FvH4_6g30340

Lys-63-specific deubiquitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007344
Physical Location & Seq
Reverse (-)
23420366 .. 23429635
9270 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30340.t1

Sequence Viewer

Length: 1074 bp
ATGACAATATCATCTGGAAGAACAACAAGAGTGATCGGGTGGTACCATTCACATCCTCATATTACAGTTCTTCCTTCCCATGTCGACGTAAGAACTCAGGCCATGTATCAACTTCTAGATACTGGGTTCATTGGGCTGATATTTTCCTGTTTCAGTGAAGACGTAAACAAGGTTGGACGAATACAAGTCATTGCCTTTCAATCCTCAGATGGGAAGCAGCATCATATGTCAAGACCTATATCTTTATCTCCAGTAAATAAAAGTTCAATTATAGAAGTTGAATCGTCTTTAAGTACCTCAGAAGGTGCATCAGTAAGATATGGCTCTGCTAGAGCAGAAGCTGTTGAACAAGACACAGCTGATTCAAGAACTTCTGGAATTATAAAGGGTGGCGGTCGATCTTCAGACCTTGGGCTTTTCTTTGCTGGTGCTGAGGTAAATCATCTAGAAAGAGAAACAATTGGAGGGAATTACCCCACGGAAACTTCAGCCAATAATATTGTTGATGTAGATCCCATGGATATGTCTGAGGGTATGCAAGAAGCAATGCACCGTTCGAATATGGATATGAGTGGTGCTGAGTATGTCAGAAAAGAAGTTCCTCTTTATGTTTTACCGACCTCTTCTCTCATTAAGCTTGATTCACCTCTAATGTCATTTACGGAATTGCAACGAGTACTATATGAGGAGGAGCGAGCAGCCTATAACCAAGCAATCTCGCAAAATATGAGGGATGGGAAAATGCATCCACTTACTTTCATACATCACACATCAATGTATCAATCTTCCATGTGCAAATTAATCGAATATTGCTTAAGTCCTGCCATATATGCACTGCAGTGTCGGTTAAGAGAAAATGAAATTCGGTTGGCATTGCTCACCGATGAAGTGAAAGGTTTGGAGAACGAAACACGTAGAGGAAGTGAGTCAAATTCTGGATCCTCTCGTCAAGTTCCATCACCTGCACTCCGAGGAAGCGCTCCTTTAGGCCATCGGGAACTGTTTGGTCCAGCTGGATCTATCAGTCCGAGGAGTGTAGCTGGAGGTAGCCGAAGCAGAAAAGGATCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006302 GO:0006325 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009314 GO:0009628 GO:0009893 GO:0009987 GO:0010212 GO:0010564 GO:0010604 GO:0010948 GO:0016043 GO:0016569 GO:0016570 GO:0016578 GO:0016579 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0019783 GO:0023052 GO:0031323 GO:0031325 GO:0031570 GO:0031572 GO:0031593 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0036211 GO:0036459 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045739 GO:0045786 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070011 GO:0070531 GO:0070536 GO:0070537 GO:0070552 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0101005 GO:0140030 GO:0140096 GO:1901360 GO:1901564 GO:1901987 GO:1901988 GO:1902749 GO:1902750 GO:2001020 GO:2001022
KEGG Pathways
Metabolic & Signaling
ko03440 ko04621 map03440 map04621
Pfam Domains
Protein Families
JAB

Protein Analysis

358

Amino Acids

39.14

Weight (kDa)

6.32

Isoelectric Point (pI)

