AT1G80380

D-glycerate 3-kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
30217116 .. 30220595
3480 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80380.6

Sequence Viewer

Length: 1089 bp
ATGGCGGTCGCAATATCTGGGAGTAGTTTGATATCGTCGACTCTTCAGCATTATAATAATCGGATTTATATCCGAGATTATCCGATTCCGTGTCACTCTTCTAATCCAATTTGCAATTCTTTTAATTTCAAAAGACGTTCGTTCTCTCCTTCTTCCCCCAAATTTAACGACCATGTCGTTAACCCTTCCTCTTCTTATTTATCCTCCAAGCTTTCTCCAATTCGAACCCATTCCTCTTTCGCTGCGTGTGGCTGCTCCTGGATTCAAGACAATTCAATGGTTCATGATTATGCTACAACAACTAATGGGACGTCCAAGCGTTGCTCGGCGTTACCAACAACAAACACAGTGGATGTCTCTTCGGTGTCAGATCTTTTTGAATTCATATGCTCGGGTCCTCTCGTAAACAAGATTGGTATCACTCCTCAAAGAGTTGGCCAGTCTATTGACAAATGGTTACTCTACGGCTCACAACTTTGTAGACTGTTTCAGCTTAATGAGCTTAAGCTTACAATTCCTCAGAAAGCTAGGCTATACCACTACTACATACCCGTTTTTATTTGGTGCGAAGATCAGATTGCTTTGCATAATTCCAAGTTTAAAGATGGAGATGATGTACCTAGGTACAATAAGTCTGCCTATAGTGGGAGAGGTGACAGAGCCGATTCATCAACATGGCCTGAAGTTGAAGGACCTCTATCGGTTATTCTCTTTGAGGGATGGATGCTTGGTTTTAAGCCTCTTCCAGCTGACGTTGTTAAAGCAGTTGACCCACAGCTGGAGGTTGTGAATAAGAACCTTGAAGCGTATTACGACGCATGGGACAAGTACATCGATGCTTGGGTCGTCATCAAAATCCAGGACCCAAGTTATGTATACCGGTGGCGTCTTCAGGCGGAAATCGCCATGAGGCAGGATGGCCAAGCTGGGATGTCGGATGAGGAGGTGAATGACTTTGTGTCGCGGTATTTGCCGGCGTATAAGGCCTATCTTCCAACTCTTTACGCGGAAGGGCCAAGCGGCTCAGACCCAGACCGTGTCCTTGCGATAGATATCGATGAAGAAAGGAACCCGATACTCGCAAACTAA

Protein Analysis

362

Amino Acids

40.83

Weight (kDa)

