RLG00000015935

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006184
Physical Location & Seq
Reverse (-)
2586001 .. 2586436
436 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015935

Sequence Viewer

Length: 333 bp
ATGGCTGCTTCTTCTAGAATCATTCTGATGATGCTCATCTTCTGCTTCACATTCCTTTCTTCCAATTCAGGTGAGCCATTGTTGCCAAGAGATCAGCATGGTGATCATGAGCAGCAGTTGAAAAAGCAAATGAAGATTGCGTTGGGTTCGAGCCCGCCGCGGTGTGTTAACAGGTGCATGAGTTGCAGACCTTGTACGGCCACTCTTGTGGTTCCTCCACACCACCACAAGATAAACAATCTCAAGGCCACACCGGATCATTACGATGGAGATGAGACCTATTATCTTCTCTCATGGAAATGTAGATGCAGGAATAAGTTGTTCCAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

111

Amino Acids

12.62

Weight (kDa)

9.1

Isoelectric Point (pI)

59.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 48 - 110 5.7e-20 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 160
AciI CCGC 3 cut(s) 155, 158, 160
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 198
AfaI GTAC 1 cut(s) 196
AgsI TTSAA 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AleI CACNNNNGTG 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 1 cut(s) 264
AoxI GGCC 2 cut(s) 198, 246
ApeKI GCWGC 2 cut(s) 5, 112
AsuHPI GGTGA 2 cut(s) 83, 113
BanII GRGCYC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 213
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 1 cut(s) 15
BisI GCNGC 3 cut(s) 6, 113, 158
BlsI GCNGC 3 cut(s) 7, 114, 159
BmiI GGNNCC 1 cut(s) 213
BmsI GCATC 2 cut(s) 21, 296
BpuEI CTTGAG 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 253
Bse8I GATNNNNATC 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 158
BseJI GATNNNNATC 1 cut(s) 35
BseXI GCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 160
BshFI GGCC 2 cut(s) 200, 248
BsiSI CCGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 2 cut(s) 200, 248
Bso31I GGTCTC 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 91, 103, 256
BspACI CCGC 3 cut(s) 155, 158, 160
BspANI GGCC 2 cut(s) 200, 248
BspFNI CGCG 1 cut(s) 160
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 213
BspPI GGATC 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 3 cut(s) 91, 103, 256
BstAPI GCANNNNNTGC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 158
BstFNI CGCG 1 cut(s) 160
BstKTI GATC 3 cut(s) 94, 106, 259
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 3 cut(s) 91, 103, 256
BstMWI GCNNNNNNNGC 2 cut(s) 82, 183
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 208
BsuRI GGCC 2 cut(s) 200, 248
BtgI CCRYGG 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 155
CciI TCATGA 1 cut(s) 106
Cfr42I CCGCGG 1 cut(s) 161
Csp6I GTAC 1 cut(s) 195
CviAII CATG 4 cut(s) 98, 107, 178, 294
CviJI RGCY 5 cut(s) 5, 76, 153, 200, 248
CviKI_1 RGCY 5 cut(s) 5, 76, 153, 200, 248
CviQI GTAC 1 cut(s) 195
DpnI GATC 3 cut(s) 93, 105, 258
DpnII GATC 3 cut(s) 91, 103, 256
EaeI YGGCCR 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 4 cut(s) 101, 110, 181, 297
FaiI YATR 4 cut(s) 99, 108, 179, 295
FatI CATG 4 cut(s) 97, 106, 177, 293
FauI CCCGC 1 cut(s) 162
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 6, 113, 158
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 3 cut(s) 6, 113, 158
FspBI CTAG 1 cut(s) 15
GluI GCNGC 3 cut(s) 6, 113, 158
HaeIII GGCC 2 cut(s) 200, 248
HapII CCGG 1 cut(s) 254
Hin1II CATG 4 cut(s) 101, 110, 181, 297
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 1 cut(s) 18
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 83, 113
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 2 cut(s) 15, 107
Hpy8I GTNNAC 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 177, 186, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 183
Hsp92II CATG 4 cut(s) 101, 110, 181, 297
Ksp22I TGATCA 1 cut(s) 103
KspAI GTTAAC 1 cut(s) 169
KspI CCGCGG 1 cut(s) 161
Kzo9I GATC 3 cut(s) 91, 103, 256
LpnPI CCDG 4 cut(s) 54, 157, 267, 295
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 2 cut(s) 21, 296
MaeI CTAG 1 cut(s) 15
MalI GATC 3 cut(s) 93, 105, 258
MboI GATC 3 cut(s) 91, 103, 256
MboII GAAGA 5 cut(s) 3, 31, 51, 145, 278
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 1 cut(s) 64
MnlI CCTC 1 cut(s) 225
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 4 cut(s) 26, 206, 264, 298
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 82, 183
NdeII GATC 3 cut(s) 91, 103, 256
NlaIII CATG 4 cut(s) 101, 110, 181, 297
NlaIV GGNNCC 1 cut(s) 213
OliI CACNNNNGTG 1 cut(s) 206
PagI TCATGA 1 cut(s) 106
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 7, 114, 159
PspN4I GGNNCC 1 cut(s) 213
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
RseI CAYNNNNRTG 4 cut(s) 26, 206, 264, 298
SacII CCGCGG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 3 cut(s) 6, 113, 158
Sau3AI GATC 3 cut(s) 91, 103, 256
SduI GDGCHC 1 cut(s) 155
SetI ASST 5 cut(s) 73, 176, 193, 281, 331
SfaNI GCATC 2 cut(s) 21, 296
Sfr303I CCGCGG 1 cut(s) 161
SgrBI CCGCGG 1 cut(s) 161
SmiMI CAYNNNNRTG 4 cut(s) 26, 206, 264, 298
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 64
SsiI CCGC 3 cut(s) 155, 158, 160
SspMI CTAG 1 cut(s) 15
TaqI TCGA 1 cut(s) 149
TasI AATT 1 cut(s) 64
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseI GCWGC 2 cut(s) 5, 112
TspDTI ATGAA 1 cut(s) 146
XbaI TCTAGA 1 cut(s) 14
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.