Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003841

Physical Location & Seq

Genomic Coordinates Forward (+)

12694704 .. 12702132

Gene Structure 7429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAACAAACAGACCAAACTCCTCATCCAAGCTCTCTTCAATGCCAACCCACCTCTCAAAGTCTAGGACTCTTACTGCAGGCACTGGATGTTCCTGGATGCAAGACAATTCCATGCATCACAACGGTGCTGCTGACAGTGAATGTGATATCTCAGCACAGATCCTTGTACAAAGATGGAGAAGACATACCTCCTCTAGTGATTGGGTTTAGTGCACCACAAGGTTGTGGAAAGACTACACTTGTCTTTGCTCTTGATTATCTTTTCAAAGTAACTGGCAGGAAGTCTGCCACAATAACCATTGATGACTTTTATTTGACAGCTGAGAATCAGGCTAAACTAAGAGAAGCGCATCCAGGAAATGCACTTTTAGAGTTACGTGAAAATGCTGGCAGCCATGATCTTCCATTCTCTGTAGAGACACTGACTGCTCTAAGCAATTTGAGTAAAGAAGGTATGAAGATGAAGCTACCCCGATATGACAAGTCTGCTTACAATGGAAAGGGGGACAGAGCTGATCCTTCGACATGGCCCGAGGTGGAAGGGCCGCTTACTGTTGGATGCTTGGCTTCAAACCCGTTCCTGTGGAAGTGGTCAAAGCAGTCGATCCACAGCCAAAGCTTCTTGAGCACAAAACAAAAATGCCTTGAACTACCCCAGACCCTTCTAGTCGATCTTCTAGAGAAGATAAGGAGAGAAGCAATAGAAACTGCTAAACTGCTAGCAACAACAGGTAACAAACAAGGATCTTTCAGAGGCCTCAAGCTAGAAAGTTTCATTGAATTTGGCAACGAATCTGAAATGTATGATTTGATGATCCATTACACTGGAAAGGAATATGATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0008887 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009941 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031967 GO:0031975 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00260 ko00561 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00561 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

PRK

Protein Analysis

282

Amino Acids

31.27

Weight (kDa)

