AT3G06820

Prokaryotic homologs of the JAB domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007344
Physical Location & Seq
Reverse (-)
2150823 .. 2156073
5251 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06820.3

Sequence Viewer

Length: 975 bp
ATGACGATATCAACGGGCAGAACTACACGGGTCATTGGATGGTACCACTCCCATCCTCATATTACCGTTCTTCCTTCCCATGTCGATGTTCGGACACAAGCTATGTATCAGCTTTTAGATTCTGGTTTTATTGGCCTCATATTTTCCTGTTTTAGTGAAGATGCTAACAAGGTTGGTAGAATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAAGCCGAATAGTATTCCTAAATCAATGAGCCTGGTTCTTGCTAATAAAGATTCTGTCATCGATATAGAATCTTCATCTAGTTCTTCGGACTCGATATACCAGCGATCCTCTTCTTCTAAGCCCGAGCTAGACACAATTGATACTGCTACAACTTCCGGATCTAAGGGTGGAGGACGGGTTTCAGATTTTGGGCCTTTCTTTACAAACAATATTGAGGCCAATATCACCGGCAGAGATGAAACTCACAAATCAGGCAATCTCAGCAGCACAACTATAGGAATTGACTCGATGGACATGTCTGAAAGTATGCAAGAGGCAATGCTCCGTTCAAATTTAGATACCAGTGGTGCGGGGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCAACTTCATCCCTTCTTCCAGTCAATTCACCTTTAGCATCTTTTAAAAGCCTGCAACGAGTACTGTACGAGGAGGAACGAGCAGCGTACTACCAATCAGTGCAGCAAAACATGAGAGATGGGCGAGTTCATCCTCTTGCTTTCATTCACAACACATCAACATATCAAGCCTCCATGTGCAAGTTGATCGAATACTGCTTGAGTCCTGCCATTAACGCACTTCAAGATAGGCAGAAGGAGAACAAGATCCGGTTAGCAATGCTGATGGATGAAGCTGAGGTTTTGGAGGCACAAAAACTTAAAGGAGCAGAGACAAGCCGGAGACCATCTCATCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAGGATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006302 GO:0006325 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009314 GO:0009628 GO:0009893 GO:0009987 GO:0010212 GO:0010564 GO:0010604 GO:0010948 GO:0016043 GO:0016569 GO:0016570 GO:0016578 GO:0016579 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0019783 GO:0023052 GO:0031323 GO:0031325 GO:0031570 GO:0031572 GO:0031593 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0036211 GO:0036459 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045739 GO:0045786 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070011 GO:0070531 GO:0070536 GO:0070537 GO:0070552 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0101005 GO:0140030 GO:0140096 GO:1901360 GO:1901564 GO:1901987 GO:1901988 GO:1902749 GO:1902750 GO:2001020 GO:2001022
KEGG Pathways
Metabolic & Signaling
ko03440 ko04621 map03440 map04621
Pfam Domains
Protein Families
JAB

Protein Analysis

324

Amino Acids

35.56

Weight (kDa)

7.16

Isoelectric Point (pI)

