Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007344

Physical Location & Seq

Genomic Coordinates Forward (+)

19265649 .. 19268769

Gene Structure 3121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20830.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTCAAGACCCATATCTTTATCTCCTATACATAAAAGTCCGGTTATAGAAGTTGAATCGTCTTTAAGTACCTCAGAAAATGTACCAGCGAGATCCACCTTAACTAGAGCAGGGAGTCCTGAACAAGACACAGCTGATTCAAGAACTTCTGGAACTATAAAGGGTGGGGGAAGGTCCTCAGACCTAGGGCTTCTCTTTGCTAATGCAGATGCAAGTCATCCAGGAAGAGTTGGAGGAAACTACCAGACTGACACATCAAGCAACATCATTGGCGATATAGATCCCATGGATATGTCAGAGAGTATGCAAGAAGCAATGCACCGTTCTAACTTGGATATGAGTGGTGCCGAGTATGTCAGGAAAGAAGTTCCTCTTCATGTTTTACCGACCTCGTCTCTTGTTAAGCTCGATTCACCTTTAATGTCATTCACAGAATTGCAACGAGTACTGTATGAAGAGGAGCAAGCGGCTTATAACCAAGCAATCTTGCAAAATATGAGGGATGGGAAGGTGCATCCACTTACTTTCATACACCATACATCAATGTACCAGTCTTCCATGTGCAAATTAATCGAATATTGTTTGAGTCCTGCCATAAGTGCACTGCAATGTCGGTTAAGAGAGAATGAAACTCGGTTAGCAGTGCTCACCGATGAAGTGAAGAATTTGGAAACCGAGATGCATAGAACAAGTGAGTCAAACTCAGGATCTCCTCGTCCAGTTTCATCGCCTGTACTCCGTGGAAGTGCTCCGTTGGGGCACAGGGACTTGTTTAATCCAACTGAATCTGTCAGTGCAAGGAGTCTGGCTGGTTCTGGCAGTCGGAGCCGAAAAGGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006302 GO:0006325 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009314 GO:0009628 GO:0009893 GO:0009987 GO:0010212 GO:0010564 GO:0010604 GO:0010948 GO:0016043 GO:0016569 GO:0016570 GO:0016578 GO:0016579 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0019783 GO:0023052 GO:0031323 GO:0031325 GO:0031570 GO:0031572 GO:0031593 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0036211 GO:0036459 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045739 GO:0045786 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070011 GO:0070531 GO:0070536 GO:0070537 GO:0070552 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0101005 GO:0140030 GO:0140096 GO:1901360 GO:1901564 GO:1901987 GO:1901988 GO:1902749 GO:1902750 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko03440 ko04621 map03440 map04621

Pfam Domains

Protein Families

JAB

Protein Analysis

281

Amino Acids

30.43

Weight (kDa)

6.0

Isoelectric Point (pI)