5.83

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AatII GACGTC 1 cut(s) 314
AccI GTMKAC 3 cut(s) 38, 481, 876
AccII CGCG 2 cut(s) 964, 1007
AciI CCGC 5 cut(s) 5, 896, 964, 1007, 1020
AcoI YGGCCR 2 cut(s) 436, 919
AcsI RAATTY 2 cut(s) 161, 380
AcuI CTGAAG 3 cut(s) 29, 702, 875
AcyI GRCGYC 2 cut(s) 311, 886
AfaI GTAC 3 cut(s) 618, 626, 830
AfiI CCNNNNNNNGG 2 cut(s) 645, 778
AflII CTTAAG 1 cut(s) 503
AgeI ACCGGT 1 cut(s) 879
AgsI TTSAA 6 cut(s) 130, 266, 276, 380, 689, 803
AhdI GACNNNNNGTC 1 cut(s) 958
AjnI CCWGG 2 cut(s) 257, 858
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 8 cut(s) 211, 493, 502, 508, 527, 749, 778, 926
AluI AGCT 8 cut(s) 211, 493, 502, 508, 527, 749, 778, 926
Alw26I GTCTC 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 391
AoxI GGCC 5 cut(s) 436, 677, 919, 984, 1013
ApeKI GCWGC 2 cut(s) 242, 252
ApoI RAATTY 2 cut(s) 161, 380
AsiGI ACCGGT 1 cut(s) 879
Asp700I GAANNNNTTC 1 cut(s) 229
AspA2I CCTAGG 1 cut(s) 620
AspS9I GGNCC 4 cut(s) 395, 692, 862, 1013
AsuHPI GGTGA 2 cut(s) 665, 958
AsuII TTCGAA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 391
AvaII GGWCC 3 cut(s) 395, 692, 862
AvrII CCTAGG 1 cut(s) 620
BalI TGGCCA 2 cut(s) 438, 921
BbsI GAAGAC 1 cut(s) 881
BbvI GCAGC 2 cut(s) 229, 239
BccI CCATC 3 cut(s) 599, 714, 911
BceAI ACGGC 1 cut(s) 481
BciT130I CCWGG 2 cut(s) 259, 860
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 2 cut(s) 528, 621
BfmI CTRYAG 1 cut(s) 640
BfrI CTTAAG 1 cut(s) 503
BglII AGATCT 1 cut(s) 370
BisI GCNGC 3 cut(s) 243, 253, 1021
BlnI CCTAGG 1 cut(s) 620
BlsI GCNGC 3 cut(s) 244, 254, 1022
Bme1390I CCNGG 2 cut(s) 259, 860
Bme18I GGWCC 3 cut(s) 395, 692, 862
BmeRI GACNNNNNGTC 1 cut(s) 958
BmeT110I CYCGRG 1 cut(s) 391
BmgT120I GGNCC 4 cut(s) 395, 692, 862, 1013
BmiI GGNNCC 3 cut(s) 396, 864, 1070
BmrFI CCNGG 2 cut(s) 259, 860
BmsI GCATC 2 cut(s) 714, 826
BpiI GAAGAC 1 cut(s) 881
BpmI CTGGAG 1 cut(s) 800
Bpu14I TTCGAA 1 cut(s) 223
Bsa29I ATCGAT 2 cut(s) 834, 1056
BsaBI GATNNNNATC 3 cut(s) 68, 416, 1052
BsaHI GRCGYC 2 cut(s) 311, 886
BsaJI CCNNGG 1 cut(s) 620
BsaWI WCCGGW 1 cut(s) 879
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 2 cut(s) 645, 778
Bse118I RCCGGY 2 cut(s) 879, 973
Bse1I ACTGG 1 cut(s) 439
Bse8I GATNNNNATC 3 cut(s) 68, 416, 1052
BseBI CCWGG 2 cut(s) 259, 860
BseCI ATCGAT 2 cut(s) 834, 1056
BseDI CCNNGG 1 cut(s) 620
BseGI GGATG 6 cut(s) 358, 725, 729, 922, 936, 943
BseJI GATNNNNATC 3 cut(s) 68, 416, 1052
BseLI CCNNNNNNNGG 2 cut(s) 645, 778
BseMII CTCAG 2 cut(s) 533, 1038
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 2 cut(s) 414, 956
BseXI GCAGC 2 cut(s) 229, 239
BseYI CCCAGC 1 cut(s) 926
Bsh1236I CGCG 2 cut(s) 964, 1007
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 5 cut(s) 438, 679, 921, 986, 1015
