Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006440.1

Orthogroup ID

OG0007344

Physical Location & Seq

Genomic Coordinates Reverse (-)

25072 .. 29414

Gene Structure 4343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006440.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgacaatatcatctggaagaacaactagagtgattgggtggtaccattcacatcctcatattacggttcttccttcccatgttgatgtacggactcaggcaatgtatcaacttctagattctgggttcatcgggctgatattttcctgtttcagtgaagatataaacaaggttggacgaatacaagtcattgcctttcagtcctcagatgggaagcagcatcacatgtcaagacctatatctttatctccagtaaataaaagttcaattatagaagttgactcgtctttaagtacctcagaaaatgcaccagctggcggaagatcttcagaacttgggcatttctttgctagtgctgaggcaaatcatcaagacagagaaagaaccggagggaactaccccacagaaacttcagccaacaatattgttgacatagatcccatggatatgtctgagagtatgcaagaagcaatgcaccgttcgaatttggatatgagtggtgctgagtatgtaagaaaagaagttcctctttatgttttaccgacctcgtctcttattaagcttgattcacctctaatgtcatttacggaattgcaacgagtactgtatgaggaggagcgagcggcatataaccaagcaatcttgcaaaatatgagggacgggaaaatgcatccacttactttcatacatcacacatcaatgtatcaatcttccatgtgcaaattaatcgaatattgcttaagtcctgccataaatgcactgcagtgtcggttaagagagaatgaatttcggttggcattgctcactgatgaagtgaagggtttggagaacgaaacacgtagaggaagcgagtcaagttctggatctcctcgtcaagttttgtcgcctacactccgaggaagtactcctttaggccatagggacttgttcagttcaaggagtgtaacaggtcctggtagtcgaagcagaaaaggatcgtcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006302 GO:0006325 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009314 GO:0009628 GO:0009893 GO:0009987 GO:0010212 GO:0010564 GO:0010604 GO:0010948 GO:0016043 GO:0016569 GO:0016570 GO:0016578 GO:0016579 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0019783 GO:0023052 GO:0031323 GO:0031325 GO:0031570 GO:0031572 GO:0031593 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0036211 GO:0036459 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045739 GO:0045786 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070011 GO:0070531 GO:0070536 GO:0070537 GO:0070552 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0101005 GO:0140030 GO:0140096 GO:1901360 GO:1901564 GO:1901987 GO:1901988 GO:1902749 GO:1902750 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko03440 ko04621 map03440 map04621

Pfam Domains

Protein Families

JAB

Protein Analysis

327

Amino Acids

36.34

Weight (kDa)

6.5

Isoelectric Point (pI)

