AT1G80210

Prokaryotic homologs of the JAB domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007344
Physical Location & Seq
Reverse (-)
30163129 .. 30165755
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80210.2

Sequence Viewer

Length: 1221 bp
ATGTCTCTTACATGCGTTAATATGTCCGAGGATGTCTGGTTGACTTGCCTCACTCACGCATTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTCGGCGACATCGAGTACTCAAAGGACGGGGGAAGTGCCACAGCTATGATCTGGGGAGCATCGCCTCAGTCACGGTCTGATCGGCAGAAGGATAGAGTTGAAACCAATCCTGAACAACTGGCTGCTGCTTCTGCTCAGGCTGATAGAATGACGATATCAACGGGCAGAACTACACGGGTCATTGGATGGTACCACTCCCATCCTCATATTACCGTTCTTCCTTCCCATGTCGATGTTCGAACACAAGCTATGTATCAGCTTTTAGATTCTGGTTTTATTGGCCTCATCTTTTCCTGTTTTAGTGAAGATGCTAACAAGGTTGGCAGAATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAAGCCGAATAGTATTCCTAAATCAATGAGCCTGGTTCTTGCAAATAAAGATTCTGTTATCGATTTAGAATCTTCATTTAGTTCTTCGGACTCGATATACCAGAGATCGTCTTCTGCTCGGGGAGACAATCCTGAGCTCGACACAAGTGATACAGCTACAACTTCCGGATCTAAGGGTGGAGGACGCGTTTCAGATTTTGAGGCTTTCTTTGTGAACAATACTGAGGCCAACAACACCAGAAGAGATGGAACAAGTGGAAACTACAGCAGCACAGCAATAGAAATTGACTCGATGGACATGTCTGAAAGTATGCAAGAGGCAATGCACCGCTCAAATTTAGAAACCAGTGGTGTGGGGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCGACTTCATCCCTTCTTCAACTCAATTCACCTTTAGCATCTTTTAAAAGCCTGCAACGAGTACTCTACGAGGAGGAACGAGCAGCGTACCACCAATCCGTGCAGCAAAGCAAGAGAGACGGGAGAGTTCATCCTCTTGCTTTCATTCACAACACATCAACATATCAGGCTTCCATGTGCAAGTTAATAGAATACTGCTTGAGTCCTGCCATTAACGCACTTCAAGATAGGCTGAAGGAGAACAAGATCCGGTTAGCAATGCTGATGGATGAAGCTGAAGTTTTGGAAGCACAGAAACTGAAAGGAGCAGAGACAAGCGGGGGAGCATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGACGATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006302 GO:0006325 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009314 GO:0009628 GO:0009893 GO:0009987 GO:0010212 GO:0010564 GO:0010604 GO:0010948 GO:0016043 GO:0016569 GO:0016570 GO:0016578 GO:0016579 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0019783 GO:0023052 GO:0031323 GO:0031325 GO:0031570 GO:0031572 GO:0031593 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0036211 GO:0036459 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045739 GO:0045786 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070011 GO:0070531 GO:0070536 GO:0070537 GO:0070552 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0101005 GO:0140030 GO:0140096 GO:1901360 GO:1901564 GO:1901987 GO:1901988 GO:1902749 GO:1902750 GO:2001020 GO:2001022
KEGG Pathways
Metabolic & Signaling
ko03440 ko04621 map03440 map04621
Pfam Domains
Protein Families
JAB

Protein Analysis

406

Amino Acids

44.48

Weight (kDa)

5.81

Isoelectric Point (pI)

