Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007344

Physical Location & Seq

Genomic Coordinates Reverse (-)

55378634 .. 55383001

Gene Structure 4368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG389500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGACAATATCATCTGGAAGAACAACTAGAGTGATTGGGTGGTACCATTCACATCCTCATATTACGGTTCTTCCTTCCCATGTTGATGTACGGACTCAGGCAATGTATCAACTTCTAGATTCTGGGTTCATCGGGCTGATATTTTCCTGTTTCAGTGAAGATATAAACAAGGTTGGACGAATACAAGTCATTGCCTTTCAGTCCTCAGATGGGAAGCAGCATCACATGTCAAGACCTATATCTTTATCTCCAGTAAATAAAAGTTCAATTATAGAAGTTGACTCGTCTTTAAGTACCTCAGAAAATGCACCAGTAAGATCTGGCTCGACTAGAGCAGAAGCTGCTGAACAAGACACAGCTGATTCAAGAACTTCTGAAACTATAAAGGCTGGCGGAAGATCTTCAGAACTTGGGCATTTCTTTGCTAGTGCTGAGGCAAATCATCAAGACAGAGAAAGAACCGGAGGGAACTACCCCACAGAAACTTCAGCCAACAATATTGTTGACATAGATCCCATGGATATGTCTGAGAGTATGCAAGAAGCAATGCACCGTTCGAATTTGGATATGAGTGGTGCTGAGTATGTAAGAAAAGAAGTTCCTCTTTATGTTTTACCGACCTCGTCTCTTATTAAGCTTGATTCACCTCTAATGTCATTTACGGAATTGCAACGAGTACTGTATGAGGAGGAGCGAGCGGCATATAACCAAGCAATCTTGCAAAATATGAGGGACGGGAAAATGCATCCACTTACTTTCATACATCACACATCAATGTATCAATCTTCCATGTGCAAATTAATCGAATATTGCTTAAGTCCTGCCATAAATGCACTGCAGTGTCGGTTAAGAGAGAATGAATTTCGGTTGGCATTGCTCACTGATGAAGTGAAGGGTTTGGAGAACGAAACACGTAGAGGAAGCGAGTCAAGTTCTGGATCTCCTCGTCAAGTTTTGTCGCCTACACTCCGAGGAAGTACTCCTTTAGGCCATAGGGACTTGTTCAGTTCAAGGAGTGTAACAGGTCCTGGTAGTCGAAGCAGAAAAGGATCGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006302 GO:0006325 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009314 GO:0009628 GO:0009893 GO:0009987 GO:0010212 GO:0010564 GO:0010604 GO:0010948 GO:0016043 GO:0016569 GO:0016570 GO:0016578 GO:0016579 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0019783 GO:0023052 GO:0031323 GO:0031325 GO:0031570 GO:0031572 GO:0031593 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0036211 GO:0036459 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045739 GO:0045786 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070011 GO:0070531 GO:0070536 GO:0070537 GO:0070552 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0101005 GO:0140030 GO:0140096 GO:1901360 GO:1901564 GO:1901987 GO:1901988 GO:1902749 GO:1902750 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko03440 ko04621 map03440 map04621

Pfam Domains

Protein Families

JAB

Protein Analysis

352

Amino Acids

38.99

Weight (kDa)

6.36

Isoelectric Point (pI)

