Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003841

Physical Location & Seq

Genomic Coordinates Forward (+)

42398422 .. 42399219

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0340700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCCAGAAAGTATGTTATTTTTGGTGGTGGACATGCAGAGGGTATAGTGCAAGAATACTCGGAGGGCCTGCACTCTGGAGGTTTGTTCTTCTTCTGTATGATGATTCTGATAACCCTCTCGGTCATACCATTTGCAATATTTGCTTATGGTACTTCATCTCGCAACAAGAAAAGACGTGGTTCAGATGGAGGCGGCGGGGATGGTCCAGATGGTGACGGTGGGGATGGTGGCTATGGAGATGGTCAAGATGGAGGTGGCGGCCATCACACAGGTGGTGGACATGATGTAGGTGGTGCACATCATGGCGGCGGCGGGCATCACCATGTCGGCGCACATCATGGCGGCGGCGGACATCACCATGTAGGCGGTGGACATCACGGGGGCGGTGTACATCATCATGTAGGCGGTGGACATCACGGGGGCGGTGGACATCACCACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0008887 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009941 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031967 GO:0031975 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00260 ko00561 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00561 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

PRK

Protein Analysis

148

Amino Acids

14.65

Weight (kDa)

6.66

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380
fragaria_vesca	FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840
malus_domestica	MD17G1198400.v1.1
prunus_persica	Prupe.3G075100_v2.0.a1
pyrus_communis	pycom09g13320 pycom17g20320
rosa_chinensis	RchiOBHm_Chr2g0137281
rosa_laevigata	RLG00000019647
rosa_multiflora	Rmu_sc0000894.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107230 Rroxscaffold_2G00142010 Rroxscaffold_3G00228320 Rroxscaffold_5G00336080 Rroxscaffold_5G00336090
rosa_rugosa	Rorug02G0340700
rosa_samantha	Rh2AG389000 Rh2BG396800 Rh2CG376500 Rh2DG411800
rosa_wichuraiana	Rw2G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	262
AfaI	GTAC	2 cut(s)	154, 393
AflIII	ACRYGT	1 cut(s)	441
AjiI	CACGTC	1 cut(s)	179
AleI	CACNNNNGTG	1 cut(s)	273
Alw21I	GWGCWC	1 cut(s)	301
Alw44I	GTGCAC	1 cut(s)	297
AoxI	GGCC	2 cut(s)	67, 262
ApaLI	GTGCAC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	67, 206
AsuHPI	GGTGA	4 cut(s)	227, 314, 350, 428
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	301
BccI	CCATC	7 cut(s)	182, 197, 206, 221, 236, 245, 273
BisI	GCNGC	6 cut(s)	196, 262, 310, 313, 346, 349
BlsI	GCNGC	6 cut(s)	197, 263, 311, 314, 347, 350
Bme18I	GGWCC	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	67, 206
BmsI	GCATC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	208, 232
BseSI	GKGCMC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	69, 264
BsiHKAI	GWGCWC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	69, 264
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp1407I	TGTACA	1 cut(s)	391
BspANI	GGCC	2 cut(s)	69, 264
BsrGI	TGTACA	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	221
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	71, 317
BstF5I	GGATG	2 cut(s)	208, 232
BstHHI	GCGC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	2 cut(s)	38, 445
BstSLI	GKGCMC	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	69, 264
BtrI	CACGTC	1 cut(s)	179
BtsCI	GGATG	2 cut(s)	208, 232
Cac8I	GCNNGC	2 cut(s)	71, 317
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	67, 206
Csp6I	GTAC	2 cut(s)	153, 392
CviAII	CATG	8 cut(s)	35, 284, 305, 326, 341, 362, 401, 442
CviJI	RGCY	3 cut(s)	69, 234, 264
CviKI_1	RGCY	3 cut(s)	69, 234, 264
CviQI	GTAC	2 cut(s)	153, 392
EaeI	YGGCCR	1 cut(s)	262
EciI	GGCGGA	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	67
FaeI	CATG	8 cut(s)	38, 287, 308, 329, 344, 365, 404, 445
FatI	CATG	8 cut(s)	34, 283, 304, 325, 340, 361, 400, 441
FauI	CCCGC	2 cut(s)	191, 308
Fnu4HI	GCNGC	6 cut(s)	196, 262, 310, 313, 346, 349
FokI	GGATG	2 cut(s)	215, 239
Fsp4HI	GCNGC	6 cut(s)	196, 262, 310, 313, 346, 349
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	6 cut(s)	196, 262, 310, 313, 346, 349
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	69, 264
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	8 cut(s)	38, 287, 308, 329, 344, 365, 404, 445
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	1 cut(s)	106
HphI	GGTGA	4 cut(s)	227, 314, 350, 428
Hpy166II	GTNNAC	7 cut(s)	32, 281, 299, 374, 392, 413, 431
Hpy188I	TCNGA	3 cut(s)	64, 111, 187
Hpy188III	TCNNGA	4 cut(s)	6, 78, 209, 248
Hpy8I	GTNNAC	7 cut(s)	32, 281, 299, 374, 392, 413, 431
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	5 cut(s)	38, 52, 73, 137, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	8 cut(s)	38, 287, 308, 329, 344, 365, 404, 445
HspAI	GCGC	1 cut(s)	333
LpnPI	CCDG	5 cut(s)	19, 63, 83, 222, 258
LweI	GCATC	1 cut(s)	328
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	215
MboII	GAAGA	2 cut(s)	82, 85
MhlI	GDGCHC	1 cut(s)	301
MnlI	CCTC	6 cut(s)	34, 58, 74, 128, 185, 248
MslI	CAYNNNNRTG	4 cut(s)	273, 324, 360, 399
MwoI	GCNNNNNNNGC	1 cut(s)	143
NlaIII	CATG	8 cut(s)	38, 287, 308, 329, 344, 365, 404, 445
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	2 cut(s)	38, 445
OliI	CACNNNNGTG	1 cut(s)	273
PciI	ACATGT	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	6 cut(s)	197, 263, 311, 314, 347, 350
PscI	ACATGT	1 cut(s)	441
PspPI	GGNCC	2 cut(s)	67, 206
RsaI	GTAC	2 cut(s)	154, 393
RsaNI	GTAC	2 cut(s)	153, 392
RseI	CAYNNNNRTG	4 cut(s)	273, 324, 360, 399
SatI	GCNGC	6 cut(s)	196, 262, 310, 313, 346, 349
Sau96I	GGNCC	2 cut(s)	67, 206
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	5 cut(s)	85, 181, 259, 277, 295
SfaNI	GCATC	1 cut(s)	328
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	4 cut(s)	273, 324, 360, 399
SspI	AATATT	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	181
TaqII	GACCGA	1 cut(s)	112
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	6 cut(s)	198, 264, 312, 315, 348, 351
TfiI	GAWTC	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	147
VneI	GTGCAC	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	206
XceI	RCATGY	2 cut(s)	38, 445
XcmI	CCANNNNNNNNNTGG	2 cut(s)	272, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.