60.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 3 - 119 2.2e-17 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB PF14464 10 - 114 2.4e-07 Prokaryotic homologs of the JAB domain
BRCC36_C PF18110 294 - 367 9.1e-22 BRCC36 C-terminal helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 285
AccBSI CCGCTC 1 cut(s) 786
AccII CGCG 1 cut(s) 642
AccIII TCCGGA 1 cut(s) 620
AciI CCGC 2 cut(s) 784, 1164
AclWI GGATC 2 cut(s) 631, 1087
AcsI RAATTY 1 cut(s) 790
AcuI CTGAAG 2 cut(s) 1100, 1143
AfaI GTAC 4 cut(s) 113, 287, 909, 935
AflIII ACRYGT 2 cut(s) 640, 753
AgsI TTSAA 3 cut(s) 197, 866, 1070
AjnI CCWGG 1 cut(s) 486
AluBI AGCT 6 cut(s) 140, 344, 355, 592, 611, 1121
AluI AGCT 6 cut(s) 140, 344, 355, 592, 611, 1121
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 6 cut(s) 9, 65, 95, 573, 957, 1151
AlwI GGATC 2 cut(s) 631, 1087
AlwNI CAGNNNCTG 1 cut(s) 1144
Ama87I CYCGRG 1 cut(s) 573
Aor13HI TCCGGA 1 cut(s) 620
AoxI GGCC 2 cut(s) 376, 681
ApeKI GCWGC 6 cut(s) 218, 221, 723, 929, 949, 1197
ApoI RAATTY 1 cut(s) 790
Asp718I GGTACC 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 867
AsuII TTCGAA 1 cut(s) 334
AvaI CYCGRG 1 cut(s) 573
BanI GGYRCC 1 cut(s) 285
BanII GRGCYC 1 cut(s) 594
BbsI GAAGAC 3 cut(s) 438, 558, 1216
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 6 cut(s) 205, 208, 735, 941, 961, 1209
BccI CCATC 6 cut(s) 276, 303, 446, 695, 742, 1105
BciT130I CCWGG 1 cut(s) 488
BcoDI GTCTC 6 cut(s) 9, 65, 95, 573, 957, 1151
BfmI CTRYAG 1 cut(s) 718
BisI GCNGC 6 cut(s) 219, 222, 724, 930, 950, 1198
BlsI GCNGC 6 cut(s) 220, 223, 725, 931, 951, 1199
BmcAI AGTACT 2 cut(s) 113, 909
Bme1390I CCNGG 1 cut(s) 488
BmeT110I CYCGRG 1 cut(s) 573
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 488
BmsI GCATC 4 cut(s) 164, 394, 893, 1181
BpiI GAAGAC 3 cut(s) 438, 558, 1216
Bpu10I CCTNAGC 2 cut(s) 231, 588
Bpu14I TTCGAA 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 1066
Bsa29I ATCGAT 1 cut(s) 516
BsaI GGTCTC 2 cut(s) 65, 95
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 2 cut(s) 620, 1095
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bse1I ACTGG 3 cut(s) 219, 442, 801
Bse3DI GCAATG 2 cut(s) 783, 1110
BseAI TCCGGA 1 cut(s) 620
BseBI CCWGG 1 cut(s) 488
BseCI ATCGAT 1 cut(s) 516
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 6 cut(s) 37, 287, 295, 854, 976, 1120
BseMI GCAATG 2 cut(s) 783, 1110
BseMII CTCAG 4 cut(s) 176, 245, 579, 669
BseNI ACTGG 3 cut(s) 219, 442, 801
BseRI GAGGAG 1 cut(s) 932
BseXI GCAGC 6 cut(s) 205, 208, 735, 941, 961, 1209
BsgI GTGCAG 1 cut(s) 968
Bsh1236I CGCG 1 cut(s) 642
Bsh1285I CGRYCG 1 cut(s) 1217
BshFI GGCC 2 cut(s) 378, 683
BshNI GGYRCC 1 cut(s) 285
BshVI ATCGAT 1 cut(s) 516
BsiEI CGRYCG 1 cut(s) 1217
BsiHKAI GWGCWC 1 cut(s) 594
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 2 cut(s) 621, 1096
BslFI GGGAC 1 cut(s) 815
BsmAI GTCTC 6 cut(s) 9, 65, 95, 573, 957, 1151
BsmBI CGTCTC 1 cut(s) 957
BsmFI GGGAC 1 cut(s) 815
BsnI GGCC 2 cut(s) 378, 683
Bso31I GGTCTC 2 cut(s) 65, 95
BsoBI CYCGRG 1 cut(s) 573
Bsp119I TTCGAA 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 594
Bsp13I TCCGGA 1 cut(s) 620
Bsp143I GATC 7 cut(s) 81, 144, 175, 560, 623, 1092, 1214
BspACI CCGC 2 cut(s) 784, 1164
BspANI GGCC 2 cut(s) 378, 683
BspCNI CTCAG 4 cut(s) 175, 244, 580, 670