BshTI ACCGGT 1 cut(s) 879
BshVI ATCGAT 2 cut(s) 834, 1056
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 391
BsiSI CCGG 2 cut(s) 880, 974
BslFI GGGAC 2 cut(s) 322, 836
BslI CCNNNNNNNGG 2 cut(s) 645, 778
BsmAI GTCTC 1 cut(s) 361
BsmFI GGGAC 2 cut(s) 322, 836
BsnI GGCC 5 cut(s) 438, 679, 921, 986, 1015
BsoBI CYCGRG 1 cut(s) 391
Bsp119I TTCGAA 1 cut(s) 223
Bsp143I GATC 2 cut(s) 370, 571
BspACI CCGC 5 cut(s) 5, 896, 964, 1007, 1020
BspANI GGCC 5 cut(s) 438, 679, 921, 986, 1015
BspCNI CTCAG 2 cut(s) 532, 1037
BspDI ATCGAT 2 cut(s) 834, 1056
BspFNI CGCG 2 cut(s) 964, 1007
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 3 cut(s) 396, 864, 1070
BspT104I TTCGAA 1 cut(s) 223
BspTI CTTAAG 1 cut(s) 503
BsrFI RCCGGY 2 cut(s) 879, 973
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 2 cut(s) 879, 973
BssECI CCNNGG 1 cut(s) 620
BssMI GATC 2 cut(s) 370, 571
BssNAI GTATAC 1 cut(s) 877
BssNI GRCGYC 2 cut(s) 311, 886
BssT1I CCWWGG 1 cut(s) 620
Bst1107I GTATAC 1 cut(s) 877
Bst2UI CCWGG 2 cut(s) 259, 860
Bst4CI ACNGT 3 cut(s) 349, 486, 1037
Bst6I CTCTTC 5 cut(s) 48, 103, 196, 364, 747
BstACI GRCGYC 2 cut(s) 311, 886
BstAFI CTTAAG 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 975
BstDEI CTNAG 2 cut(s) 519, 1024
BstF5I GGATG 6 cut(s) 358, 725, 729, 922, 936, 943
BstFNI CGCG 2 cut(s) 964, 1007
BstKTI GATC 2 cut(s) 373, 574
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 2 cut(s) 370, 571
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 499, 902, 970, 983
BstNI CCWGG 2 cut(s) 259, 860
BstSCI CCNGG 2 cut(s) 257, 858
BstSFI CTRYAG 1 cut(s) 640
BstUI CGCG 2 cut(s) 964, 1007
BstV1I GCAGC 2 cut(s) 229, 239
BstV2I GAAGAC 1 cut(s) 881
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BstZ17I GTATAC 1 cut(s) 877
Bsu15I ATCGAT 2 cut(s) 834, 1056
BsuRI GGCC 5 cut(s) 438, 679, 921, 986, 1015
BsuTUI ATCGAT 2 cut(s) 834, 1056
BtsCI GGATG 6 cut(s) 358, 725, 729, 922, 936, 943
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 975
CciI TCATGA 1 cut(s) 283
Cfr10I RCCGGY 2 cut(s) 879, 973
Cfr13I GGNCC 4 cut(s) 395, 692, 862, 1013
ClaI ATCGAT 2 cut(s) 834, 1056
CseI GACGC 2 cut(s) 824, 875
Csp6I GTAC 3 cut(s) 617, 625, 829
CspAI ACCGGT 1 cut(s) 879
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 5 cut(s) 173, 284, 675, 819, 907
CviQI GTAC 3 cut(s) 617, 625, 829
DdeI CTNAG 2 cut(s) 519, 1024
DpnI GATC 2 cut(s) 372, 573
DpnII GATC 2 cut(s) 370, 571
DraI TTTAAA 1 cut(s) 601
DriI GACNNNNNGTC 1 cut(s) 958
EaeI YGGCCR 2 cut(s) 436, 919
Eam1104I CTCTTC 5 cut(s) 48, 103, 196, 364, 747
Eam1105I GACNNNNNGTC 1 cut(s) 958
EarI CTCTTC 5 cut(s) 48, 103, 196, 364, 747
EciI GGCGGA 1 cut(s) 911
Eco130I CCWWGG 1 cut(s) 620
Eco147I AGGCCT 1 cut(s) 986
Eco32I GATATC 2 cut(s) 33, 1054
Eco47I GGWCC 3 cut(s) 395, 692, 862
