Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007344

Physical Location & Seq

Genomic Coordinates Reverse (-)

53956707 .. 53961848

Gene Structure 5142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50741

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGATATGCTGTAAGCACAGAATGACAATATCATCTGGAAGAACAACTAGAGTGATTGGGTGGTACCATTCACATCCTCATATTACGGTTCTTCCTTCCCATGTTGATGTACGGACTCAGGCAATGTATCAACTTCTAGATTCTGGGTTCATCGGGCTGATATTTTCCTGTTTCAGTGAAGATATAAACAAGGTTGGACGAATACAAGTCATTGCCTTTCAGTCCTCAGATGGGAAGCAGCATCACATGTCAAGACCTATATCTTTATCTCCAGTAAATAAAAGTTCAATTATAGAAGTTGACTCGTCTTTAAGTACCTCAGAAAATGCACCAGTAAGATCTGGCTCGACTAGAGCAGAAGCTGCTGAACAAGACACAGCTGATTCAAGAACTTCTGAAACTATAAAGGCTGGCGGAAGATCTTCAGAACTTGGGCATTTCTTTGCTAGTGCTGAGGCAAATCATCAAGACAGAGAAAGAACCGGAGGGAACTACCCCACAGAAACTTCAGCCAACAATATTGTTGACATAGATCCCATGGATATGTCTGAGAGTATGCAAGAAGCAATGCACCGTTCGAATTTGGATATGAGTGGTGCTGAGTATGTAAGAAAAGAAGTTCCTCTTTATGTTTTACCGACCTCGTCTCTTATTAAGCTTGATTCACCTCTAATGTCATTTACGGAATTGCAACGAGTACTGTATGAGGAGGAGCGAGCGGCATATAACCAAGCAATCTTGCAAAATATGAGGGACGGGAAAATGCATCCACTTACTTTCATACATCACACATCAATGTATCAATCTTCCATGTGCAAATTAATCGAATATTGCTTAAGTCCTGCCATAAATGCACTGCAGTGTCGGTTAAGAGAGAATGAATTTCGGTTGGCATTGCTCACTGATGAAGTGAAGGGTTTGGAGAACGAAACACGTAGAGGAAGCGAGTCAAGTTCTGGATCTCCTCGTCAAGTTTTGTCGCCTACACTCCGAGGAAGTACTCCTTTAGGCCATAGGGACTTGTTCAGTTCAAGGAGTGTAACAGGTCCTGGTAGTCGAAGCAGAAAAGGATCGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006302 GO:0006325 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009314 GO:0009628 GO:0009893 GO:0009987 GO:0010212 GO:0010564 GO:0010604 GO:0010948 GO:0016043 GO:0016569 GO:0016570 GO:0016578 GO:0016579 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0019783 GO:0023052 GO:0031323 GO:0031325 GO:0031570 GO:0031572 GO:0031593 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0036211 GO:0036459 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045739 GO:0045786 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070011 GO:0070531 GO:0070536 GO:0070537 GO:0070552 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0101005 GO:0140030 GO:0140096 GO:1901360 GO:1901564 GO:1901987 GO:1901988 GO:1902749 GO:1902750 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko03440 ko04621 map03440 map04621

Pfam Domains

Protein Families

JAB

Protein Analysis

359

Amino Acids

39.86

Weight (kDa)

6.71

Isoelectric Point (pI)