59.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 3 - 119 2.1e-17 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB PF14464 10 - 114 1.7e-07 Prokaryotic homologs of the JAB domain
BRCC36_C PF18110 293 - 376 7.3e-23 BRCC36 C-terminal helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 42
AccIII TCCGGA 1 cut(s) 368
AciI CCGC 1 cut(s) 563
AclWI GGATC 3 cut(s) 312, 379, 841
AcsI RAATTY 1 cut(s) 544
AfaI GTAC 4 cut(s) 44, 663, 668, 689
AflIII ACRYGT 1 cut(s) 507
AgsI TTSAA 2 cut(s) 543, 824
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 4 cut(s) 101, 112, 340, 875
AluI AGCT 4 cut(s) 101, 112, 340, 875
Alw26I GTCTC 2 cut(s) 905, 916
AlwI GGATC 3 cut(s) 312, 379, 841
Ama87I CYCGRG 1 cut(s) 335
Aor13HI TCCGGA 1 cut(s) 368
AoxI GGCC 3 cut(s) 133, 404, 429
ApeKI GCWGC 4 cut(s) 477, 683, 703, 951
ApoI RAATTY 1 cut(s) 544
Asp718I GGTACC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 430, 621
AvaI CYCGRG 1 cut(s) 335
BanI GGYRCC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 195
BbvCI CCTCAGC 1 cut(s) 876
BbvI GCAGC 4 cut(s) 489, 695, 715, 963
BccI CCATC 7 cut(s) 33, 60, 203, 496, 713, 859, 934
BcgI CGANNNNNNTGC 2 cut(s) 769, 803
BciT130I CCWGG 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 905, 916
BfaI CTAG 2 cut(s) 291, 341
BfmI CTRYAG 1 cut(s) 486
BisI GCNGC 4 cut(s) 478, 684, 704, 952
BlsI GCNGC 4 cut(s) 479, 685, 705, 953
BmcAI AGTACT 1 cut(s) 663
Bme1390I CCNGG 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 2 cut(s) 151, 647
BpiI GAAGAC 1 cut(s) 195
BplI GAGNNNNNCTC 2 cut(s) 913, 945
Bpu10I CCTNAGC 1 cut(s) 876
BpuEI CTTGAG 1 cut(s) 820
Bsa29I ATCGAT 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 916
BsaWI WCCGGW 2 cut(s) 368, 849
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 3 cut(s) 199, 555, 620
Bse3DI GCAATG 2 cut(s) 537, 864
BseAI TCCGGA 1 cut(s) 368
BseBI CCWGG 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 273
BseGI GGATG 5 cut(s) 44, 52, 608, 730, 874
BseMI GCAATG 2 cut(s) 537, 864
BseMII CTCAG 2 cut(s) 487, 867
BseNI ACTGG 3 cut(s) 199, 555, 620
BseRI GAGGAG 1 cut(s) 686
BseXI GCAGC 4 cut(s) 489, 695, 715, 963
BsgI GTGCAG 1 cut(s) 722
BshFI GGCC 3 cut(s) 135, 406, 431
BshNI GGYRCC 1 cut(s) 42
BshVI ATCGAT 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 4 cut(s) 369, 441, 850, 919
BslFI GGGAC 1 cut(s) 569
BsmAI GTCTC 2 cut(s) 905, 916
BsmFI GGGAC 1 cut(s) 569
BsnI GGCC 3 cut(s) 135, 406, 431
Bso31I GGTCTC 1 cut(s) 916
BsoBI CYCGRG 1 cut(s) 335
Bsp13I TCCGGA 1 cut(s) 368
Bsp143I GATC 5 cut(s) 317, 371, 786, 846, 968
BspACI CCGC 1 cut(s) 563
BspANI GGCC 3 cut(s) 135, 406, 431
BspCNI CTCAG 2 cut(s) 486, 868
BspDI ATCGAT 1 cut(s) 273
BspEI TCCGGA 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 44
BspPI GGATC 3 cut(s) 312, 379, 841
BspT107I GGYRCC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 916
BsrDI GCAATG 2 cut(s) 537, 864
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 3 cut(s) 199, 555, 620
BssAI RCCGGY 1 cut(s) 440
BssMI GATC 5 cut(s) 317, 371, 786, 846, 968
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 3 cut(s) 67, 666, 944
Bst6I CTCTTC 2 cut(s) 328, 958
BstC8I GCNNGC 1 cut(s) 653
BstDEI CTNAG 4 cut(s) 330, 375, 473, 876
BstF5I GGATG 5 cut(s) 44, 52, 608, 730, 874
BstKTI GATC 5 cut(s) 320, 374, 789, 849, 971
BstMAI GTCTC 2 cut(s) 905, 916
BstMBI GATC 5 cut(s) 317, 371, 786, 846, 968
BstMWI GCNNNNNNNGC 3 cut(s) 474, 815, 957
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 4 cut(s) 489, 695, 715, 963
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 2 cut(s) 371, 846
BstYI RGATCY 2 cut(s) 371, 846
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 3 cut(s) 135, 406, 431
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 5 cut(s) 44, 52, 608, 730, 874
BtsIMutI CAGTG 2 cut(s) 562, 705
Cac8I GCNNGC 1 cut(s) 653
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 404
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 4 cut(s) 43, 662, 667, 688