65.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 6 - 39 1.3e-08 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
BRCC36_C PF18110 217 - 298 1.4e-22 BRCC36 C-terminal helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
AarI CACCTGC 1 cut(s) 970
Acc36I ACCTGC 1 cut(s) 970
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 84
AciI CCGC 1 cut(s) 393
AclWI GGATC 5 cut(s) 506, 933, 946, 1024, 1072
AcsI RAATTY 2 cut(s) 861, 931
AcuI CTGAAG 2 cut(s) 387, 471
AfaI GTAC 3 cut(s) 44, 295, 678
AfeI AGCGCT 1 cut(s) 979
AfiI CCNNNNNNNGG 1 cut(s) 210
AflII CTTAAG 1 cut(s) 814
AflIII ACRYGT 1 cut(s) 911
AgsI TTSAA 5 cut(s) 200, 267, 281, 347, 366
AleI CACNNNNGTG 1 cut(s) 838
AluBI AGCT 5 cut(s) 341, 359, 637, 1013, 1040
AluI AGCT 5 cut(s) 341, 359, 637, 1013, 1040
AlwI GGATC 5 cut(s) 506, 933, 946, 1024, 1072
AlwNI CAGNNNCTG 1 cut(s) 341
Aor51HI AGCGCT 1 cut(s) 979
AoxI GGCC 2 cut(s) 99, 988
ApeKI GCWGC 2 cut(s) 217, 698
ApoI RAATTY 2 cut(s) 861, 931
AseI ATTAAT 1 cut(s) 800
Asp718I GGTACC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 980
AspS9I GGNCC 1 cut(s) 1007
AsuHPI GGTGA 3 cut(s) 636, 871, 951
AsuII TTCGAA 1 cut(s) 557
AvaII GGWCC 1 cut(s) 1007
BamHI GGATCC 1 cut(s) 938
BanI GGYRCC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 2 cut(s) 229, 710
BccI CCATC 4 cut(s) 203, 728, 964, 999
BcgI CGANNNNNNTGC 2 cut(s) 784, 818
BfaI CTAG 3 cut(s) 116, 330, 446
BfmI CTRYAG 1 cut(s) 836
BfoI RGCGCY 1 cut(s) 981
BfrI CTTAAG 1 cut(s) 814
BfuAI ACCTGC 1 cut(s) 970
BisI GCNGC 2 cut(s) 218, 699
BlsI GCNGC 2 cut(s) 219, 700
BmcAI AGTACT 1 cut(s) 678
Bme18I GGWCC 1 cut(s) 1007
BmgT120I GGNCC 1 cut(s) 1007
BmiI GGNNCC 2 cut(s) 44, 940
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 3 cut(s) 229, 317, 754
BmuI ACTGGG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 2 cut(s) 234, 1062
Bpu10I CCTNAGC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 557
BsaAI YACGTR 1 cut(s) 914
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 5 cut(s) 409, 477, 516, 970, 1028
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 127, 251
Bse3DI GCAATG 3 cut(s) 189, 552, 872
Bse8I GATNNNNATC 1 cut(s) 510
BseDI CCNNGG 5 cut(s) 409, 477, 516, 970, 1028
BseGI GGATG 3 cut(s) 52, 739, 745
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 3 cut(s) 189, 552, 872
BseMII CTCAG 6 cut(s) 110, 219, 312, 423, 519, 570
BseNI ACTGG 2 cut(s) 127, 251
BseRI GAGGAG 3 cut(s) 701, 704, 1045
BseXI GCAGC 2 cut(s) 229, 710
BsgI GTGCAG 1 cut(s) 948
Bsh1285I CGRYCG 1 cut(s) 397
BshFI GGCC 2 cut(s) 101, 990
BshNI GGYRCC 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 397
BslI CCNNNNNNNGG 1 cut(s) 210
BsnI GGCC 2 cut(s) 101, 990
Bsp119I TTCGAA 1 cut(s) 557
Bsp143I GATC 6 cut(s) 33, 398, 511, 938, 1016, 1064
Bsp19I CCATGG 1 cut(s) 516
BspACI CCGC 1 cut(s) 393
BspANI GGCC 2 cut(s) 101, 990
BspCNI CTCAG 6 cut(s) 109, 218, 311, 424, 520, 571
BspLI GGNNCC 2 cut(s) 44, 940
BspMAI CTGCAG 1 cut(s) 840
BspMI ACCTGC 1 cut(s) 970
BspPI GGATC 5 cut(s) 506, 933, 946, 1024, 1072