68.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	10 - 45	5.8e-09	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
BRCC36_C	PF18110	224 - 305	6.2e-23	BRCC36 C-terminal helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80210 AT1G80210 AT3G06820 AT3G06820 AT3G06820
fragaria_vesca	FvH4_6g30340 FvH4_6g30340 FvH4_6g30340
malus_domestica	MD09G1221000.v1.1 MD17G1204400.v1.1
prunus_persica	Prupe.3G079900_v2.0.a1 Prupe.3G079900_v2.0.a1 Prupe.3G079900_v2.0.a1
pyrus_communis	pycom1094g00120 pycom17g20830
rosa_chinensis	RchiOBHm_Chr2g0136621
rosa_laevigata	RLG00000019542
rosa_multiflora	Rmu_sc0006440.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108160
rosa_rugosa	Rorug02G0332100
rosa_samantha	Rh2AG382900 Rh2BG389500 Rh2CG369200 Rh2DG406300
rosa_wichuraiana	Rw2G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	63
AccBSI	CCGCTC	1 cut(s)	719
AciI	CCGC	2 cut(s)	414, 719
AclWI	GGATC	3 cut(s)	527, 967, 1078
AcsI	RAATTY	2 cut(s)	580, 881
AcuI	CTGAAG	2 cut(s)	408, 492
AfaI	GTAC	5 cut(s)	65, 111, 316, 699, 1000
AfiI	CCNNNNNNNGG	1 cut(s)	231
AflII	CTTAAG	1 cut(s)	835
AflIII	ACRYGT	2 cut(s)	246, 932
AgsI	TTSAA	3 cut(s)	288, 387, 1032
AjnI	CCWGG	1 cut(s)	1048
AleI	CACNNNNGTG	1 cut(s)	859
AluBI	AGCT	3 cut(s)	362, 380, 658
AluI	AGCT	3 cut(s)	362, 380, 658
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	3 cut(s)	527, 967, 1078
AlwNI	CAGNNNCTG	2 cut(s)	362, 1049
AoxI	GGCC	1 cut(s)	1009
ApeKI	GCWGC	2 cut(s)	238, 362
ApoI	RAATTY	2 cut(s)	580, 881
AseI	ATTAAT	1 cut(s)	821
Asp700I	GAANNNNTTC	1 cut(s)	421
Asp718I	GGTACC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	1046
AsuHPI	GGTGA	1 cut(s)	657
AsuII	TTCGAA	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	1046
BanI	GGYRCC	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	250, 349
BccI	CCATC	1 cut(s)	224
BcgI	CGANNNNNNTGC	2 cut(s)	805, 839
BciT130I	CCWGG	1 cut(s)	1050
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	4 cut(s)	48, 137, 351, 447
BfmI	CTRYAG	1 cut(s)	857
BfrI	CTTAAG	1 cut(s)	835
BglII	AGATCT	2 cut(s)	338, 419
BisI	GCNGC	3 cut(s)	239, 363, 720
BlsI	GCNGC	3 cut(s)	240, 364, 721
BmcAI	AGTACT	2 cut(s)	699, 1000
Bme1390I	CCNGG	1 cut(s)	1050
Bme18I	GGWCC	1 cut(s)	1046
BmgT120I	GGNCC	1 cut(s)	1046
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	1050
BmsI	GCATC	2 cut(s)	250, 775
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	935
BsaJI	CCNNGG	2 cut(s)	537, 991
BsaWI	WCCGGW	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	2 cut(s)	272, 332
Bse3DI	GCAATG	4 cut(s)	129, 210, 573, 893
BseBI	CCWGG	1 cut(s)	1050
BseDI	CCNNGG	2 cut(s)	537, 991
BseGI	GGATG	2 cut(s)	73, 766
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	4 cut(s)	129, 210, 573, 893
BseMII	CTCAG	6 cut(s)	131, 240, 333, 444, 540, 591
BseNI	ACTGG	2 cut(s)	272, 332
BseRI	GAGGAG	3 cut(s)	722, 725, 954
BseXI	GCAGC	2 cut(s)	250, 349
BshFI	GGCC	1 cut(s)	1011
BshNI	GGYRCC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	2 cut(s)	767, 1031
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	651
BsmBI	CGTCTC	1 cut(s)	651
BsmFI	GGGAC	2 cut(s)	767, 1031
BsnI	GGCC	1 cut(s)	1011
Bsp119I	TTCGAA	1 cut(s)	578
Bsp143I	GATC	5 cut(s)	338, 419, 532, 959, 1070
Bsp19I	CCATGG	1 cut(s)	537
BspACI	CCGC	2 cut(s)	414, 719
BspANI	GGCC	1 cut(s)	1011
BspCNI	CTCAG	6 cut(s)	130, 239, 332, 445, 541, 592
BspLI	GGNNCC	1 cut(s)	65