76.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80210 AT1G80210 AT3G06820 AT3G06820 AT3G06820
fragaria_vesca	FvH4_6g30340 FvH4_6g30340 FvH4_6g30340
malus_domestica	MD09G1221000.v1.1 MD17G1204400.v1.1
prunus_persica	Prupe.3G079900_v2.0.a1 Prupe.3G079900_v2.0.a1 Prupe.3G079900_v2.0.a1
pyrus_communis	pycom1094g00120 pycom17g20830
rosa_chinensis	RchiOBHm_Chr2g0136621
rosa_laevigata	RLG00000019542
rosa_multiflora	Rmu_sc0006440.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108160
rosa_rugosa	Rorug02G0332100
rosa_samantha	Rh2AG382900 Rh2BG389500 Rh2CG369200 Rh2DG406300
rosa_wichuraiana	Rw2G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AccB1I	GGYRCC	1 cut(s)	344
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	3 cut(s)	87, 275, 715
AcsI	RAATTY	1 cut(s)	664
AfaI	GTAC	5 cut(s)	70, 84, 447, 548, 735
AgsI	TTSAA	2 cut(s)	56, 141
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	2 cut(s)	134, 406
AluI	AGCT	2 cut(s)	134, 406
Alw21I	GWGCWC	3 cut(s)	604, 648, 751
Alw26I	GTCTC	1 cut(s)	399
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	3 cut(s)	87, 275, 715
ApaLI	GTGCAC	1 cut(s)	600
ApoI	RAATTY	1 cut(s)	664
AseI	ATTAAT	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	835
AspA2I	CCTAGG	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	2 cut(s)	405, 640
AvaII	GGWCC	1 cut(s)	174
AvrII	CCTAGG	1 cut(s)	184
BaeGI	GKGCMC	2 cut(s)	604, 762
BanI	GGYRCC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	3 cut(s)	604, 648, 751
BccI	CCATC	1 cut(s)	497
BcgI	CGANNNNNNTGC	2 cut(s)	553, 587
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	2 cut(s)	105, 185
BisI	GCNGC	1 cut(s)	468
BlnI	CCTAGG	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	469
BmcAI	AGTACT	1 cut(s)	447
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	2 cut(s)	346, 827
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	3 cut(s)	199, 523, 669
BpiI	GAAGAC	1 cut(s)	546
BplI	GAGNNNNNCTC	2 cut(s)	686, 718
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	3 cut(s)	184, 285, 739
BsaWI	WCCGGW	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	550, 719
Bse3DI	GCAATG	2 cut(s)	321, 614
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	184, 285, 739
BseGI	GGATG	3 cut(s)	217, 508, 514
BseJI	GATNNNNATC	1 cut(s)	279
BseMI	GCAATG	2 cut(s)	321, 614
BseMII	CTCAG	3 cut(s)	87, 192, 717
BseNI	ACTGG	2 cut(s)	550, 719
BseRI	GAGGAG	2 cut(s)	473, 702
BseSI	GKGCMC	2 cut(s)	604, 762
BshNI	GGYRCC	1 cut(s)	344
BsiHKAI	GWGCWC	3 cut(s)	604, 648, 751
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	779
BsmAI	GTCTC	1 cut(s)	399
BsmBI	CGTCTC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	779
Bsp1286I	GDGCHC	4 cut(s)	604, 648, 751, 762
Bsp143I	GATC	3 cut(s)	92, 280, 707
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	1 cut(s)	467
BspCNI	CTCAG	3 cut(s)	86, 191, 716
BspLI	GGNNCC	2 cut(s)	346, 827
BspPI	GGATC	3 cut(s)	87, 275, 715
BspT107I	GGYRCC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	321, 614
BsrI	ACTGG	2 cut(s)	550, 719
BssECI	CCNNGG	3 cut(s)	184, 285, 739
BssMI	GATC	3 cut(s)	92, 280, 707
BssT1I	CCWWGG	2 cut(s)	184, 285
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	323, 450
Bst6I	CTCTTC	3 cut(s)	220, 378, 450
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	3 cut(s)	73, 178, 703
BstDSI	CCRYGG	2 cut(s)	285, 739
BstF5I	GGATG	3 cut(s)	217, 508, 514
BstKTI	GATC	3 cut(s)	95, 283, 710
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	3 cut(s)	92, 280, 707
BstMWI	GCNNNNNNNGC	2 cut(s)	599, 825
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSLI	GKGCMC	2 cut(s)	604, 762
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	3 cut(s)	92, 280, 707
BstYI	RGATCY	3 cut(s)	92, 280, 707
BtgI	CCRYGG	2 cut(s)	285, 739
BtgZI	GCGATG	1 cut(s)	711
BtsCI	GGATG	3 cut(s)	217, 508, 514
BtsI	GCAGTG	2 cut(s)	602, 648
BtsIMutI	CAGTG	3 cut(s)	602, 648, 799
Cac8I	GCNNGC	1 cut(s)	465
Cfr13I	GGNCC	1 cut(s)	174
Csp6I	GTAC	5 cut(s)	69, 83, 446, 547, 734
CviAII	CATG	3 cut(s)	286, 377, 559
CviJI	RGCY	6 cut(s)	134, 190, 406, 470, 809, 828
CviKI_1	RGCY	6 cut(s)	134, 190, 406, 470, 809, 828
CviQI	GTAC	5 cut(s)	69, 83, 446, 547, 734