70.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80210 AT1G80210 AT3G06820 AT3G06820 AT3G06820
fragaria_vesca	FvH4_6g30340 FvH4_6g30340 FvH4_6g30340
malus_domestica	MD09G1221000.v1.1 MD17G1204400.v1.1
prunus_persica	Prupe.3G079900_v2.0.a1 Prupe.3G079900_v2.0.a1 Prupe.3G079900_v2.0.a1
pyrus_communis	pycom1094g00120 pycom17g20830
rosa_chinensis	RchiOBHm_Chr2g0136621
rosa_laevigata	RLG00000019542
rosa_multiflora	Rmu_sc0006440.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108160
rosa_rugosa	Rorug02G0332100
rosa_samantha	Rh2AG382900 Rh2BG389500 Rh2CG369200 Rh2DG406300
rosa_wichuraiana	Rw2G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	42
AccBSI	CCGCTC	1 cut(s)	623
AciI	CCGC	2 cut(s)	318, 623
AclWI	GGATC	3 cut(s)	431, 871, 982
AcsI	RAATTY	2 cut(s)	484, 785
AcuI	CTGAAG	2 cut(s)	312, 396
AfaI	GTAC	5 cut(s)	44, 90, 295, 603, 904
AfiI	CCNNNNNNNGG	2 cut(s)	210, 317
AflII	CTTAAG	1 cut(s)	739
AflIII	ACRYGT	2 cut(s)	225, 836
AgsI	TTSAA	2 cut(s)	267, 936
AjnI	CCWGG	1 cut(s)	952
AleI	CACNNNNGTG	1 cut(s)	763
AluBI	AGCT	2 cut(s)	314, 562
AluI	AGCT	2 cut(s)	314, 562
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	3 cut(s)	431, 871, 982
AlwNI	CAGNNNCTG	1 cut(s)	953
AoxI	GGCC	1 cut(s)	913
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	2 cut(s)	484, 785
AseI	ATTAAT	1 cut(s)	725
Asp700I	GAANNNNTTC	1 cut(s)	325
Asp718I	GGTACC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	950
AsuHPI	GGTGA	1 cut(s)	561
AsuII	TTCGAA	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	950
BanI	GGYRCC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	203
BcgI	CGANNNNNNTGC	2 cut(s)	709, 743
BciT130I	CCWGG	1 cut(s)	954
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	3 cut(s)	27, 116, 351
BfmI	CTRYAG	1 cut(s)	761
BfrI	CTTAAG	1 cut(s)	739
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	2 cut(s)	218, 624
BlsI	GCNGC	2 cut(s)	219, 625
BmcAI	AGTACT	2 cut(s)	603, 904
Bme1390I	CCNGG	1 cut(s)	954
Bme18I	GGWCC	1 cut(s)	950
BmgT120I	GGNCC	1 cut(s)	950
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	954
BmsI	GCATC	2 cut(s)	229, 679
BpmI	CTGGAG	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	482
BsaAI	YACGTR	1 cut(s)	839
BsaJI	CCNNGG	2 cut(s)	441, 895
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 317
Bse1I	ACTGG	1 cut(s)	251
Bse3DI	GCAATG	4 cut(s)	108, 189, 477, 797
BseBI	CCWGG	1 cut(s)	954
BseDI	CCNNGG	2 cut(s)	441, 895
BseGI	GGATG	2 cut(s)	52, 670
BseLI	CCNNNNNNNGG	2 cut(s)	210, 317
BseMI	GCAATG	4 cut(s)	108, 189, 477, 797
BseMII	CTCAG	6 cut(s)	110, 219, 312, 348, 444, 495
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	3 cut(s)	626, 629, 858
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	1 cut(s)	915
BshNI	GGYRCC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	2 cut(s)	671, 935
BslI	CCNNNNNNNGG	2 cut(s)	210, 317
BsmAI	GTCTC	1 cut(s)	555
BsmBI	CGTCTC	1 cut(s)	555
BsmFI	GGGAC	2 cut(s)	671, 935
BsnI	GGCC	1 cut(s)	915
Bsp119I	TTCGAA	1 cut(s)	482
Bsp143I	GATC	4 cut(s)	323, 436, 863, 974
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	2 cut(s)	318, 623
BspANI	GGCC	1 cut(s)	915
BspCNI	CTCAG	6 cut(s)	109, 218, 311, 349, 445, 496
BspLI	GGNNCC	1 cut(s)	44
BspMAI	CTGCAG	1 cut(s)	765