BspMAI	CTGCAG	1 cut(s)	861
BspPI	GGATC	3 cut(s)	527, 967, 1078
BspT104I	TTCGAA	1 cut(s)	578
BspT107I	GGYRCC	1 cut(s)	63
BspTI	CTTAAG	1 cut(s)	835
BsrBI	CCGCTC	1 cut(s)	719
BsrDI	GCAATG	4 cut(s)	129, 210, 573, 893
BsrI	ACTGG	2 cut(s)	272, 332
BssECI	CCNNGG	2 cut(s)	537, 991
BssMI	GATC	5 cut(s)	338, 419, 532, 959, 1070
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	1050
Bst4CI	ACNGT	3 cut(s)	88, 575, 702
BstAFI	CTTAAG	1 cut(s)	835
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	935
BstBI	TTCGAA	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	412, 717
BstDEI	CTNAG	6 cut(s)	117, 226, 319, 453, 549, 600
BstDSI	CCRYGG	1 cut(s)	537
BstF5I	GGATG	2 cut(s)	73, 766
BstKTI	GATC	5 cut(s)	341, 422, 535, 962, 1073
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	5 cut(s)	338, 419, 532, 959, 1070
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 851
BstNI	CCWGG	1 cut(s)	1050
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	1048
BstSFI	CTRYAG	1 cut(s)	857
BstV1I	GCAGC	2 cut(s)	250, 349
BstX2I	RGATCY	4 cut(s)	338, 419, 532, 959
BstYI	RGATCY	4 cut(s)	338, 419, 532, 959
BsuRI	GGCC	1 cut(s)	1011
BtgI	CCRYGG	1 cut(s)	537
BtsCI	GGATG	2 cut(s)	73, 766
BtsI	GCAGTG	2 cut(s)	854, 866
BtsIMutI	CAGTG	4 cut(s)	181, 854, 866, 900
Cac8I	GCNNGC	2 cut(s)	412, 717
CaiI	CAGNNNCTG	2 cut(s)	362, 1049
Cfr13I	GGNCC	1 cut(s)	1046
Csp6I	GTAC	5 cut(s)	64, 110, 315, 698, 999
CviAII	CATG	4 cut(s)	101, 247, 538, 811
CviJI	RGCY	8 cut(s)	157, 345, 362, 380, 410, 512, 658, 1011
CviKI_1	RGCY	8 cut(s)	157, 345, 362, 380, 410, 512, 658, 1011
CviQI	GTAC	5 cut(s)	64, 110, 315, 698, 999
DdeI	CTNAG	6 cut(s)	117, 226, 319, 453, 549, 600
DpnI	GATC	5 cut(s)	340, 421, 534, 961, 1072
DpnII	GATC	5 cut(s)	338, 419, 532, 959, 1070
EciI	GGCGGA	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	1046
Eco57I	CTGAAG	2 cut(s)	408, 492
EcoO109I	RGGNCCY	1 cut(s)	1046
EcoRII	CCWGG	1 cut(s)	1048
EcoT14I	CCWWGG	1 cut(s)	537
EcoT22I	ATGCAT	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	651
FaeI	CATG	4 cut(s)	104, 250, 541, 814
FalI	AAGNNNNNCTT	4 cut(s)	609, 641, 988, 1020
FaqI	GGGAC	2 cut(s)	767, 1031
FatI	CATG	4 cut(s)	100, 246, 537, 810
Fnu4HI	GCNGC	3 cut(s)	239, 363, 720
FokI	GGATG	2 cut(s)	60, 753
Fsp4HI	GCNGC	3 cut(s)	239, 363, 720
FspBI	CTAG	4 cut(s)	48, 137, 351, 447
GluI	GCNGC	3 cut(s)	239, 363, 720
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	1011
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	4 cut(s)	104, 250, 541, 814
HincII	GTYRAC	2 cut(s)	301, 526
HindII	GTYRAC	2 cut(s)	301, 526
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	6 cut(s)	115, 140, 302, 383, 662, 947
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	1 cut(s)	657
Hpy166II	GTNNAC	2 cut(s)	301, 526
Hpy188I	TCNGA	6 cut(s)	229, 322, 397, 427, 550, 992
Hpy188III	TCNNGA	6 cut(s)	36, 137, 252, 387, 467, 957
Hpy8I	GTNNAC	2 cut(s)	301, 526
HpyAV	CCTTC	2 cut(s)	105, 907
HpyCH4III	ACNGT	3 cut(s)	88, 575, 702
HpyCH4IV	ACGT	1 cut(s)	934
HpyCH4V	TGCA	9 cut(s)	329, 559, 571, 691, 742, 766, 816, 854, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 851
HpyF3I	CTNAG	6 cut(s)	117, 226, 319, 453, 549, 600
HpySE526I	ACGT	1 cut(s)	934
Hsp92II	CATG	4 cut(s)	104, 250, 541, 814
KpnI	GGTACC	1 cut(s)	67
Kzo9I	GATC	5 cut(s)	338, 419, 532, 959, 1070
LmnI	GCTCC	1 cut(s)	712
Lsp1109I	GCAGC	2 cut(s)	250, 349