BspT104I TTCGAA 1 cut(s) 557
BspT107I GGYRCC 1 cut(s) 42
BspTI CTTAAG 1 cut(s) 814
BsrDI GCAATG 3 cut(s) 189, 552, 872
BsrI ACTGG 2 cut(s) 127, 251
BssECI CCNNGG 5 cut(s) 409, 477, 516, 970, 1028
BssMI GATC 6 cut(s) 33, 398, 511, 938, 1016, 1064
BssT1I CCWWGG 2 cut(s) 409, 516
Bst4CI ACNGT 3 cut(s) 67, 554, 1002
Bst6I CTCTTC 1 cut(s) 628
BstAFI CTTAAG 1 cut(s) 814
BstBAI YACGTR 1 cut(s) 914
BstBI TTCGAA 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 696
BstDEI CTNAG 6 cut(s) 96, 205, 298, 432, 528, 579
BstDSI CCRYGG 2 cut(s) 477, 516
BstF5I GGATG 3 cut(s) 52, 739, 745
BstH2I RGCGCY 1 cut(s) 981
BstHHI GCGC 1 cut(s) 980
BstKTI GATC 6 cut(s) 36, 401, 514, 941, 1019, 1067
BstMBI GATC 6 cut(s) 33, 398, 511, 938, 1016, 1064
BstMCI CGRYCG 1 cut(s) 397
BstMWI GCNNNNNNNGC 1 cut(s) 830
BstSFI CTRYAG 1 cut(s) 836
BstV1I GCAGC 2 cut(s) 229, 710
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 3 cut(s) 511, 938, 1016
BstYI RGATCY 3 cut(s) 511, 938, 1016
BsuRI GGCC 2 cut(s) 101, 990
BtgI CCRYGG 2 cut(s) 477, 516
BtsCI GGATG 3 cut(s) 52, 739, 745
BtsI GCAGTG 2 cut(s) 833, 845
BtsIMutI CAGTG 3 cut(s) 160, 833, 845
BveI ACCTGC 1 cut(s) 970
Cac8I GCNNGC 1 cut(s) 696
CaiI CAGNNNCTG 1 cut(s) 341
CfoI GCGC 1 cut(s) 980
Cfr13I GGNCC 1 cut(s) 1007
Csp6I GTAC 3 cut(s) 43, 294, 677
CviAII CATG 4 cut(s) 80, 103, 517, 790
CviQI GTAC 3 cut(s) 43, 294, 677
DdeI CTNAG 6 cut(s) 96, 205, 298, 432, 528, 579
DpnI GATC 6 cut(s) 35, 400, 513, 940, 1018, 1066
DpnII GATC 6 cut(s) 33, 398, 511, 938, 1016, 1064
Eam1104I CTCTTC 1 cut(s) 628
EarI CTCTTC 1 cut(s) 628
Eco130I CCWWGG 2 cut(s) 409, 516
Eco47I GGWCC 1 cut(s) 1007
Eco47III AGCGCT 1 cut(s) 979
Eco57I CTGAAG 2 cut(s) 387, 471
EcoT14I CCWWGG 2 cut(s) 409, 516
EcoT22I ATGCAT 1 cut(s) 747
ErhI CCWWGG 2 cut(s) 409, 516
FaeI CATG 4 cut(s) 83, 106, 520, 793
FalI AAGNNNNNCTT 4 cut(s) 588, 620, 967, 999
FatI CATG 4 cut(s) 79, 102, 516, 789
FauNDI CATATG 1 cut(s) 225
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 218, 699
FokI GGATG 3 cut(s) 39, 732, 746
Fsp4HI GCNGC 2 cut(s) 218, 699
FspBI CTAG 3 cut(s) 116, 330, 446
GlaI GCGC 1 cut(s) 979
GluI GCNGC 2 cut(s) 218, 699
GsuI CTGGAG 2 cut(s) 234, 1062
HaeII RGCGCY 1 cut(s) 981
HaeIII GGCC 2 cut(s) 101, 990
HhaI GCGC 1 cut(s) 980
Hin1II CATG 4 cut(s) 83, 106, 520, 793
Hin6I GCGC 1 cut(s) 978
HinP1I GCGC 1 cut(s) 978
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 4 cut(s) 281, 362, 641, 926
HphI GGTGA 3 cut(s) 636, 871, 951
Hpy166II GTNNAC 2 cut(s) 85, 166
Hpy188I TCNGA 7 cut(s) 208, 301, 406, 529, 590, 971, 1029
Hpy188III TCNNGA 8 cut(s) 15, 116, 231, 366, 375, 446, 936, 995
Hpy8I GTNNAC 2 cut(s) 85, 166
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 84, 296
HpyCH4III ACNGT 3 cut(s) 67, 554, 1002
HpyCH4IV ACGT 3 cut(s) 87, 162, 913
HpyCH4V TGCA 9 cut(s) 308, 538, 550, 670, 745, 795, 833, 838, 965
HpyF10VI GCNNNNNNNGC 1 cut(s) 830
HpyF3I CTNAG 6 cut(s) 96, 205, 298, 432, 528, 579
HpySE526I ACGT 3 cut(s) 87, 162, 913