5.91

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380
fragaria_vesca	FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840
malus_domestica	MD17G1198400.v1.1
prunus_persica	Prupe.3G075100_v2.0.a1
pyrus_communis	pycom09g13320 pycom17g20320
rosa_chinensis	RchiOBHm_Chr2g0137281
rosa_laevigata	RLG00000019647
rosa_multiflora	Rmu_sc0000894.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107230 Rroxscaffold_2G00142010 Rroxscaffold_3G00228320 Rroxscaffold_5G00336080 Rroxscaffold_5G00336090
rosa_rugosa	Rorug02G0340700
rosa_samantha	Rh2AG389000 Rh2BG396800 Rh2CG376500 Rh2DG411800
rosa_wichuraiana	Rw2G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	548
AclWI	GGATC	5 cut(s)	156, 512, 601, 754, 811
AcsI	RAATTY	1 cut(s)	782
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	41, 268, 573, 650, 782
AjnI	CCWGG	2 cut(s)	94, 355
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	6 cut(s)	33, 323, 469, 515, 621, 766
AluI	AGCT	6 cut(s)	33, 323, 469, 515, 621, 766
Alw21I	GWGCWC	2 cut(s)	217, 632
Alw26I	GTCTC	1 cut(s)	413
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	5 cut(s)	156, 512, 601, 754, 811
AlwNI	CAGNNNCTG	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	3 cut(s)	530, 545, 757
ApaLI	GTGCAC	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	130, 393
ApoI	RAATTY	1 cut(s)	782
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	531, 545
AsuNHI	GCTAGC	1 cut(s)	721
AvaI	CYCGRG	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	217, 632
BbvI	GCAGC	2 cut(s)	117, 405
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	2 cut(s)	96, 357
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	6 cut(s)	65, 197, 668, 680, 722, 767
BfmI	CTRYAG	3 cut(s)	77, 414, 845
BisI	GCNGC	3 cut(s)	131, 394, 548
BlsI	GCNGC	3 cut(s)	132, 395, 549
Bme1390I	CCNGG	2 cut(s)	96, 357
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	2 cut(s)	531, 545
BmrFI	CCNGG	2 cut(s)	96, 357
BmsI	GCATC	4 cut(s)	89, 126, 361, 551
BmtI	GCTAGC	1 cut(s)	725
BpiI	GAAGAC	1 cut(s)	189
BpuEI	CTTGAG	2 cut(s)	646, 746
BsaAI	YACGTR	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	534
Bse1I	ACTGG	3 cut(s)	90, 280, 832
BseBI	CCWGG	2 cut(s)	96, 357
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	5 cut(s)	25, 94, 104, 352, 566
BseMII	CTCAG	2 cut(s)	167, 315
BseNI	ACTGG	3 cut(s)	90, 280, 832
BseRI	GAGGAG	2 cut(s)	12, 183
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	117, 405
BshFI	GGCC	3 cut(s)	532, 547, 759
BsiHKAI	GWGCWC	2 cut(s)	217, 632
BsiHKCI	CYCGRG	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	532, 547, 759
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	217, 632
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	8 cut(s)	161, 400, 517, 606, 673, 746, 816, 841
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	3 cut(s)	532, 547, 759
BspCNI	CTCAG	2 cut(s)	166, 316
BspMAI	CTGCAG	1 cut(s)	81
BspOI	GCTAGC	1 cut(s)	725
BspPI	GGATC	5 cut(s)	156, 512, 601, 754, 811
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	90, 280, 832
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	8 cut(s)	161, 400, 517, 606, 673, 746, 816, 841
Bst2UI	CCWGG	2 cut(s)	96, 357
Bst4CI	ACNGT	3 cut(s)	127, 139, 556
Bst6I	CTCTTC	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	3 cut(s)	81, 391, 723
BstDEI	CTNAG	4 cut(s)	153, 324, 341, 434
BstF5I	GGATG	5 cut(s)	25, 94, 104, 352, 566
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	8 cut(s)	164, 403, 520, 609, 676, 749, 819, 844
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	8 cut(s)	161, 400, 517, 606, 673, 746, 816, 841
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstNI	CCWGG	2 cut(s)	96, 357
BstSCI	CCNGG	2 cut(s)	94, 355
BstSFI	CTRYAG	3 cut(s)	77, 414, 845
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	117, 405
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	161, 746
BstXI	CCANNNNNNTGG	1 cut(s)	827
BstYI	RGATCY	2 cut(s)	161, 746
BsuRI	GGCC	3 cut(s)	532, 547, 759
BtsCI	GGATG	5 cut(s)	25, 94, 104, 352, 566
BtsIMutI	CAGTG	4 cut(s)	83, 144, 422, 825
Cac8I	GCNNGC	3 cut(s)	81, 391, 723
CaiI	CAGNNNCTG	1 cut(s)	85
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	531, 545