LweI	GCATC	2 cut(s)	250, 775
MaeI	CTAG	4 cut(s)	48, 137, 351, 447
MaeII	ACGT	1 cut(s)	934
MaeIII	GTNAC	1 cut(s)	1039
MalI	GATC	5 cut(s)	340, 421, 534, 961, 1072
MbiI	CCGCTC	1 cut(s)	719
MboI	GATC	5 cut(s)	338, 419, 532, 959, 1070
MboII	GAAGA	6 cut(s)	51, 83, 191, 414, 429, 798
MflI	RGATCY	4 cut(s)	338, 419, 532, 959
MluCI	AATT	5 cut(s)	288, 580, 686, 818, 881
MlyI	GAGTC	3 cut(s)	109, 296, 956
MmeI	TCCRAC	1 cut(s)	175
Mph1103I	ATGCAT	1 cut(s)	768
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	5 cut(s)	311, 654, 821, 836, 869
MslI	CAYNNNNRTG	4 cut(s)	105, 542, 794, 859
MspA1I	CMGCKG	1 cut(s)	380
MspCI	CTTAAG	1 cut(s)	835
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	1 cut(s)	1050
MvaI	CCWGG	1 cut(s)	1050
MwoI	GCNNNNNNNGC	2 cut(s)	362, 851
NcoI	CCATGG	1 cut(s)	537
NdeII	GATC	5 cut(s)	338, 419, 532, 959, 1070
NlaIII	CATG	4 cut(s)	104, 250, 541, 814
NlaIV	GGNNCC	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	768
NspI	RCATGY	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	578
OliI	CACNNNNGTG	1 cut(s)	859
PciI	ACATGT	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	3 cut(s)	140, 383, 662
PflFI	GACNNNGTC	1 cut(s)	643
PkrI	GCNGC	3 cut(s)	240, 364, 721
PleI	GAGTC	3 cut(s)	109, 296, 955
PpsI	GAGTC	3 cut(s)	109, 296, 955
Ppu21I	YACGTR	1 cut(s)	935
PpuMI	RGGWCCY	1 cut(s)	1046
PscI	ACATGT	1 cut(s)	246
PshBI	ATTAAT	1 cut(s)	821
Psp5II	RGGWCCY	1 cut(s)	1046
Psp6I	CCWGG	1 cut(s)	1048
PspGI	CCWGG	1 cut(s)	1048
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	1046
PspPPI	RGGWCCY	1 cut(s)	1046
PstI	CTGCAG	1 cut(s)	861
PstNI	CAGNNNCTG	2 cut(s)	362, 1049
PsuI	RGATCY	4 cut(s)	338, 419, 532, 959
PsyI	GACNNNGTC	1 cut(s)	643
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	5 cut(s)	65, 111, 316, 699, 1000
RsaNI	GTAC	5 cut(s)	64, 110, 315, 698, 999
RseI	CAYNNNNRTG	4 cut(s)	105, 542, 794, 859
SaqAI	TTAA	5 cut(s)	311, 654, 821, 836, 869
SatI	GCNGC	3 cut(s)	239, 363, 720
Sau3AI	GATC	5 cut(s)	338, 419, 532, 959, 1070
Sau96I	GGNCC	1 cut(s)	1046
ScaI	AGTACT	2 cut(s)	699, 1000
SchI	GAGTC	3 cut(s)	109, 296, 956
ScrFI	CCNGG	1 cut(s)	1050
SfaNI	GCATC	2 cut(s)	250, 775
SfcI	CTRYAG	1 cut(s)	857
SfuI	TTCGAA	1 cut(s)	578
SinI	GGWCC	1 cut(s)	1046
SmiMI	CAYNNNNRTG	4 cut(s)	105, 542, 794, 859
SmlI	CTYRAG	1 cut(s)	835
SmoI	CTYRAG	1 cut(s)	835
Sse9I	AATT	5 cut(s)	288, 580, 686, 818, 881
SsiI	CCGC	2 cut(s)	414, 719
SspI	AATATT	2 cut(s)	520, 830
SspMI	CTAG	4 cut(s)	48, 137, 351, 447
StyD4I	CCNGG	1 cut(s)	1048
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	3 cut(s)	88, 575, 702
TaiI	ACGT	1 cut(s)	937
TaqI	TCGA	4 cut(s)	347, 578, 825, 1057
TasI	AATT	5 cut(s)	288, 580, 686, 818, 881
TatI	WGTACW	2 cut(s)	697, 998
TauI	GCSGC	1 cut(s)	722
TfiI	GAWTC	3 cut(s)	140, 383, 662
Tru1I	TTAA	5 cut(s)	311, 654, 821, 836, 869
Tru9I	TTAA	5 cut(s)	311, 654, 821, 836, 869
TscAI	CASTG	4 cut(s)	181, 861, 866, 907
TseI	GCWGC	2 cut(s)	238, 362
TspDTI	ATGAA	4 cut(s)	139, 769, 894, 921
TspGWI	ACGGA	2 cut(s)	127, 698
TspRI	CASTG	4 cut(s)	181, 861, 866, 907
Tth111I	GACNNNGTC	1 cut(s)	643
Vha464I	CTTAAG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	1046
VspI	ATTAAT	1 cut(s)	821
XapI	RAATTY	2 cut(s)	580, 881
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	4 cut(s)	48, 137, 351, 447
ZrmI	AGTACT	2 cut(s)	699, 1000
Zsp2I	ATGCAT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.