Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003841

Physical Location & Seq

Genomic Coordinates Forward (+)

3803299 .. 3804542

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAACAAACAGACCAAACTCATCATCCAAGCTCTCTTCAATGCCAACCCACCTCTCAAAGTCTAGGACTCTTACTGCAGGCACTGGATGTTCCTAGATGCAAGACAATTCCATGCATCACAACGGTGCTGCTGACAGTGAATGTGATATCTCAGCACAGATCCTTGTACAAAGATGGAGAAGACATACCTCCTCTAGTGATTGGGTTTAGTGCACCACAAGGTTGTGGAAAGACTACACTTGTCTTTGCTCTTGATTATCTTTTCAAAGTAACTGGCAGGAAGTCTGCCACAATATCCATTGATGACTTTTATTTGACAGCTGAGAATCAGGCTAAACTAAGAGAAGCGCATCCAGGAAATGCACTTTTAGAGTTACGTGAAAATGCTGGTGTAATACCCGAAAAATCCGAATTAATTCCGGGGATTTTTAGAATTGATTTCGAAGTATTAGGAATACAAAACAAAAACAAAAAGAACCCAGATAATGCTTTTATCACAACCATTCTCCCTACACTGAGTGCGCTCGGTGTCAAAGATGATGATTTATTAATGATGGTACCCAATGCCGTGTCTAGTGCTTCCAGCAATGCACTGAGCTTCAATCCAGATGGGTCTGCTGCAAATCCACTAGCTTTCCAGCAGCAGATTAGGAATGATTCTAATGTGATAGCACAGTTGTTTCGAGTGATCCCGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0008887 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009941 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031967 GO:0031975 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00260 ko00561 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00561 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

PRK

Protein Analysis

233

Amino Acids

25.35

Weight (kDa)