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	3 cut(s)	114, 398, 528
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	4 cut(s)	153, 324, 341, 434
DpnI	GATC	8 cut(s)	163, 402, 519, 608, 675, 748, 818, 843
DpnII	GATC	8 cut(s)	161, 400, 517, 606, 673, 746, 816, 841
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	759
Eco32I	GATATC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	94, 355
EcoRV	GATATC	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	119
FaeI	CATG	3 cut(s)	117, 401, 531
FaiI	YATR	9 cut(s)	115, 188, 399, 458, 480, 529, 807, 840, 847
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	3 cut(s)	113, 397, 527
Fnu4HI	GCNGC	3 cut(s)	131, 394, 548
FokI	GGATG	5 cut(s)	12, 101, 111, 339, 573
Fsp4HI	GCNGC	3 cut(s)	131, 394, 548
FspBI	CTAG	6 cut(s)	65, 197, 668, 680, 722, 767
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	3 cut(s)	131, 394, 548
HaeIII	GGCC	3 cut(s)	532, 547, 759
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	3 cut(s)	117, 401, 531
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HindIII	AAGCTT	1 cut(s)	619
HinfI	GANTC	3 cut(s)	69, 328, 794
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	2 cut(s)	755, 799
Hpy188III	TCNNGA	3 cut(s)	254, 625, 680
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	4 cut(s)	446, 531, 536, 674
HpyCH4III	ACNGT	3 cut(s)	127, 139, 556
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	5 cut(s)	79, 102, 117, 215, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpyF3I	CTNAG	4 cut(s)	153, 324, 341, 434
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	3 cut(s)	117, 401, 531
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	8 cut(s)	161, 400, 517, 606, 673, 746, 816, 841
Lsp1109I	GCAGC	2 cut(s)	117, 405
LweI	GCATC	4 cut(s)	89, 126, 361, 551
MaeI	CTAG	6 cut(s)	65, 197, 668, 680, 722, 767
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	3 cut(s)	271, 375, 734
MalI	GATC	8 cut(s)	163, 402, 519, 608, 675, 748, 818, 843
MboI	GATC	8 cut(s)	161, 400, 517, 606, 673, 746, 816, 841
MboII	GAAGA	6 cut(s)	29, 194, 395, 472, 668, 697
MflI	RGATCY	2 cut(s)	161, 746
MhlI	GDGCHC	2 cut(s)	217, 632
MluCI	AATT	3 cut(s)	108, 439, 782
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	7 cut(s)	33, 64, 201, 204, 529, 749, 770
Mph1103I	ATGCAT	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	96, 357
MvaI	CCWGG	2 cut(s)	96, 357
MwoI	GCNNNNNNNGC	1 cut(s)	627
NdeII	GATC	8 cut(s)	161, 400, 517, 606, 673, 746, 816, 841
NheI	GCTAGC	1 cut(s)	721
NlaIII	CATG	3 cut(s)	117, 401, 531
NsiI	ATGCAT	1 cut(s)	119
OliI	CACNNNNGTG	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	759
PfeI	GAWTC	2 cut(s)	328, 794
PfoI	TCCNGGA	2 cut(s)	94, 355
PkrI	GCNGC	3 cut(s)	132, 395, 549
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
Ppu21I	YACGTR	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	94, 355
PspGI	CCWGG	2 cut(s)	94, 355
PspPI	GGNCC	2 cut(s)	531, 545
PstI	CTGCAG	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	161, 746
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	125
SatI	GCNGC	3 cut(s)	131, 394, 548
Sau3AI	GATC	8 cut(s)	161, 400, 517, 606, 673, 746, 816, 841
Sau96I	GGNCC	2 cut(s)	531, 545
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	2 cut(s)	96, 357
SduI	GDGCHC	2 cut(s)	217, 632
SfaNI	GCATC	4 cut(s)	89, 126, 361, 551
SfcI	CTRYAG	3 cut(s)	77, 414, 845
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	625, 761
SmoI	CTYRAG	2 cut(s)	625, 761
Sse9I	AATT	3 cut(s)	108, 439, 782
SseBI	AGGCCT	1 cut(s)	759
SsiI	CCGC	1 cut(s)	548
SspMI	CTAG	6 cut(s)	65, 197, 668, 680, 722, 767
StuI	AGGCCT	1 cut(s)	759
StyD4I	CCNGG	2 cut(s)	94, 355
TaaI	ACNGT	3 cut(s)	127, 139, 556
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	3 cut(s)	524, 605, 672
TasI	AATT	3 cut(s)	108, 439, 782
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	2 cut(s)	328, 794
TscAI	CASTG	4 cut(s)	90, 144, 429, 832
TseI	GCWGC	2 cut(s)	130, 393
TspDTI	ATGAA	3 cut(s)	473, 479, 766
TspRI	CASTG	4 cut(s)	90, 144, 429, 832
VneI	GTGCAC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	782
XbaI	TCTAGA	1 cut(s)	679
XspI	CTAG	6 cut(s)	65, 197, 668, 680, 722, 767
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.