BspDI ATCGAT 1 cut(s) 516
BspEI TCCGGA 1 cut(s) 620
BspFNI CGCG 1 cut(s) 642
BspLI GGNNCC 1 cut(s) 287
BspPI GGATC 2 cut(s) 631, 1087
BspT104I TTCGAA 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 285
BspTNI GGTCTC 2 cut(s) 65, 95
BsrBI CCGCTC 1 cut(s) 786
BsrDI GCAATG 2 cut(s) 783, 1110
BsrI ACTGG 3 cut(s) 219, 442, 801
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 7 cut(s) 81, 144, 175, 560, 623, 1092, 1214
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 3 cut(s) 171, 310, 1190
Bst6I CTCTTC 2 cut(s) 72, 691
BstBI TTCGAA 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 899
BstDEI CTNAG 5 cut(s) 162, 231, 588, 627, 678
BstF5I GGATG 6 cut(s) 37, 287, 295, 854, 976, 1120
BstFNI CGCG 1 cut(s) 642
BstKTI GATC 7 cut(s) 84, 147, 178, 563, 626, 1095, 1217
BstMAI GTCTC 6 cut(s) 9, 65, 95, 573, 957, 1151
BstMBI GATC 7 cut(s) 81, 144, 175, 560, 623, 1092, 1214
BstMCI CGRYCG 1 cut(s) 1217
BstMWI GCNNNNNNNGC 3 cut(s) 227, 1061, 1203
BstNI CCWGG 1 cut(s) 488
BstNSI RCATGY 2 cut(s) 15, 757
BstSCI CCNGG 1 cut(s) 486
BstSFI CTRYAG 1 cut(s) 718
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 6 cut(s) 205, 208, 735, 941, 961, 1209
BstV2I GAAGAC 3 cut(s) 438, 558, 1216
BstX2I RGATCY 2 cut(s) 623, 1092
BstXI CCANNNNNNTGG 1 cut(s) 808
BstYI RGATCY 2 cut(s) 623, 1092
Bsu15I ATCGAT 1 cut(s) 516
BsuRI GGCC 2 cut(s) 378, 683
BsuTUI ATCGAT 1 cut(s) 516
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 6 cut(s) 37, 287, 295, 854, 976, 1120
BtsIMutI CAGTG 1 cut(s) 808
Cac8I GCNNGC 1 cut(s) 899
CaiI CAGNNNCTG 1 cut(s) 1144
ClaI ATCGAT 1 cut(s) 516
CseI GACGC 1 cut(s) 648
Csp6I GTAC 4 cut(s) 112, 286, 908, 934
CviAII CATG 6 cut(s) 12, 85, 323, 754, 839, 1021
CviQI GTAC 4 cut(s) 112, 286, 908, 934
DdeI CTNAG 5 cut(s) 162, 231, 588, 627, 678
DpnI GATC 7 cut(s) 83, 146, 177, 562, 625, 1094, 1216
DpnII GATC 7 cut(s) 81, 144, 175, 560, 623, 1092, 1214
DraI TTTAAA 1 cut(s) 892
Eam1104I CTCTTC 2 cut(s) 72, 691
EarI CTCTTC 2 cut(s) 72, 691
Ecl136II GAGCTC 1 cut(s) 592
Eco24I GRGCYC 1 cut(s) 594
Eco31I GGTCTC 2 cut(s) 65, 95
Eco32I GATATC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 592
Eco57I CTGAAG 2 cut(s) 1100, 1143
Eco88I CYCGRG 1 cut(s) 573
EcoICRI GAGCTC 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 486
EcoRV GATATC 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 594
Esp3I CGTCTC 1 cut(s) 957
FaeI CATG 6 cut(s) 15, 88, 326, 757, 842, 1024
FalI AAGNNNNNCTT 2 cut(s) 819, 851
FaqI GGGAC 1 cut(s) 815
FatI CATG 6 cut(s) 11, 84, 322, 753, 838, 1020
FauI CCCGC 1 cut(s) 1157
Fnu4HI GCNGC 6 cut(s) 219, 222, 724, 930, 950, 1198
FokI GGATG 6 cut(s) 44, 282, 294, 841, 963, 1127
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 6 cut(s) 219, 222, 724, 930, 950, 1198
GluI GCNGC 6 cut(s) 219, 222, 724, 930, 950, 1198
HaeIII GGCC 2 cut(s) 378, 683
HapII CCGG 2 cut(s) 621, 1096
HgaI GACGC 1 cut(s) 648
Hin1II CATG 6 cut(s) 15, 88, 326, 757, 842, 1024
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 7 cut(s) 362, 423, 506, 524, 545, 743, 1048
HpaII CCGG 2 cut(s) 621, 1096
HphI GGTGA 1 cut(s) 867
Hpy166II GTNNAC 3 cut(s) 42, 670, 1186
Hpy188I TCNGA 6 cut(s) 28, 175, 451, 544, 649, 760
Hpy188III TCNNGA 4 cut(s) 206, 587, 621, 1070
Hpy8I GTNNAC 3 cut(s) 42, 670, 1186