BspPI	GGATC	3 cut(s)	431, 871, 982
BspT104I	TTCGAA	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	42
BspTI	CTTAAG	1 cut(s)	739
BsrBI	CCGCTC	1 cut(s)	623
BsrDI	GCAATG	4 cut(s)	108, 189, 477, 797
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	441, 895
BssMI	GATC	4 cut(s)	323, 436, 863, 974
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	954
Bst4CI	ACNGT	3 cut(s)	67, 479, 606
BstAFI	CTTAAG	1 cut(s)	739
BstBAI	YACGTR	1 cut(s)	839
BstBI	TTCGAA	1 cut(s)	482
BstC8I	GCNNGC	2 cut(s)	316, 621
BstDEI	CTNAG	6 cut(s)	96, 205, 298, 357, 453, 504
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	2 cut(s)	52, 670
BstKTI	GATC	4 cut(s)	326, 439, 866, 977
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	4 cut(s)	323, 436, 863, 974
BstMWI	GCNNNNNNNGC	1 cut(s)	755
BstNI	CCWGG	1 cut(s)	954
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	952
BstSFI	CTRYAG	1 cut(s)	761
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	3 cut(s)	323, 436, 863
BstYI	RGATCY	3 cut(s)	323, 436, 863
BsuRI	GGCC	1 cut(s)	915
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	52, 670
BtsI	GCAGTG	2 cut(s)	758, 770
BtsIMutI	CAGTG	4 cut(s)	160, 758, 770, 804
Cac8I	GCNNGC	2 cut(s)	316, 621
CaiI	CAGNNNCTG	1 cut(s)	953
Cfr13I	GGNCC	1 cut(s)	950
Csp6I	GTAC	5 cut(s)	43, 89, 294, 602, 903
CviAII	CATG	4 cut(s)	80, 226, 442, 715
CviJI	RGCY	5 cut(s)	136, 314, 416, 562, 915
CviKI_1	RGCY	5 cut(s)	136, 314, 416, 562, 915
CviQI	GTAC	5 cut(s)	43, 89, 294, 602, 903
DdeI	CTNAG	6 cut(s)	96, 205, 298, 357, 453, 504
DpnI	GATC	4 cut(s)	325, 438, 865, 976
DpnII	GATC	4 cut(s)	323, 436, 863, 974
EciI	GGCGGA	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	950
Eco57I	CTGAAG	2 cut(s)	312, 396
EcoO109I	RGGNCCY	1 cut(s)	950
EcoRII	CCWGG	1 cut(s)	952
EcoT14I	CCWWGG	1 cut(s)	441
EcoT22I	ATGCAT	1 cut(s)	672
ErhI	CCWWGG	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	555
FaeI	CATG	4 cut(s)	83, 229, 445, 718
FalI	AAGNNNNNCTT	4 cut(s)	513, 545, 892, 924
FaqI	GGGAC	2 cut(s)	671, 935
FatI	CATG	4 cut(s)	79, 225, 441, 714
Fnu4HI	GCNGC	2 cut(s)	218, 624
FokI	GGATG	2 cut(s)	39, 657
Fsp4HI	GCNGC	2 cut(s)	218, 624
FspBI	CTAG	3 cut(s)	27, 116, 351
GluI	GCNGC	2 cut(s)	218, 624
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	915
HapII	CCGG	1 cut(s)	387
Hin1II	CATG	4 cut(s)	83, 229, 445, 718
HincII	GTYRAC	2 cut(s)	280, 430
HindII	GTYRAC	2 cut(s)	280, 430
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	5 cut(s)	94, 119, 281, 566, 851
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	1 cut(s)	561
Hpy166II	GTNNAC	2 cut(s)	280, 430
Hpy188I	TCNGA	5 cut(s)	208, 301, 331, 454, 896
Hpy188III	TCNNGA	5 cut(s)	15, 116, 231, 371, 861
Hpy8I	GTNNAC	2 cut(s)	280, 430
HpyAV	CCTTC	2 cut(s)	84, 811
HpyCH4III	ACNGT	3 cut(s)	67, 479, 606
HpyCH4IV	ACGT	1 cut(s)	838
HpyCH4V	TGCA	9 cut(s)	308, 463, 475, 595, 646, 670, 720, 758, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	755
HpyF3I	CTNAG	6 cut(s)	96, 205, 298, 357, 453, 504
HpySE526I	ACGT	1 cut(s)	838
Hsp92II	CATG	4 cut(s)	83, 229, 445, 718
KpnI	GGTACC	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	323, 436, 863, 974
LmnI	GCTCC	1 cut(s)	616
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	2 cut(s)	229, 679
MaeI	CTAG	3 cut(s)	27, 116, 351