DdeI	CTNAG	3 cut(s)	73, 178, 703
DpnI	GATC	3 cut(s)	94, 282, 709
DpnII	GATC	3 cut(s)	92, 280, 707
Eam1104I	CTCTTC	3 cut(s)	220, 378, 450
EarI	CTCTTC	3 cut(s)	220, 378, 450
Eco130I	CCWWGG	2 cut(s)	184, 285
Eco47I	GGWCC	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	2 cut(s)	184, 285
EcoT22I	ATGCAT	1 cut(s)	684
ErhI	CCWWGG	2 cut(s)	184, 285
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	3 cut(s)	289, 380, 562
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	3 cut(s)	285, 376, 558
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	3 cut(s)	204, 501, 515
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	2 cut(s)	105, 185
GluI	GCNGC	1 cut(s)	468
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	3 cut(s)	289, 380, 562
HinfI	GANTC	8 cut(s)	56, 115, 137, 410, 586, 695, 785, 802
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	405, 640
Hpy166II	GTNNAC	1 cut(s)	602
Hpy188I	TCNGA	4 cut(s)	76, 181, 298, 825
Hpy188III	TCNNGA	6 cut(s)	6, 119, 141, 150, 358, 705
Hpy8I	GTNNAC	1 cut(s)	602
HpyAV	CCTTC	2 cut(s)	165, 502
HpyCH4III	ACNGT	2 cut(s)	323, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	599, 825
HpyF3I	CTNAG	3 cut(s)	73, 178, 703
Hsp92II	CATG	3 cut(s)	289, 380, 562
Kzo9I	GATC	3 cut(s)	92, 280, 707
LmnI	GCTCC	3 cut(s)	460, 754, 825
LweI	GCATC	3 cut(s)	199, 523, 669
MaeI	CTAG	2 cut(s)	105, 185
MalI	GATC	3 cut(s)	94, 282, 709
MboI	GATC	3 cut(s)	92, 280, 707
MboII	GAAGA	5 cut(s)	237, 365, 467, 546, 673
MflI	RGATCY	3 cut(s)	92, 280, 707
MhlI	GDGCHC	4 cut(s)	604, 648, 751, 762
MluCI	AATT	3 cut(s)	434, 566, 664
MlyI	GAGTC	4 cut(s)	124, 595, 704, 811
MmeI	TCCRAC	3 cut(s)	211, 803, 803
MnlI	CCTC	8 cut(s)	82, 187, 227, 381, 400, 451, 492, 723
Mph1103I	ATGCAT	1 cut(s)	684
MroXI	GAANNNNTTC	1 cut(s)	835
MseI	TTAA	7 cut(s)	65, 101, 402, 419, 569, 617, 774
MslI	CAYNNNNRTG	2 cut(s)	290, 607
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	599, 825
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	3 cut(s)	92, 280, 707
NlaIII	CATG	3 cut(s)	289, 380, 562
NlaIV	GGNNCC	2 cut(s)	346, 827
NmeAIII	GCCGAG	1 cut(s)	373
NsiI	ATGCAT	1 cut(s)	684
PdmI	GAANNNNTTC	1 cut(s)	835
PfeI	GAWTC	4 cut(s)	56, 137, 410, 785
PflFI	GACNNNGTC	1 cut(s)	391
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	4 cut(s)	123, 594, 703, 810
PpsI	GAGTC	4 cut(s)	123, 594, 703, 810
PpuMI	RGGWCCY	1 cut(s)	174
PshBI	ATTAAT	1 cut(s)	569
PsiI	TTATAA	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	346, 827
PspPI	GGNCC	1 cut(s)	174
PspPPI	RGGWCCY	1 cut(s)	174
PsuI	RGATCY	3 cut(s)	92, 280, 707
PsyI	GACNNNGTC	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	5 cut(s)	70, 84, 447, 548, 735
RsaNI	GTAC	5 cut(s)	69, 83, 446, 547, 734
RseI	CAYNNNNRTG	2 cut(s)	290, 607
SaqAI	TTAA	7 cut(s)	65, 101, 402, 419, 569, 617, 774
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	3 cut(s)	92, 280, 707
Sau96I	GGNCC	1 cut(s)	174
ScaI	AGTACT	1 cut(s)	447
SchI	GAGTC	4 cut(s)	124, 595, 704, 811
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	4 cut(s)	604, 648, 751, 762
SfaNI	GCATC	3 cut(s)	199, 523, 669
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	2 cut(s)	290, 607
Sse9I	AATT	3 cut(s)	434, 566, 664
SsiI	CCGC	1 cut(s)	467
SspI	AATATT	1 cut(s)	578
SspMI	CTAG	2 cut(s)	105, 185
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	2 cut(s)	184, 285
TaaI	ACNGT	2 cut(s)	323, 450
TaqI	TCGA	2 cut(s)	408, 573
TasI	AATT	3 cut(s)	434, 566, 664
TatI	WGTACW	2 cut(s)	445, 733
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	4 cut(s)	56, 137, 410, 785
Tru1I	TTAA	7 cut(s)	65, 101, 402, 419, 569, 617, 774
Tru9I	TTAA	7 cut(s)	65, 101, 402, 419, 569, 617, 774
TscAI	CASTG	3 cut(s)	609, 648, 799
TspDTI	ATGAA	7 cut(s)	365, 468, 517, 642, 669, 714, 828
TspGWI	ACGGA	2 cut(s)	728, 741
TspRI	CASTG	3 cut(s)	609, 648, 799
Tth111I	GACNNNGTC	1 cut(s)	391
VneI	GTGCAC	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	174
VspI	ATTAAT	1 cut(s)	569
XapI	RAATTY	1 cut(s)	664
XmaJI	CCTAGG	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	835
XspI	CTAG	2 cut(s)	105, 185
ZrmI	AGTACT	1 cut(s)	447
Zsp2I	ATGCAT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.