Rh2AG377900

EPIDERMAL PATTERNING FACTOR-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006184
Physical Location & Seq
Reverse (-)
56578919 .. 56580101
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG377900.1

Sequence Viewer

Length: 351 bp
ATGGCTCCATCCACCAGAAACTATCCGGTAAATGGCCTCAAAGTAGCAACCCTCACTGCGGCTTTCATCTTTTTCTTCTTCACAATTCTACTTTCCAAATCAGTGGATTCCAAACATTCGAGTCATAGGGAGAGCAGTGATATGCTGCAGCAAAGAAAAATGGTTCTGGGTTCAAGGCCTCCTGGATGTGAGAACAAGTGTTTGAATTGCAGGCCTTGCCTTGCTACTCTGGTCATTCCATCTCATCATAAAACAAAGCTTTCCAGTTTGTCATCTCATAATGATGAAGATGATAACTATTATCTACTCTCATGGAAATGCAAATGTGGACAGAAGCTATTTCAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

116

Amino Acids

13.09

Weight (kDa)

9.28

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 55 - 116 7.1e-21 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 32, 58
AgsI TTSAA 3 cut(s) 174, 205, 344
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 2 cut(s) 259, 337
AluI AGCT 2 cut(s) 259, 337
AoxI GGCC 3 cut(s) 34, 176, 212
ApeKI GCWGC 2 cut(s) 145, 148
BbvI GCAGC 2 cut(s) 132, 160
BccI CCATC 2 cut(s) 16, 247
BciT130I CCWGG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 146
BisI GCNGC 3 cut(s) 60, 146, 149
BlsI GCNGC 3 cut(s) 61, 147, 150
Bme1390I CCNGG 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 58
Bse1I ACTGG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 8, 191
BseLI CCNNNNNNNGG 2 cut(s) 32, 58
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 2 cut(s) 132, 160
BshFI GGCC 3 cut(s) 36, 178, 214
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 32, 58
BsnI GGCC 3 cut(s) 36, 178, 214
BspACI CCGC 1 cut(s) 59
BspANI GGCC 3 cut(s) 36, 178, 214
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 150
BsrI ACTGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 212
BstF5I GGATG 2 cut(s) 8, 191
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 132, 160
BstXI CCANNNNNNTGG 1 cut(s) 103
BsuRI GGCC 3 cut(s) 36, 178, 214
BtsCI GGATG 2 cut(s) 8, 191
BtsI GCAGTG 2 cut(s) 54, 142
BtsIMutI CAGTG 3 cut(s) 54, 108, 142
Cac8I GCNNGC 1 cut(s) 212
CviAII CATG 2 cut(s) 312, 348
CviJI RGCY 7 cut(s) 5, 36, 62, 178, 214, 259, 337
CviKI_1 RGCY 7 cut(s) 5, 36, 62, 178, 214, 259, 337
Eco147I AGGCCT 2 cut(s) 178, 214
EcoRII CCWGG 1 cut(s) 181
FaeI CATG 2 cut(s) 315, 351
FaiI YATR 6 cut(s) 126, 143, 249, 279, 313, 349
FatI CATG 2 cut(s) 311, 347
Fnu4HI GCNGC 3 cut(s) 60, 146, 149
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 60, 146, 149
GluI GCNGC 3 cut(s) 60, 146, 149
HaeIII GGCC 3 cut(s) 36, 178, 214
HapII CCGG 1 cut(s) 26
Hin1II CATG 2 cut(s) 315, 351
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 2 cut(s) 107, 121
HpaII CCGG 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 329
Hpy8I GTNNAC 1 cut(s) 329
HpyCH4V TGCA 3 cut(s) 148, 210, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
Hsp92II CATG 2 cut(s) 315, 351
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 28, 39, 152, 168, 195, 196, 215, 277
Lsp1109I GCAGC 2 cut(s) 132, 160
MboII GAAGA 3 cut(s) 67, 70, 299
MluCI AATT 2 cut(s) 84, 205
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 3 cut(s) 47, 62, 189
MslI CAYNNNNRTG 2 cut(s) 282, 316
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 216
NlaIII CATG 2 cut(s) 315, 351
NlaIV GGNNCC 1 cut(s) 6
PceI AGGCCT 2 cut(s) 178, 214
PfeI GAWTC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 3 cut(s) 61, 147, 150
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 150
RseI CAYNNNNRTG 2 cut(s) 282, 316
SatI GCNGC 3 cut(s) 60, 146, 149
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 183
SetI ASST 2 cut(s) 261, 339
SfcI CTRYAG 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 282, 316
Sse9I AATT 2 cut(s) 84, 205
SseBI AGGCCT 2 cut(s) 178, 214
SsiI CCGC 1 cut(s) 59
StuI AGGCCT 2 cut(s) 178, 214
StyD4I CCNGG 1 cut(s) 181
TaqI TCGA 1 cut(s) 119
TasI AATT 2 cut(s) 84, 205
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 3 cut(s) 61, 108, 142
TseI GCWGC 2 cut(s) 145, 148
TspDTI ATGAA 2 cut(s) 55, 300
TspRI CASTG 3 cut(s) 61, 108, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.