69.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	6 - 38	1.3e-08	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
BRCC36_C	PF18110	217 - 298	5.9e-23	BRCC36 C-terminal helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80210 AT1G80210 AT3G06820 AT3G06820 AT3G06820
fragaria_vesca	FvH4_6g30340 FvH4_6g30340 FvH4_6g30340
malus_domestica	MD09G1221000.v1.1 MD17G1204400.v1.1
prunus_persica	Prupe.3G079900_v2.0.a1 Prupe.3G079900_v2.0.a1 Prupe.3G079900_v2.0.a1
pyrus_communis	pycom1094g00120 pycom17g20830
rosa_chinensis	RchiOBHm_Chr2g0136621
rosa_laevigata	RLG00000019542
rosa_multiflora	Rmu_sc0006440.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108160
rosa_rugosa	Rorug02G0332100
rosa_samantha	Rh2AG382900 Rh2BG389500 Rh2CG369200 Rh2DG406300
rosa_wichuraiana	Rw2G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	42
AccBSI	CCGCTC	1 cut(s)	698
AciI	CCGC	2 cut(s)	393, 698
AclWI	GGATC	3 cut(s)	506, 946, 1057
AcsI	RAATTY	2 cut(s)	559, 860
AcuI	CTGAAG	2 cut(s)	387, 471
AfaI	GTAC	5 cut(s)	44, 90, 295, 678, 979
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflII	CTTAAG	1 cut(s)	814
AflIII	ACRYGT	2 cut(s)	225, 911
AgsI	TTSAA	3 cut(s)	267, 366, 1011
AjnI	CCWGG	1 cut(s)	1027
AleI	CACNNNNGTG	1 cut(s)	838
AluBI	AGCT	3 cut(s)	341, 359, 637
AluI	AGCT	3 cut(s)	341, 359, 637
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	3 cut(s)	506, 946, 1057
AlwNI	CAGNNNCTG	2 cut(s)	341, 1028
AoxI	GGCC	1 cut(s)	988
ApeKI	GCWGC	2 cut(s)	217, 341
ApoI	RAATTY	2 cut(s)	559, 860
AseI	ATTAAT	1 cut(s)	800
Asp700I	GAANNNNTTC	1 cut(s)	400
Asp718I	GGTACC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	1025
AsuHPI	GGTGA	1 cut(s)	636
AsuII	TTCGAA	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	1025
BanI	GGYRCC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	229, 328
BccI	CCATC	1 cut(s)	203
BcgI	CGANNNNNNTGC	2 cut(s)	784, 818
BciT130I	CCWGG	1 cut(s)	1029
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	4 cut(s)	27, 116, 330, 426
BfmI	CTRYAG	1 cut(s)	836
BfrI	CTTAAG	1 cut(s)	814
BglII	AGATCT	2 cut(s)	317, 398
BisI	GCNGC	3 cut(s)	218, 342, 699
BlsI	GCNGC	3 cut(s)	219, 343, 700
BmcAI	AGTACT	2 cut(s)	678, 979
Bme1390I	CCNGG	1 cut(s)	1029
Bme18I	GGWCC	1 cut(s)	1025
BmgT120I	GGNCC	1 cut(s)	1025
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	1029
BmsI	GCATC	2 cut(s)	229, 754
BpmI	CTGGAG	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	557
BsaAI	YACGTR	1 cut(s)	914
BsaJI	CCNNGG	2 cut(s)	516, 970
BsaWI	WCCGGW	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	251, 311
Bse3DI	GCAATG	4 cut(s)	108, 189, 552, 872
BseBI	CCWGG	1 cut(s)	1029
BseDI	CCNNGG	2 cut(s)	516, 970
BseGI	GGATG	2 cut(s)	52, 745
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	4 cut(s)	108, 189, 552, 872
BseMII	CTCAG	6 cut(s)	110, 219, 312, 423, 519, 570
BseNI	ACTGG	2 cut(s)	251, 311
BseRI	GAGGAG	3 cut(s)	701, 704, 933
BseXI	GCAGC	2 cut(s)	229, 328
BshFI	GGCC	1 cut(s)	990
BshNI	GGYRCC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	462
BslFI	GGGAC	2 cut(s)	746, 1010
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	630
BsmBI	CGTCTC	1 cut(s)	630
BsmFI	GGGAC	2 cut(s)	746, 1010
BsnI	GGCC	1 cut(s)	990
Bsp119I	TTCGAA	1 cut(s)	557
Bsp143I	GATC	5 cut(s)	317, 398, 511, 938, 1049
Bsp19I	CCATGG	1 cut(s)	516
BspACI	CCGC	2 cut(s)	393, 698
BspANI	GGCC	1 cut(s)	990
BspCNI	CTCAG	6 cut(s)	109, 218, 311, 424, 520, 571