MaeII	ACGT	1 cut(s)	838
MaeIII	GTNAC	1 cut(s)	943
MalI	GATC	4 cut(s)	325, 438, 865, 976
MbiI	CCGCTC	1 cut(s)	623
MboI	GATC	4 cut(s)	323, 436, 863, 974
MboII	GAAGA	6 cut(s)	30, 62, 170, 318, 333, 702
MflI	RGATCY	3 cut(s)	323, 436, 863
MluCI	AATT	5 cut(s)	267, 484, 590, 722, 785
MlyI	GAGTC	3 cut(s)	88, 275, 860
MmeI	TCCRAC	1 cut(s)	154
Mph1103I	ATGCAT	1 cut(s)	672
MroXI	GAANNNNTTC	1 cut(s)	325
MseI	TTAA	5 cut(s)	290, 558, 725, 740, 773
MslI	CAYNNNNRTG	4 cut(s)	84, 446, 698, 763
MspA1I	CMGCKG	1 cut(s)	314
MspCI	CTTAAG	1 cut(s)	739
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	954
MvaI	CCWGG	1 cut(s)	954
MwoI	GCNNNNNNNGC	1 cut(s)	755
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	4 cut(s)	323, 436, 863, 974
NlaIII	CATG	4 cut(s)	83, 229, 445, 718
NlaIV	GGNNCC	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	672
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	482
OliI	CACNNNNGTG	1 cut(s)	763
PciI	ACATGT	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	119, 566
PflFI	GACNNNGTC	1 cut(s)	547
PkrI	GCNGC	2 cut(s)	219, 625
PleI	GAGTC	3 cut(s)	88, 275, 859
PpsI	GAGTC	3 cut(s)	88, 275, 859
Ppu21I	YACGTR	1 cut(s)	839
PpuMI	RGGWCCY	1 cut(s)	950
PscI	ACATGT	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	950
Psp6I	CCWGG	1 cut(s)	952
PspGI	CCWGG	1 cut(s)	952
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	950
PspPPI	RGGWCCY	1 cut(s)	950
PstI	CTGCAG	1 cut(s)	765
PstNI	CAGNNNCTG	1 cut(s)	953
PsuI	RGATCY	3 cut(s)	323, 436, 863
PsyI	GACNNNGTC	1 cut(s)	547
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	5 cut(s)	44, 90, 295, 603, 904
RsaNI	GTAC	5 cut(s)	43, 89, 294, 602, 903
RseI	CAYNNNNRTG	4 cut(s)	84, 446, 698, 763
SaqAI	TTAA	5 cut(s)	290, 558, 725, 740, 773
SatI	GCNGC	2 cut(s)	218, 624
Sau3AI	GATC	4 cut(s)	323, 436, 863, 974
Sau96I	GGNCC	1 cut(s)	950
ScaI	AGTACT	2 cut(s)	603, 904
SchI	GAGTC	3 cut(s)	88, 275, 860
ScrFI	CCNGG	1 cut(s)	954
SetI	ASST	9 cut(s)	174, 238, 299, 316, 548, 564, 574, 841, 952
SfaNI	GCATC	2 cut(s)	229, 679
SfcI	CTRYAG	1 cut(s)	761
SfuI	TTCGAA	1 cut(s)	482
SinI	GGWCC	1 cut(s)	950
SmiMI	CAYNNNNRTG	4 cut(s)	84, 446, 698, 763
SmlI	CTYRAG	1 cut(s)	739
SmoI	CTYRAG	1 cut(s)	739
Sse9I	AATT	5 cut(s)	267, 484, 590, 722, 785
SsiI	CCGC	2 cut(s)	318, 623
SspI	AATATT	2 cut(s)	424, 734
SspMI	CTAG	3 cut(s)	27, 116, 351
StyD4I	CCNGG	1 cut(s)	952
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	3 cut(s)	67, 479, 606
TaiI	ACGT	1 cut(s)	841
TaqI	TCGA	3 cut(s)	482, 729, 961
TasI	AATT	5 cut(s)	267, 484, 590, 722, 785
TatI	WGTACW	2 cut(s)	601, 902
TauI	GCSGC	1 cut(s)	626
TfiI	GAWTC	2 cut(s)	119, 566
Tru1I	TTAA	5 cut(s)	290, 558, 725, 740, 773
Tru9I	TTAA	5 cut(s)	290, 558, 725, 740, 773
TscAI	CASTG	4 cut(s)	160, 765, 770, 811
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	4 cut(s)	118, 673, 798, 825
TspGWI	ACGGA	2 cut(s)	106, 602
TspRI	CASTG	4 cut(s)	160, 765, 770, 811
Tth111I	GACNNNGTC	1 cut(s)	547
Vha464I	CTTAAG	1 cut(s)	739
VpaK11BI	GGWCC	1 cut(s)	950
VspI	ATTAAT	1 cut(s)	725
XapI	RAATTY	2 cut(s)	484, 785
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	3 cut(s)	27, 116, 351
ZrmI	AGTACT	2 cut(s)	603, 904
Zsp2I	ATGCAT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.