RchiOBHm_Chr2g0088241

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006184
Physical Location & Seq
Reverse (-)
2882666 .. 2883621
956 bp
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UTR
Exon/CDS
Intron
PRQ46361

Sequence Viewer

Length: 336 bp
ATGATGGCTGCTTCTTCTAGAATCATTCTGATGATGCTCATCTTCTGTCTTACATTCCTTTCTTCCAATTCAGGTGAGCCATTGTTGCCAAGAGATCAGCATGGTGATCATGAGCAGCAGTTGAAAAAGCAAATGAAGATGGCGTTGGGTTCGAGCCCGCCGCGGTGTGTTAACAGGTGCATGAGTTGCAGACCTTGTACGGCCACTCTTGTGGTTCCTCCACACCACCACAAGATAAACAATCTCAAGACCACACCGGATCATTACGACGGAGATGAGACCTATTATCTTCTCTCATGGAAATGTAGATGCAGGAATAAGTTGTTCCAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

111

Amino Acids

12.76

Weight (kDa)

9.1

Isoelectric Point (pI)

65.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 49 - 111 3.9e-20 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 163
AciI CCGC 3 cut(s) 158, 161, 163
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 201
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 1 cut(s) 124
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AleI CACNNNNGTG 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 267
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 2 cut(s) 8, 115
AsuHPI GGTGA 2 cut(s) 86, 116
BanII GRGCYC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 216
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 18
BisI GCNGC 3 cut(s) 9, 116, 161
BlsI GCNGC 3 cut(s) 10, 117, 162
BmiI GGNNCC 1 cut(s) 216
BmsI GCATC 2 cut(s) 24, 299
BpuEI CTTGAG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 161
BseJI GATNNNNATC 1 cut(s) 38
BseXI GCAGC 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 1 cut(s) 203
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 3 cut(s) 94, 106, 259
BspACI CCGC 3 cut(s) 158, 161, 163
BspANI GGCC 1 cut(s) 203
BspFNI CGCG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 3 cut(s) 94, 106, 259
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 163
BstKTI GATC 3 cut(s) 97, 109, 262
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 3 cut(s) 94, 106, 259
BstMWI GCNNNNNNNGC 2 cut(s) 85, 186
BstUI CGCG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 211
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 158
CciI TCATGA 1 cut(s) 109
Cfr42I CCGCGG 1 cut(s) 164
Csp6I GTAC 1 cut(s) 198
CviAII CATG 4 cut(s) 101, 110, 181, 297
CviJI RGCY 4 cut(s) 8, 79, 156, 203
CviKI_1 RGCY 4 cut(s) 8, 79, 156, 203
CviQI GTAC 1 cut(s) 198
DpnI GATC 3 cut(s) 96, 108, 261
DpnII GATC 3 cut(s) 94, 106, 259
EaeI YGGCCR 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 158
FaeI CATG 4 cut(s) 104, 113, 184, 300
FaiI YATR 4 cut(s) 102, 111, 182, 298
FatI CATG 4 cut(s) 100, 109, 180, 296
FauI CCCGC 1 cut(s) 165
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 9, 116, 161
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 3 cut(s) 9, 116, 161
FspBI CTAG 1 cut(s) 18
GluI GCNGC 3 cut(s) 9, 116, 161
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 257
Hin1II CATG 4 cut(s) 104, 113, 184, 300
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 21
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 1 cut(s) 257
HphI GGTGA 2 cut(s) 86, 116
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 3 cut(s) 18, 110, 247
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 272
HpyCH4V TGCA 3 cut(s) 180, 189, 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 186
Hsp92II CATG 4 cut(s) 104, 113, 184, 300
Ksp22I TGATCA 1 cut(s) 106
KspAI GTTAAC 1 cut(s) 172
KspI CCGCGG 1 cut(s) 164
Kzo9I GATC 3 cut(s) 94, 106, 259
LpnPI CCDG 4 cut(s) 57, 160, 270, 298
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 2 cut(s) 24, 299
MaeI CTAG 1 cut(s) 18
MalI GATC 3 cut(s) 96, 108, 261
MboI GATC 3 cut(s) 94, 106, 259
MboII GAAGA 5 cut(s) 6, 34, 54, 148, 281
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 67
MnlI CCTC 1 cut(s) 228
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 3 cut(s) 29, 209, 301
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 85, 186
NdeII GATC 3 cut(s) 94, 106, 259
NlaIII CATG 4 cut(s) 104, 113, 184, 300
NlaIV GGNNCC 1 cut(s) 216
OliI CACNNNNGTG 1 cut(s) 209
PagI TCATGA 1 cut(s) 109
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 3 cut(s) 10, 117, 162
PspN4I GGNNCC 1 cut(s) 216
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 3 cut(s) 29, 209, 301
SacII CCGCGG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 3 cut(s) 9, 116, 161
Sau3AI GATC 3 cut(s) 94, 106, 259
SduI GDGCHC 1 cut(s) 158
SetI ASST 5 cut(s) 76, 179, 196, 284, 334
SfaNI GCATC 2 cut(s) 24, 299
Sfr303I CCGCGG 1 cut(s) 164
SgrBI CCGCGG 1 cut(s) 164
SmiMI CAYNNNNRTG 3 cut(s) 29, 209, 301
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 1 cut(s) 67
SsiI CCGC 3 cut(s) 158, 161, 163
SspMI CTAG 1 cut(s) 18
TaqI TCGA 1 cut(s) 152
TasI AATT 1 cut(s) 67
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 2 cut(s) 8, 115
TspDTI ATGAA 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 285
XbaI TCTAGA 1 cut(s) 17
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.