Eco57I CTGAAG 3 cut(s) 29, 702, 875
Eco88I CYCGRG 1 cut(s) 391
EcoO109I RGGNCCY 3 cut(s) 395, 692, 862
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 257, 858
EcoRV GATATC 2 cut(s) 33, 1054
EcoT14I CCWWGG 1 cut(s) 620
ErhI CCWWGG 1 cut(s) 620
FaeI CATG 5 cut(s) 176, 287, 678, 822, 910
FaqI GGGAC 2 cut(s) 322, 836
FatI CATG 5 cut(s) 172, 283, 674, 818, 906
FauNDI CATATG 1 cut(s) 386
FblI GTMKAC 3 cut(s) 38, 481, 876
Fnu4HI GCNGC 3 cut(s) 243, 253, 1021
FokI GGATG 6 cut(s) 365, 732, 736, 929, 943, 950
Fsp4HI GCNGC 3 cut(s) 243, 253, 1021
FspBI CTAG 2 cut(s) 528, 621
GluI GCNGC 3 cut(s) 243, 253, 1021
GsaI CCCAGC 1 cut(s) 930
GsuI CTGGAG 1 cut(s) 800
HaeIII GGCC 5 cut(s) 438, 679, 921, 986, 1015
HapII CCGG 2 cut(s) 880, 974
HgaI GACGC 2 cut(s) 824, 875
Hin1I GRCGYC 2 cut(s) 311, 886
Hin1II CATG 5 cut(s) 176, 287, 678, 822, 910
HincII GTYRAC 3 cut(s) 39, 181, 769
HindII GTYRAC 3 cut(s) 39, 181, 769
HindIII AAGCTT 2 cut(s) 209, 506
HinfI GANTC 4 cut(s) 40, 85, 262, 665
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 2 cut(s) 880, 974
HphI GGTGA 2 cut(s) 665, 958
Hpy166II GTNNAC 6 cut(s) 39, 181, 406, 482, 769, 877
Hpy188I TCNGA 8 cut(s) 63, 74, 84, 370, 522, 576, 937, 1027
Hpy188III TCNNGA 2 cut(s) 266, 284
Hpy8I GTNNAC 6 cut(s) 39, 181, 406, 482, 769, 877
Hpy99I CGWCG 2 cut(s) 40, 818
HpyAV CCTTC 4 cut(s) 159, 195, 683, 1004
HpyCH4III ACNGT 3 cut(s) 349, 486, 1037
HpyCH4IV ACGT 3 cut(s) 136, 311, 753
HpyCH4V TGCA 2 cut(s) 114, 586
HpyF10VI GCNNNNNNNGC 4 cut(s) 499, 902, 970, 983
HpyF3I CTNAG 2 cut(s) 519, 1024
HpySE526I ACGT 3 cut(s) 136, 311, 753
Hsp92I GRCGYC 2 cut(s) 311, 886
Hsp92II CATG 5 cut(s) 176, 287, 678, 822, 910
KroI GCCGGC 1 cut(s) 973
KroNI GCCGGC 1 cut(s) 975
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 2 cut(s) 370, 571
LmnI GCTCC 1 cut(s) 260
Lsp1109I GCAGC 2 cut(s) 229, 239
LweI GCATC 2 cut(s) 714, 826
MaeI CTAG 2 cut(s) 528, 621
MaeII ACGT 3 cut(s) 136, 311, 753
MaeIII GTNAC 4 cut(s) 92, 330, 456, 653
MalI GATC 2 cut(s) 372, 573
MboI GATC 2 cut(s) 370, 571
MflI RGATCY 1 cut(s) 370
MlsI TGGCCA 2 cut(s) 438, 921
MluCI AATT 9 cut(s) 108, 115, 124, 161, 219, 271, 380, 513, 589
MluNI TGGCCA 2 cut(s) 438, 921
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 915, 1019
Mox20I TGGCCA 2 cut(s) 438, 921
MroNI GCCGGC 1 cut(s) 973
MroXI GAANNNNTTC 1 cut(s) 229
MscI TGGCCA 2 cut(s) 438, 921
MseI TTAA 8 cut(s) 123, 165, 180, 495, 504, 600, 735, 759
MslI CAYNNNNRTG 2 cut(s) 288, 673
Msp20I TGGCCA 2 cut(s) 438, 921
MspA1I CMGCKG 2 cut(s) 749, 778
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 2 cut(s) 880, 974
MspR9I CCNGG 2 cut(s) 259, 860
MvaI CCWGG 2 cut(s) 259, 860
MvnI CGCG 2 cut(s) 964, 1007
MwoI GCNNNNNNNGC 4 cut(s) 499, 902, 970, 983
NaeI GCCGGC 1 cut(s) 975
NdeI CATATG 1 cut(s) 386