Hsp92II CATG 4 cut(s) 83, 106, 520, 793
HspAI GCGC 1 cut(s) 978
KpnI GGTACC 1 cut(s) 46
Kzo9I GATC 6 cut(s) 33, 398, 511, 938, 1016, 1064
LmnI GCTCC 2 cut(s) 691, 985
Lsp1109I GCAGC 2 cut(s) 229, 710
LweI GCATC 3 cut(s) 229, 317, 754
MaeI CTAG 3 cut(s) 116, 330, 446
MaeII ACGT 3 cut(s) 87, 162, 913
MalI GATC 6 cut(s) 35, 400, 513, 940, 1018, 1066
MboI GATC 6 cut(s) 33, 398, 511, 938, 1016, 1064
MboII GAAGA 6 cut(s) 30, 62, 170, 393, 615, 777
MfeI CAATTG 1 cut(s) 459
MflI RGATCY 3 cut(s) 511, 938, 1016
MluCI AATT 8 cut(s) 267, 378, 459, 469, 665, 797, 861, 931
MlyI GAGTC 1 cut(s) 935
MmeI TCCRAC 1 cut(s) 154
Mph1103I ATGCAT 1 cut(s) 747
MseI TTAA 5 cut(s) 290, 633, 800, 815, 848
MslI CAYNNNNRTG 3 cut(s) 521, 773, 838
MspA1I CMGCKG 2 cut(s) 359, 1013
MspCI CTTAAG 1 cut(s) 814
MunI CAATTG 1 cut(s) 459
MwoI GCNNNNNNNGC 1 cut(s) 830
NcoI CCATGG 1 cut(s) 516
NdeI CATATG 1 cut(s) 225
NdeII GATC 6 cut(s) 33, 398, 511, 938, 1016, 1064
NlaIII CATG 4 cut(s) 83, 106, 520, 793
NlaIV GGNNCC 2 cut(s) 44, 940
NsiI ATGCAT 1 cut(s) 747
NspV TTCGAA 1 cut(s) 557
OliI CACNNNNGTG 1 cut(s) 838
PaqCI CACCTGC 1 cut(s) 970
PfeI GAWTC 3 cut(s) 281, 362, 641
PkrI GCNGC 2 cut(s) 219, 700
PleI GAGTC 1 cut(s) 934
PpsI GAGTC 1 cut(s) 934
Ppu21I YACGTR 1 cut(s) 914
PshBI ATTAAT 1 cut(s) 800
PsiI TTATAA 1 cut(s) 383
PspN4I GGNNCC 2 cut(s) 44, 940
PspPI GGNCC 1 cut(s) 1007
PstI CTGCAG 1 cut(s) 840
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 3 cut(s) 511, 938, 1016
PvuII CAGCTG 2 cut(s) 359, 1013
RsaI GTAC 3 cut(s) 44, 295, 678
RsaNI GTAC 3 cut(s) 43, 294, 677
RseI CAYNNNNRTG 3 cut(s) 521, 773, 838
SalI GTCGAC 1 cut(s) 83
SaqAI TTAA 5 cut(s) 290, 633, 800, 815, 848
SatI GCNGC 2 cut(s) 218, 699
Sau3AI GATC 6 cut(s) 33, 398, 511, 938, 1016, 1064
Sau96I GGNCC 1 cut(s) 1007
ScaI AGTACT 1 cut(s) 678
SchI GAGTC 1 cut(s) 935
SfaNI GCATC 3 cut(s) 229, 317, 754
SfcI CTRYAG 1 cut(s) 836
SfuI TTCGAA 1 cut(s) 557
SinI GGWCC 1 cut(s) 1007
SmiMI CAYNNNNRTG 3 cut(s) 521, 773, 838
SmlI CTYRAG 1 cut(s) 814
SmoI CTYRAG 1 cut(s) 814
Sse9I AATT 8 cut(s) 267, 378, 459, 469, 665, 797, 861, 931
SsiI CCGC 1 cut(s) 393
SspI AATATT 2 cut(s) 499, 809
SspMI CTAG 3 cut(s) 116, 330, 446
StyI CCWWGG 2 cut(s) 409, 516
TaaI ACNGT 3 cut(s) 67, 554, 1002
TaiI ACGT 3 cut(s) 90, 165, 916
TaqI TCGA 4 cut(s) 84, 397, 557, 804
TasI AATT 8 cut(s) 267, 378, 459, 469, 665, 797, 861, 931
TatI WGTACW 1 cut(s) 676
TfiI GAWTC 3 cut(s) 281, 362, 641
Tru1I TTAA 5 cut(s) 290, 633, 800, 815, 848
Tru9I TTAA 5 cut(s) 290, 633, 800, 815, 848
TscAI CASTG 3 cut(s) 160, 840, 845
TseI GCWGC 2 cut(s) 217, 698
TspDTI ATGAA 4 cut(s) 118, 748, 873, 900
TspGWI ACGGA 2 cut(s) 494, 677
TspRI CASTG 3 cut(s) 160, 840, 845
Vha464I CTTAAG 1 cut(s) 814
VpaK11BI GGWCC 1 cut(s) 1007
VspI ATTAAT 1 cut(s) 800
XapI RAATTY 2 cut(s) 861, 931
XbaI TCTAGA 2 cut(s) 115, 445
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 3 cut(s) 116, 330, 446
ZrmI AGTACT 1 cut(s) 678
Zsp2I ATGCAT 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.