BspLI	GGNNCC	1 cut(s)	44
BspMAI	CTGCAG	1 cut(s)	840
BspPI	GGATC	3 cut(s)	506, 946, 1057
BspT104I	TTCGAA	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	42
BspTI	CTTAAG	1 cut(s)	814
BsrBI	CCGCTC	1 cut(s)	698
BsrDI	GCAATG	4 cut(s)	108, 189, 552, 872
BsrI	ACTGG	2 cut(s)	251, 311
BssECI	CCNNGG	2 cut(s)	516, 970
BssMI	GATC	5 cut(s)	317, 398, 511, 938, 1049
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	1029
Bst4CI	ACNGT	3 cut(s)	67, 554, 681
BstAFI	CTTAAG	1 cut(s)	814
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	914
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	391, 696
BstDEI	CTNAG	6 cut(s)	96, 205, 298, 432, 528, 579
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	52, 745
BstKTI	GATC	5 cut(s)	320, 401, 514, 941, 1052
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	5 cut(s)	317, 398, 511, 938, 1049
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 830
BstNI	CCWGG	1 cut(s)	1029
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	1027
BstSFI	CTRYAG	1 cut(s)	836
BstV1I	GCAGC	2 cut(s)	229, 328
BstX2I	RGATCY	4 cut(s)	317, 398, 511, 938
BstYI	RGATCY	4 cut(s)	317, 398, 511, 938
BsuRI	GGCC	1 cut(s)	990
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	52, 745
BtsI	GCAGTG	2 cut(s)	833, 845
BtsIMutI	CAGTG	4 cut(s)	160, 833, 845, 879
Cac8I	GCNNGC	2 cut(s)	391, 696
CaiI	CAGNNNCTG	2 cut(s)	341, 1028
Cfr13I	GGNCC	1 cut(s)	1025
Csp6I	GTAC	5 cut(s)	43, 89, 294, 677, 978
CviAII	CATG	4 cut(s)	80, 226, 517, 790
CviJI	RGCY	8 cut(s)	136, 324, 341, 359, 389, 491, 637, 990
CviKI_1	RGCY	8 cut(s)	136, 324, 341, 359, 389, 491, 637, 990
CviQI	GTAC	5 cut(s)	43, 89, 294, 677, 978
DdeI	CTNAG	6 cut(s)	96, 205, 298, 432, 528, 579
DpnI	GATC	5 cut(s)	319, 400, 513, 940, 1051
DpnII	GATC	5 cut(s)	317, 398, 511, 938, 1049
EciI	GGCGGA	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	1025
Eco57I	CTGAAG	2 cut(s)	387, 471
EcoO109I	RGGNCCY	1 cut(s)	1025
EcoRII	CCWGG	1 cut(s)	1027
EcoT14I	CCWWGG	1 cut(s)	516
EcoT22I	ATGCAT	1 cut(s)	747
ErhI	CCWWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	630
FaeI	CATG	4 cut(s)	83, 229, 520, 793
FalI	AAGNNNNNCTT	4 cut(s)	588, 620, 967, 999
FaqI	GGGAC	2 cut(s)	746, 1010
FatI	CATG	4 cut(s)	79, 225, 516, 789
Fnu4HI	GCNGC	3 cut(s)	218, 342, 699
FokI	GGATG	2 cut(s)	39, 732
Fsp4HI	GCNGC	3 cut(s)	218, 342, 699
FspBI	CTAG	4 cut(s)	27, 116, 330, 426
GluI	GCNGC	3 cut(s)	218, 342, 699
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	990
HapII	CCGG	1 cut(s)	462
Hin1II	CATG	4 cut(s)	83, 229, 520, 793
HincII	GTYRAC	2 cut(s)	280, 505
HindII	GTYRAC	2 cut(s)	280, 505
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	6 cut(s)	94, 119, 281, 362, 641, 926
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	1 cut(s)	636
Hpy166II	GTNNAC	2 cut(s)	280, 505
Hpy188I	TCNGA	6 cut(s)	208, 301, 376, 406, 529, 971
Hpy188III	TCNNGA	6 cut(s)	15, 116, 231, 366, 446, 936
Hpy8I	GTNNAC	2 cut(s)	280, 505
HpyAV	CCTTC	2 cut(s)	84, 886
HpyCH4III	ACNGT	3 cut(s)	67, 554, 681
HpyCH4IV	ACGT	1 cut(s)	913
HpyCH4V	TGCA	9 cut(s)	308, 538, 550, 670, 721, 745, 795, 833, 838
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 830
HpyF3I	CTNAG	6 cut(s)	96, 205, 298, 432, 528, 579
HpySE526I	ACGT	1 cut(s)	913
Hsp92II	CATG	4 cut(s)	83, 229, 520, 793
KpnI	GGTACC	1 cut(s)	46
Kzo9I	GATC	5 cut(s)	317, 398, 511, 938, 1049
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	2 cut(s)	229, 328