HpyAV CCTTC 5 cut(s) 104, 178, 327, 869, 1075
HpyCH4III ACNGT 3 cut(s) 171, 310, 1190
HpyCH4V TGCA 6 cut(s) 497, 769, 781, 901, 949, 1026
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 1061, 1203
HpyF3I CTNAG 5 cut(s) 162, 231, 588, 627, 678
Hsp92II CATG 6 cut(s) 15, 88, 326, 757, 842, 1024
Kpn2I TCCGGA 1 cut(s) 620
KpnI GGTACC 1 cut(s) 289
Kzo9I GATC 7 cut(s) 81, 144, 175, 560, 623, 1092, 1214
LmnI GCTCC 3 cut(s) 152, 1151, 1169
Lsp1109I GCAGC 6 cut(s) 205, 208, 735, 941, 961, 1209
LweI GCATC 4 cut(s) 164, 394, 893, 1181
MaeIII GTNAC 1 cut(s) 165
MalI GATC 7 cut(s) 83, 146, 177, 562, 625, 1094, 1216
MbiI CCGCTC 1 cut(s) 786
MboI GATC 7 cut(s) 81, 144, 175, 560, 623, 1092, 1214
MflI RGATCY 2 cut(s) 623, 1092
MhlI GDGCHC 1 cut(s) 594
MluCI AATT 3 cut(s) 738, 790, 871
MluI ACGCGT 1 cut(s) 640
MlyI GAGTC 3 cut(s) 539, 737, 1057
MroI TCCGGA 1 cut(s) 620
MseI TTAA 4 cut(s) 18, 891, 1031, 1059
MslI CAYNNNNRTG 2 cut(s) 140, 327
MspI CCGG 2 cut(s) 621, 1096
MspR9I CCNGG 1 cut(s) 488
MvaI CCWGG 1 cut(s) 488
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 3 cut(s) 227, 1061, 1203
NdeII GATC 7 cut(s) 81, 144, 175, 560, 623, 1092, 1214
NlaIII CATG 6 cut(s) 15, 88, 326, 757, 842, 1024
NlaIV GGNNCC 1 cut(s) 287
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 165
NspI RCATGY 2 cut(s) 15, 757
NspV TTCGAA 1 cut(s) 334
PciI ACATGT 1 cut(s) 753
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 4 cut(s) 362, 423, 506, 524
PkrI GCNGC 6 cut(s) 220, 223, 725, 931, 951, 1199
Ple19I CGATCG 1 cut(s) 1217
PleI GAGTC 3 cut(s) 539, 737, 1056
PpsI GAGTC 3 cut(s) 539, 737, 1056
PscI ACATGT 1 cut(s) 753
Psp124BI GAGCTC 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 1 cut(s) 287
PstNI CAGNNNCTG 1 cut(s) 1144
PsuI RGATCY 2 cut(s) 623, 1092
PvuI CGATCG 1 cut(s) 1217
RsaI GTAC 4 cut(s) 113, 287, 909, 935
RsaNI GTAC 4 cut(s) 112, 286, 908, 934
RseI CAYNNNNRTG 2 cut(s) 140, 327
SacI GAGCTC 1 cut(s) 594
SaqAI TTAA 4 cut(s) 18, 891, 1031, 1059
SatI GCNGC 6 cut(s) 219, 222, 724, 930, 950, 1198
Sau3AI GATC 7 cut(s) 81, 144, 175, 560, 623, 1092, 1214
ScaI AGTACT 2 cut(s) 113, 909
SchI GAGTC 3 cut(s) 539, 737, 1057
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 1 cut(s) 594
SetI ASST 8 cut(s) 142, 346, 357, 417, 594, 613, 880, 1123
SfaNI GCATC 4 cut(s) 164, 394, 893, 1181
SfcI CTRYAG 1 cut(s) 718
SfuI TTCGAA 1 cut(s) 334
SmiMI CAYNNNNRTG 2 cut(s) 140, 327
SmlI CTYRAG 1 cut(s) 1045
SmoI CTYRAG 1 cut(s) 1045
Sse9I AATT 3 cut(s) 738, 790, 871
SsiI CCGC 2 cut(s) 784, 1164
SstI GAGCTC 1 cut(s) 594
StyD4I CCNGG 1 cut(s) 486
TaaI ACNGT 3 cut(s) 171, 310, 1190
TaqI TCGA 7 cut(s) 108, 327, 334, 516, 548, 594, 746
TaqII GACCGA 1 cut(s) 89
TasI AATT 3 cut(s) 738, 790, 871
TatI WGTACW 2 cut(s) 111, 907
TfiI GAWTC 4 cut(s) 362, 423, 506, 524
Tru1I TTAA 4 cut(s) 18, 891, 1031, 1059
Tru9I TTAA 4 cut(s) 18, 891, 1031, 1059
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 6 cut(s) 218, 221, 723, 929, 949, 1197
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 6 cut(s) 519, 827, 843, 965, 979, 1131
TspGWI ACGGA 1 cut(s) 934
TspRI CASTG 1 cut(s) 808
XapI RAATTY 1 cut(s) 790
XceI RCATGY 2 cut(s) 15, 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 449
ZrmI AGTACT 2 cut(s) 113, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.