Rmu_sc0004235.1_g000048

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004235.1
OG0006184
Physical Location & Seq
Forward (+)
125982 .. 126418
437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004235.1_g000048.1.cds

Sequence Viewer

Length: 336 bp
atgatggctgcttcttctagaatcattctgatgatgctcatcttctgtctcacattcctttcttccaattcaggtgagccattgttgccaagagatcagcacggtgatcatgagcagcagttgaaaaagcaaatgaagatggcgttgggttcgagcccgccacggtgtgttaacaggtgcatgagttgcagaccttgtacggccacgcttgtggttcctccacaccaccacaagataaacaatctcaaggccacaccggatcattacgatggagatgagacctattatcttctctcatggaaatgtagatgcaggaataagttgttccaaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

111

Amino Acids

12.73

Weight (kDa)

9.1

Isoelectric Point (pI)

65.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 201
AdeI CACNNNGTG 1 cut(s) 167
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 1 cut(s) 124
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AleI CACNNNNGTG 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 53, 272
AlwI GGATC 1 cut(s) 267
AoxI GGCC 2 cut(s) 201, 249
ApeKI GCWGC 2 cut(s) 8, 115
AsuHPI GGTGA 2 cut(s) 86, 116
BanII GRGCYC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 133, 263
BceAI ACGGC 1 cut(s) 216
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 53, 272
BfaI CTAG 1 cut(s) 18
BisI GCNGC 2 cut(s) 9, 116
BlsI GCNGC 2 cut(s) 10, 117
BmiI GGNNCC 1 cut(s) 216
BmsI GCATC 2 cut(s) 24, 299
BpuEI CTTGAG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 161
BseJI GATNNNNATC 1 cut(s) 38
BseXI GCAGC 1 cut(s) 127
BshFI GGCC 2 cut(s) 203, 251
BsiSI CCGG 1 cut(s) 257
BsmAI GTCTC 2 cut(s) 53, 272
BsnI GGCC 2 cut(s) 203, 251
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 3 cut(s) 94, 106, 259
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 203, 251
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 3 cut(s) 94, 106, 259
Bst4CI ACNGT 2 cut(s) 104, 165
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 161
BstKTI GATC 3 cut(s) 97, 109, 262
BstMAI GTCTC 2 cut(s) 53, 272
BstMBI GATC 3 cut(s) 94, 106, 259
BstMWI GCNNNNNNNGC 2 cut(s) 85, 186
BstV1I GCAGC 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 211
BsuRI GGCC 2 cut(s) 203, 251
BtgI CCRYGG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 158
CciI TCATGA 1 cut(s) 109
Csp6I GTAC 1 cut(s) 198
CviAII CATG 3 cut(s) 110, 181, 297
CviJI RGCY 5 cut(s) 8, 79, 156, 203, 251
CviKI_1 RGCY 5 cut(s) 8, 79, 156, 203, 251
CviQI GTAC 1 cut(s) 198
DpnI GATC 3 cut(s) 96, 108, 261
DpnII GATC 3 cut(s) 94, 106, 259
DraIII CACNNNGTG 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 158
FaeI CATG 3 cut(s) 113, 184, 300
FaiI YATR 3 cut(s) 111, 182, 298
FatI CATG 3 cut(s) 109, 180, 296
FauI CCCGC 1 cut(s) 165
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 9, 116
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 9, 116
FspBI CTAG 1 cut(s) 18
GluI GCNGC 2 cut(s) 9, 116
HaeIII GGCC 2 cut(s) 203, 251
HapII CCGG 1 cut(s) 257
Hin1II CATG 3 cut(s) 113, 184, 300
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 21
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 1 cut(s) 257
HphI GGTGA 2 cut(s) 86, 116
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 18, 110
Hpy8I GTNNAC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 104, 165
HpyCH4V TGCA 3 cut(s) 180, 189, 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 186
Hsp92II CATG 3 cut(s) 113, 184, 300
Ksp22I TGATCA 1 cut(s) 106
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 94, 106, 259
LpnPI CCDG 4 cut(s) 57, 160, 270, 298
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 2 cut(s) 24, 299
MaeI CTAG 1 cut(s) 18
MalI GATC 3 cut(s) 96, 108, 261
MboI GATC 3 cut(s) 94, 106, 259
MboII GAAGA 5 cut(s) 6, 34, 54, 148, 281
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 67
MnlI CCTC 1 cut(s) 228
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 4 cut(s) 29, 209, 267, 301
MspI CCGG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 85, 186
NdeII GATC 3 cut(s) 94, 106, 259
NlaIII CATG 3 cut(s) 113, 184, 300
NlaIV GGNNCC 1 cut(s) 216
OliI CACNNNNGTG 1 cut(s) 209
PagI TCATGA 1 cut(s) 109
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 2 cut(s) 10, 117
PspN4I GGNNCC 1 cut(s) 216
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 4 cut(s) 29, 209, 267, 301
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 9, 116
Sau3AI GATC 3 cut(s) 94, 106, 259
SduI GDGCHC 1 cut(s) 158
SetI ASST 5 cut(s) 76, 179, 196, 284, 334
SfaNI GCATC 2 cut(s) 24, 299
SmiMI CAYNNNNRTG 4 cut(s) 29, 209, 267, 301
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 1 cut(s) 67
SsiI CCGC 1 cut(s) 158
SspMI CTAG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 104, 165
TaqI TCGA 1 cut(s) 152
TasI AATT 1 cut(s) 67
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 2 cut(s) 8, 115
TspDTI ATGAA 1 cut(s) 149
XbaI TCTAGA 1 cut(s) 17
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.