cut(s) 37
HaeII RGCGCY 1 cut(s) 262
HaeIII GGCC 3 cut(s) 36, 181, 217
HhaI GCGC 1 cut(s) 261
Hin1II CATG 4 cut(s) 29, 35, 281, 315
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HinfI GANTC 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 247
Hpy8I GTNNAC 1 cut(s) 247
HpyCH4III ACNGT 3 cut(s) 58, 128, 296
HpyCH4V TGCA 6 cut(s) 11, 47, 112, 213, 222, 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 219
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 4 cut(s) 29, 35, 281, 315
HspAI GCGC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 7 cut(s) 21, 136, 171, 198, 199, 218, 255
MboII GAAGA 2 cut(s) 296, 299
MluCI AATT 3 cut(s) 81, 146, 208
MnlI CCTC 1 cut(s) 192
MslI CAYNNNNRTG 2 cut(s) 30, 316
MspR9I CCNGG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 210, 219
NlaIII CATG 4 cut(s) 29, 35, 281, 315
NlaIV GGNNCC 1 cut(s) 6
PceI AGGCCT 2 cut(s) 181, 217
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 184
PkrI GCNGC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 6
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 2 cut(s) 30, 316
SatI GCNGC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 186
SetI ASST 4 cut(s) 23, 269, 339, 349
SmiMI CAYNNNNRTG 2 cut(s) 30, 316
Sse9I AATT 3 cut(s) 81, 146, 208
SseBI AGGCCT 2 cut(s) 181, 217
SsiI CCGC 1 cut(s) 37
StuI AGGCCT 2 cut(s) 181, 217
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 3 cut(s) 58, 128, 296
TasI AATT 3 cut(s) 81, 146, 208
TatI WGTACW 1 cut(s) 28
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 1 cut(s) 104
TscAI CASTG 3 cut(s) 61, 105, 133
TspDTI ATGAA 2 cut(s) 159, 300
TspRI CASTG 3 cut(s) 61, 105, 133
XapI RAATTY 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.