CviAII CATG 5 cut(s) 80, 508, 593, 712, 775
CviQI GTAC 4 cut(s) 43, 662, 667, 688
DdeI CTNAG 4 cut(s) 330, 375, 473, 876
DpnI GATC 5 cut(s) 319, 373, 788, 848, 970
DpnII GATC 5 cut(s) 317, 371, 786, 846, 968
DraI TTTAAA 1 cut(s) 646
Eam1104I CTCTTC 2 cut(s) 328, 958
EarI CTCTTC 2 cut(s) 328, 958
Eco31I GGTCTC 1 cut(s) 916
Eco32I GATATC 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 243
EcoRV GATATC 1 cut(s) 9
FaeI CATG 5 cut(s) 83, 511, 596, 715, 778
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 1 cut(s) 569
FatI CATG 5 cut(s) 79, 507, 592, 711, 774
FauI CCCGC 1 cut(s) 556
Fnu4HI GCNGC 4 cut(s) 478, 684, 704, 952
FokI GGATG 5 cut(s) 39, 51, 595, 717, 881
Fsp4HI GCNGC 4 cut(s) 478, 684, 704, 952
FspBI CTAG 2 cut(s) 291, 341
GluI GCNGC 4 cut(s) 478, 684, 704, 952
HaeIII GGCC 3 cut(s) 135, 406, 431
HapII CCGG 4 cut(s) 369, 441, 850, 919
Hin1II CATG 5 cut(s) 83, 511, 596, 715, 778
HinfI GANTC 7 cut(s) 119, 180, 263, 281, 302, 497, 802
HpaII CCGG 4 cut(s) 369, 441, 850, 919
HphI GGTGA 2 cut(s) 430, 621
Hpy166II GTNNAC 1 cut(s) 940
Hpy188I TCNGA 5 cut(s) 93, 208, 301, 397, 514
Hpy188III TCNNGA 2 cut(s) 369, 824
Hpy8I GTNNAC 1 cut(s) 940
HpyAV CCTTC 3 cut(s) 84, 623, 829
HpyCH4III ACNGT 3 cut(s) 67, 666, 944
HpyCH4V TGCA 4 cut(s) 523, 655, 703, 780
HpyF10VI GCNNNNNNNGC 3 cut(s) 474, 815, 957
HpyF3I CTNAG 4 cut(s) 330, 375, 473, 876
Hsp92II CATG 5 cut(s) 83, 511, 596, 715, 778
Kpn2I TCCGGA 1 cut(s) 368
KpnI GGTACC 1 cut(s) 46
Kzo9I GATC 5 cut(s) 317, 371, 786, 846, 968
LmnI GCTCC 2 cut(s) 540, 905
Lsp1109I GCAGC 4 cut(s) 489, 695, 715, 963
LweI GCATC 2 cut(s) 151, 647
MaeI CTAG 2 cut(s) 291, 341
MalI GATC 5 cut(s) 319, 373, 788, 848, 970
MboI GATC 5 cut(s) 317, 371, 786, 846, 968
MboII GAAGA 9 cut(s) 62, 170, 195, 276, 288, 315, 318, 608, 975
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 2 cut(s) 371, 846
MluCI AATT 4 cut(s) 348, 492, 544, 625
MlyI GAGTC 3 cut(s) 296, 491, 811
MroI TCCGGA 1 cut(s) 368
MseI TTAA 3 cut(s) 645, 813, 900
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 4 cut(s) 369, 441, 850, 919
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 474, 815, 957
NdeII GATC 5 cut(s) 317, 371, 786, 846, 968
NlaIII CATG 5 cut(s) 83, 511, 596, 715, 778
NlaIV GGNNCC 1 cut(s) 44
NspI RCATGY 1 cut(s) 511
PciI ACATGT 1 cut(s) 507
PfeI GAWTC 4 cut(s) 119, 180, 263, 281
PkrI GCNGC 4 cut(s) 479, 685, 705, 953
PleI GAGTC 3 cut(s) 296, 491, 810
PpsI GAGTC 3 cut(s) 296, 491, 810
PscI ACATGT 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 404
PsuI RGATCY 2 cut(s) 371, 846
RsaI GTAC 4 cut(s) 44, 663, 668, 689
RsaNI GTAC 4 cut(s) 43, 662, 667, 688
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 3 cut(s) 645, 813, 900
SatI GCNGC 4 cut(s) 478, 684, 704, 952
Sau3AI GATC 5 cut(s) 317, 371, 786, 846, 968
Sau96I GGNCC 1 cut(s) 404
ScaI AGTACT 1 cut(s) 663
SchI GAGTC 3 cut(s) 296, 491, 811
ScrFI CCNGG 1 cut(s) 245
SetI ASST 7 cut(s) 103, 114, 174, 342, 634, 877, 882
SfaNI GCATC 2 cut(s) 151, 647
SfcI CTRYAG 1 cut(s) 486
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 799
SmoI CTYRAG 1 cut(s) 799
Sse9I AATT 4 cut(s) 348, 492, 544, 625
SsiI CCGC 1 cut(s) 563
SspI AATATT 1 cut(s) 424
SspMI CTAG 2 cut(s) 291, 341
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 3 cut(s) 67, 666, 944
TaqI TCGA 5 cut(s) 84, 273, 305, 500, 789
TasI AATT 4 cut(s) 348, 492, 544, 625
TatI WGTACW 1 cut(s) 661
TfiI GAWTC 4 cut(s) 119, 180, 263, 281
Tru1I TTAA 3 cut(s) 645, 813, 900
Tru9I TTAA 3 cut(s) 645, 813, 900
TscAI CASTG 2 cut(s) 562, 705
TseI GCWGC 4 cut(s) 477, 683, 703, 951
TspDTI ATGAA 7 cut(s) 276, 465, 581, 597, 719, 733, 885
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 2 cut(s) 562, 705
XapI RAATTY 1 cut(s) 544
XceI RCATGY 1 cut(s) 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XspI CTAG 2 cut(s) 291, 341
ZrmI AGTACT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.