NdeII GATC 2 cut(s) 370, 571
NgoMIV GCCGGC 1 cut(s) 973
NlaIII CATG 5 cut(s) 176, 287, 678, 822, 910
NlaIV GGNNCC 3 cut(s) 396, 864, 1070
NmeAIII GCCGAG 1 cut(s) 305
NmuCI GTSAC 2 cut(s) 92, 653
NspV TTCGAA 1 cut(s) 223
PagI TCATGA 1 cut(s) 283
PceI AGGCCT 1 cut(s) 986
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdiI GCCGGC 1 cut(s) 975
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 3 cut(s) 85, 262, 665
PflFI GACNNNGTC 2 cut(s) 173, 1037
PfoI TCCNGGA 2 cut(s) 257, 858
PinAI ACCGGT 1 cut(s) 879
PkrI GCNGC 3 cut(s) 244, 254, 1022
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PpuMI RGGWCCY 3 cut(s) 395, 692, 862
PsiI TTATAA 1 cut(s) 54
Psp5II RGGWCCY 3 cut(s) 395, 692, 862
Psp6I CCWGG 2 cut(s) 257, 858
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 2 cut(s) 257, 858
PspN4I GGNNCC 3 cut(s) 396, 864, 1070
PspPI GGNCC 4 cut(s) 395, 692, 862, 1013
PspPPI RGGWCCY 3 cut(s) 395, 692, 862
PsuI RGATCY 1 cut(s) 370
PsyI GACNNNGTC 2 cut(s) 173, 1037
PvuII CAGCTG 2 cut(s) 749, 778
RsaI GTAC 3 cut(s) 618, 626, 830
RsaNI GTAC 3 cut(s) 617, 625, 829
RseI CAYNNNNRTG 2 cut(s) 288, 673
SalI GTCGAC 1 cut(s) 37
SaqAI TTAA 8 cut(s) 123, 165, 180, 495, 504, 600, 735, 759
SatI GCNGC 3 cut(s) 243, 253, 1021
Sau3AI GATC 2 cut(s) 370, 571
Sau96I GGNCC 4 cut(s) 395, 692, 862, 1013
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 2 cut(s) 259, 860
SfaNI GCATC 2 cut(s) 714, 826
SfcI CTRYAG 1 cut(s) 640
SfuI TTCGAA 1 cut(s) 223
SinI GGWCC 3 cut(s) 395, 692, 862
SmiMI CAYNNNNRTG 2 cut(s) 288, 673
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 9 cut(s) 108, 115, 124, 161, 219, 271, 380, 513, 589
SseBI AGGCCT 1 cut(s) 986
SsiI CCGC 5 cut(s) 5, 896, 964, 1007, 1020
SspMI CTAG 2 cut(s) 528, 621
StuI AGGCCT 1 cut(s) 986
StyD4I CCNGG 2 cut(s) 257, 858
StyI CCWWGG 1 cut(s) 620
TaaI ACNGT 3 cut(s) 349, 486, 1037
TaiI ACGT 3 cut(s) 139, 314, 756
TaqI TCGA 4 cut(s) 38, 223, 834, 1056
TasI AATT 9 cut(s) 108, 115, 124, 161, 219, 271, 380, 513, 589
TatI WGTACW 1 cut(s) 828
TauI GCSGC 1 cut(s) 1023
TfiI GAWTC 3 cut(s) 85, 262, 665
Tru1I TTAA 8 cut(s) 123, 165, 180, 495, 504, 600, 735, 759
Tru9I TTAA 8 cut(s) 123, 165, 180, 495, 504, 600, 735, 759
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 2 cut(s) 92, 653
TseI GCWGC 2 cut(s) 242, 252
Tsp45I GTSAC 2 cut(s) 92, 653
TspDTI ATGAA 4 cut(s) 272, 373, 657, 1074
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 1 cut(s) 354
Tth111I GACNNNGTC 2 cut(s) 173, 1037
Vha464I CTTAAG 1 cut(s) 503
VpaK11BI GGWCC 3 cut(s) 395, 692, 862
XapI RAATTY 2 cut(s) 161, 380
XmaJI CCTAGG 1 cut(s) 620
XmiI GTMKAC 3 cut(s) 38, 481, 876
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 2 cut(s) 528, 621
ZraI GACGTC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.