5.55

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380
fragaria_vesca	FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840
malus_domestica	MD17G1198400.v1.1
prunus_persica	Prupe.3G075100_v2.0.a1
pyrus_communis	pycom09g13320 pycom17g20320
rosa_chinensis	RchiOBHm_Chr2g0137281
rosa_laevigata	RLG00000019647
rosa_multiflora	Rmu_sc0000894.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107230 Rroxscaffold_2G00142010 Rroxscaffold_3G00228320 Rroxscaffold_5G00336080 Rroxscaffold_5G00336090
rosa_rugosa	Rorug02G0340700
rosa_samantha	Rh2AG389000 Rh2BG396800 Rh2CG376500 Rh2DG411800
rosa_wichuraiana	Rw2G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	559
AccB1I	GGYRCC	1 cut(s)	559
AclWI	GGATC	2 cut(s)	156, 685
AdeI	CACNNNGTG	1 cut(s)	521
AfaI	GTAC	2 cut(s)	170, 561
AgsI	TTSAA	3 cut(s)	41, 268, 604
AjnI	CCWGG	1 cut(s)	355
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	4 cut(s)	33, 323, 600, 635
AluI	AGCT	4 cut(s)	33, 323, 600, 635
Alw21I	GWGCWC	1 cut(s)	217
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	2 cut(s)	156, 685
AlwNI	CAGNNNCTG	1 cut(s)	85
ApaLI	GTGCAC	1 cut(s)	213
ApeKI	GCWGC	3 cut(s)	130, 620, 643
AseI	ATTAAT	2 cut(s)	416, 551
Asp700I	GAANNNNTTC	1 cut(s)	417
Asp718I	GGTACC	1 cut(s)	559
AspLEI	GCGC	2 cut(s)	352, 526
AsuC2I	CCSGG	1 cut(s)	423
AsuII	TTCGAA	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	3 cut(s)	117, 607, 655
BccI	CCATC	3 cut(s)	170, 550, 605
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	423
BfaI	CTAG	5 cut(s)	65, 96, 197, 576, 632
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	3 cut(s)	131, 621, 644
BlsI	GCNGC	3 cut(s)	132, 622, 645
Bme1390I	CCNGG	2 cut(s)	357, 423
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	2 cut(s)	357, 423
BmsI	GCATC	3 cut(s)	89, 126, 361
BpiI	GAAGAC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	444
BpuMI	CCSGG	1 cut(s)	423
BsaAI	YACGTR	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	422
Bse1I	ACTGG	2 cut(s)	90, 280
Bse3DI	GCAATG	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	3 cut(s)	25, 94, 352
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	4 cut(s)	167, 315, 509, 587
BseNI	ACTGG	2 cut(s)	90, 280
BseRI	GAGGAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	3 cut(s)	117, 607, 655
BshNI	GGYRCC	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	161, 690
BspCNI	CTCAG	4 cut(s)	166, 316, 510, 588
BspLI	GGNNCC	1 cut(s)	561
BspMAI	CTGCAG	1 cut(s)	81
BspPI	GGATC	2 cut(s)	156, 685
BspT104I	TTCGAA	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	559
BsrDI	GCAATG	1 cut(s)	595
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	90, 280
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	2 cut(s)	161, 690
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	127, 139, 678
Bst6I	CTCTTC	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	380
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	5 cut(s)	153, 324, 341, 518, 596
BstF5I	GGATG	3 cut(s)	25, 94, 352
BstHHI	GCGC	2 cut(s)	352, 526
BstKTI	GATC	2 cut(s)	164, 693
BstMBI	GATC	2 cut(s)	161, 690
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	2 cut(s)	355, 421
BstSFI	CTRYAG	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	117, 607, 655
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BtsCI	GGATG	3 cut(s)	25, 94, 352
BtsIMutI	CAGTG	4 cut(s)	83, 144, 515, 593
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	85
CfoI	GCGC	2 cut(s)	352, 526
Csp6I	GTAC	2 cut(s)	169, 560
CviAII	CATG	1 cut(s)	114
CviJI	RGCY	5 cut(s)	33, 323, 335, 600, 635
CviKI_1	RGCY	5 cut(s)	33, 323, 335, 600, 635
CviQI	GTAC	2 cut(s)	169, 560
DdeI	CTNAG	5 cut(s)	153, 324, 341, 518, 596
DpnI	GATC	2 cut(s)	163, 692
DpnII	GATC	2 cut(s)	161, 690
DraIII	CACNNNGTG	1 cut(s)	521
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	355
EcoRV	GATATC	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	119
FaeI	CATG	1 cut(s)	117
FaiI	YATR	2 cut(s)	115, 188
FatI	CATG	1 cut(s)	113
Fnu4HI	GCNGC	3 cut(s)	131, 621, 644
FokI	GGATG	3 cut(s)	12, 101, 339
Fsp4HI	GCNGC	3 cut(s)	131, 621, 644
FspBI	CTAG	5 cut(s)	65, 96, 197, 576, 632
GlaI	GCGC	2 cut(s)	351, 525
GluI	GCNGC	3 cut(s)	131, 621, 644
HapII	CCGG	1 cut(s)	422
HhaI	GCGC	2 cut(s)	352, 526
Hin1II	CATG	1 cut(s)	117
Hin6I	GCGC	2 cut(s)	350, 524
HinP1I	GCGC	2 cut(s)	350, 524
HinfI	GANTC	3 cut(s)	69, 328, 659
HpaII	CCGG	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	1 cut(s)	412
Hpy188III	TCNNGA	3 cut(s)	254, 608, 694
Hpy8I	GTNNAC	1 cut(s)	215
HpyCH4III	ACNGT	3 cut(s)	127, 139, 678
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	7 cut(s)	79, 102, 117, 215, 365, 593, 623
HpyF3I	CTNAG	5 cut(s)	153, 324, 341, 518, 596
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	1 cut(s)	117
HspAI	GCGC	2 cut(s)	350, 524
KpnI	GGTACC	1 cut(s)	563
Kzo9I	GATC	2 cut(s)	161, 690
Lsp1109I	GCAGC	3 cut(s)	117, 607, 655
LweI	GCATC	3 cut(s)	89, 126, 361
MaeI	CTAG	5 cut(s)	65, 96, 197, 576, 632
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	271, 375
MalI	GATC	2 cut(s)	163, 692
MboI	GATC	2 cut(s)	161, 690
MboII	GAAGA	2 cut(s)	29, 194
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	5 cut(s)	108, 413, 417, 435, 697
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	3 cut(s)	64, 201, 204
Mph1103I	ATGCAT	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	2 cut(s)	416, 551
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	2 cut(s)	357, 423
MvaI	CCWGG	1 cut(s)	357
NciI	CCSGG	1 cut(s)	423
NdeII	GATC	2 cut(s)	161, 690
NlaIII	CATG	1 cut(s)	117
NlaIV	GGNNCC	1 cut(s)	561
NsiI	ATGCAT	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	444
OliI	CACNNNNGTG	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	328, 659
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	132, 622, 645
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
Ppu21I	YACGTR	1 cut(s)	380
PshBI	ATTAAT	2 cut(s)	416, 551
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	561
PstI	CTGCAG	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	2 cut(s)	170, 561
RsaNI	GTAC	2 cut(s)	169, 560
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	416, 551
SatI	GCNGC	3 cut(s)	131, 621, 644
Sau3AI	GATC	2 cut(s)	161, 690
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	2 cut(s)	357, 423
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	8 cut(s)	35, 56, 193, 226, 325, 382, 602, 637
SfaNI	GCATC	3 cut(s)	89, 126, 361
SfcI	CTRYAG	1 cut(s)	77
SfuI	TTCGAA	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	5 cut(s)	108, 413, 417, 435, 697
SspMI	CTAG	5 cut(s)	65, 96, 197, 576, 632
StyD4I	CCNGG	2 cut(s)	355, 421
TaaI	ACNGT	3 cut(s)	127, 139, 678
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	444, 685
TasI	AATT	5 cut(s)	108, 413, 417, 435, 697
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	328, 659
Tru1I	TTAA	2 cut(s)	416, 551
Tru9I	TTAA	2 cut(s)	416, 551
TscAI	CASTG	4 cut(s)	90, 144, 522, 600
TseI	GCWGC	3 cut(s)	130, 620, 643
TspRI	CASTG	4 cut(s)	90, 144, 522, 600
VneI	GTGCAC	1 cut(s)	213
VspI	ATTAAT	2 cut(s)	416, 551
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	5 cut(s)	65, 96, 197, 576, 632
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.