LweI	GCATC	2 cut(s)	229, 754
MaeI	CTAG	4 cut(s)	27, 116, 330, 426
MaeII	ACGT	1 cut(s)	913
MaeIII	GTNAC	1 cut(s)	1018
MalI	GATC	5 cut(s)	319, 400, 513, 940, 1051
MbiI	CCGCTC	1 cut(s)	698
MboI	GATC	5 cut(s)	317, 398, 511, 938, 1049
MboII	GAAGA	6 cut(s)	30, 62, 170, 393, 408, 777
MflI	RGATCY	4 cut(s)	317, 398, 511, 938
MluCI	AATT	5 cut(s)	267, 559, 665, 797, 860
MlyI	GAGTC	3 cut(s)	88, 275, 935
MmeI	TCCRAC	1 cut(s)	154
Mph1103I	ATGCAT	1 cut(s)	747
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	5 cut(s)	290, 633, 800, 815, 848
MslI	CAYNNNNRTG	4 cut(s)	84, 521, 773, 838
MspA1I	CMGCKG	1 cut(s)	359
MspCI	CTTAAG	1 cut(s)	814
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	1029
MvaI	CCWGG	1 cut(s)	1029
MwoI	GCNNNNNNNGC	2 cut(s)	341, 830
NcoI	CCATGG	1 cut(s)	516
NdeII	GATC	5 cut(s)	317, 398, 511, 938, 1049
NlaIII	CATG	4 cut(s)	83, 229, 520, 793
NlaIV	GGNNCC	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	747
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	557
OliI	CACNNNNGTG	1 cut(s)	838
PciI	ACATGT	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	119, 362, 641
PflFI	GACNNNGTC	1 cut(s)	622
PkrI	GCNGC	3 cut(s)	219, 343, 700
PleI	GAGTC	3 cut(s)	88, 275, 934
PpsI	GAGTC	3 cut(s)	88, 275, 934
Ppu21I	YACGTR	1 cut(s)	914
PpuMI	RGGWCCY	1 cut(s)	1025
PscI	ACATGT	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	800
Psp5II	RGGWCCY	1 cut(s)	1025
Psp6I	CCWGG	1 cut(s)	1027
PspGI	CCWGG	1 cut(s)	1027
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	1025
PspPPI	RGGWCCY	1 cut(s)	1025
PstI	CTGCAG	1 cut(s)	840
PstNI	CAGNNNCTG	2 cut(s)	341, 1028
PsuI	RGATCY	4 cut(s)	317, 398, 511, 938
PsyI	GACNNNGTC	1 cut(s)	622
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	5 cut(s)	44, 90, 295, 678, 979
RsaNI	GTAC	5 cut(s)	43, 89, 294, 677, 978
RseI	CAYNNNNRTG	4 cut(s)	84, 521, 773, 838
SaqAI	TTAA	5 cut(s)	290, 633, 800, 815, 848
SatI	GCNGC	3 cut(s)	218, 342, 699
Sau3AI	GATC	5 cut(s)	317, 398, 511, 938, 1049
Sau96I	GGNCC	1 cut(s)	1025
ScaI	AGTACT	2 cut(s)	678, 979
SchI	GAGTC	3 cut(s)	88, 275, 935
ScrFI	CCNGG	1 cut(s)	1029
SfaNI	GCATC	2 cut(s)	229, 754
SfcI	CTRYAG	1 cut(s)	836
SfuI	TTCGAA	1 cut(s)	557
SinI	GGWCC	1 cut(s)	1025
SmiMI	CAYNNNNRTG	4 cut(s)	84, 521, 773, 838
SmlI	CTYRAG	1 cut(s)	814
SmoI	CTYRAG	1 cut(s)	814
Sse9I	AATT	5 cut(s)	267, 559, 665, 797, 860
SsiI	CCGC	2 cut(s)	393, 698
SspI	AATATT	2 cut(s)	499, 809
SspMI	CTAG	4 cut(s)	27, 116, 330, 426
StyD4I	CCNGG	1 cut(s)	1027
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	3 cut(s)	67, 554, 681
TaiI	ACGT	1 cut(s)	916
TaqI	TCGA	4 cut(s)	326, 557, 804, 1036
TasI	AATT	5 cut(s)	267, 559, 665, 797, 860
TatI	WGTACW	2 cut(s)	676, 977
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	3 cut(s)	119, 362, 641
Tru1I	TTAA	5 cut(s)	290, 633, 800, 815, 848
Tru9I	TTAA	5 cut(s)	290, 633, 800, 815, 848
TscAI	CASTG	4 cut(s)	160, 840, 845, 886
TseI	GCWGC	2 cut(s)	217, 341
TspDTI	ATGAA	4 cut(s)	118, 748, 873, 900
TspGWI	ACGGA	2 cut(s)	106, 677
TspRI	CASTG	4 cut(s)	160, 840, 845, 886
Tth111I	GACNNNGTC	1 cut(s)	622
Vha464I	CTTAAG	1 cut(s)	814
VpaK11BI	GGWCC	1 cut(s)	1025
VspI	ATTAAT	1 cut(s)	800
XapI	RAATTY	2 cut(s)	559, 860
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	4 cut(s)	27, 116, 330, 426
ZrmI	AGTACT	2 cut(s)	678, 979
Zsp2I	ATGCAT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.