Prupe.3G075100_v2.0.a1

D-glycerate 3-kinase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
5493992 .. 5498691
4700 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G075100.1

Sequence Viewer

Length: 1374 bp
ATGAAAATGGCGGCCTTGAATATCTTATCTCAGCCATGGCCACCTACGCCCCCTCTCTCTGTTTCTAATTGTTATTATTCTTTCTGTAATACTAGTAAGTCCAATAGTAGTAATAAATCACATTCTTTGTCTCATTCTTATCACTTCTCTCTCCTCTCTTCCCTCTATGGATCAAATAGACCATACCCATCATCTAAGCTCTCTGCAATGCCTACCCATTTCTCAAAGTCTGGGATTCTTCTTGCAGGCAGTGGATGTTCCTGGATGCAAGACAATTCTATGCATCACAACAATGCTGCCGGCAGTGAATGTGGGCAGGGCCAATTGTATTCTGTGTTTCCTACACAGCCTGCAGAAGTTTCTTCTGTGCAGGACCTTTTTAACTTTATATGCTCAGGTCCATTGATAAACAAATTGGGTCTGACCCCAGAAGCAGTGGCTGAGTCTGTTGACAAATGGTTGTCCTATGGGTTGCACCTCTGTCGGCTGTTTCAGCTCAATGAATTGTATCTGACGGAGCCTCAAAAAGTTAGGCTTTATCACTACTATATTCCAGTATTTTTTTGGTGTGATGATCAGATTTCTCAGCACAGATCCTTGTACAAAGATGGAGAAGATATACCTCCTCTAGTGATTGGTTTTAGTGCACCACAAGGTTGTGGAAAGACTACACTTGTGTTTGCTCTTAATTATCTATTCCAAATTACGGGCCGGAAGTCTGCCTCAATATCCATTGATGACTTTTATTTGACGGCAGAGGGTCAGGCCAAACTACGAGAAGCAAATCCAGGAAATGCACTTTTAGAGTTACGTGGAAATGCAGGGAGTCATGATCTTACATTCTCTGTTGAAACCCTGTCTGATCTAAGCAAATTGAGTAAAGAAGGTATGAAGATGAAGCTACCCCGATATGATAAGTCCGCTTACAATGGAAAGGGTGACAGGGCTGATCCGTCAACATGGCCAGAGGTTGAAGGGCCACTTACAGTTGTTCTATTTGAAGGTTGGATGCTTGGTTTCAAACCCCTTCCTGTGGAAGTTGTCAAAGCAGTTGATCCGCAGCTGGAGACAGTAAATAAAAATCTTGAAGCTTATTATGATGCATGGTATAAGTTCATCAAAGCATGGATAATTATCAAGATCAAGGATCCGAGCTGTGTGTACCAGTGGCGTTTGCAGGCAGAGATTGCCATGAGAGAGGACGGGAAGCCTGGAATGTCCGATGACGAGGTAAAAGATTTTGTTTCACGGTACTTGCCAGCATACAATGCTTACCTTCCCACCCTTTACTCGGAAGGACCAGAAGGGTCGGACCCAAAGCGCCTCATCGTCATAGAAATTGATGAGGGAAGGAACCCTATCCTTGGGAACTAG

Protein Analysis

458

Amino Acids

51.08

Weight (kDa)

5.97

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 11, 921, 1058
AclWI GGATC 6 cut(s) 178, 588, 944, 1049, 1142, 1155
AcoI YGGCCR 2 cut(s) 38, 962
AfaI GTAC 3 cut(s) 602, 1163, 1253
AfiI CCNNNNNNNGG 4 cut(s) 706, 1033, 1291, 1364
AgsI TTSAA 6 cut(s) 19, 851, 974, 1001, 1021, 1088
AhlI ACTAGT 1 cut(s) 92
AjnI CCWGG 3 cut(s) 260, 787, 1210
AluBI AGCT 6 cut(s) 199, 496, 901, 1063, 1091, 1155
AluI AGCT 6 cut(s) 199, 496, 901, 1063, 1091, 1155
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 2 cut(s) 135, 1061
Alw44I GTGCAC 1 cut(s) 645
AlwI GGATC 6 cut(s) 178, 588, 944, 1049, 1142, 1155
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 7 cut(s) 12, 38, 319, 709, 765, 962, 977
ApaLI GTGCAC 1 cut(s) 645
ApeKI GCWGC 2 cut(s) 296, 1060
AspLEI GCGC 1 cut(s) 1323
AspS9I GGNCC 7 cut(s) 319, 373, 398, 709, 977, 1298, 1312
AsuHPI GGTGA 1 cut(s) 950
AvaII GGWCC 4 cut(s) 373, 398, 1298, 1312
BaeGI GKGCMC 1 cut(s) 649
BalI TGGCCA 2 cut(s) 40, 964
BamHI GGATCC 1 cut(s) 1147
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 2 cut(s) 283, 1072
BccI CCATC 2 cut(s) 196, 602
BceAI ACGGC 1 cut(s) 768
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 3 cut(s) 262, 789, 1212
BclI TGATCA 1 cut(s) 574
BcoDI GTCTC 2 cut(s) 135, 1061
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 3 cut(s) 93, 629, 1372
BfmI CTRYAG 1 cut(s) 351
BfoI RGCGCY 1 cut(s) 1324
BisI GCNGC 3 cut(s) 12, 297, 1061
BlsI GCNGC 3 cut(s) 13, 298, 1062
Bme1390I CCNGG 3 cut(s) 262, 789, 1212
Bme18I GGWCC 4 cut(s) 373, 398, 1298, 1312
BmgT120I GGNCC 7 cut(s) 319, 373, 398, 709, 977, 1298, 1312
BmiI GGNNCC 4 cut(s) 519, 1149, 1314, 1355
BmrFI CCNGG 3 cut(s) 262, 789, 1212
BmsI GCATC 4 cut(s) 255, 292, 999, 1090
BpmI CTGGAG 1 cut(s) 1085
Bpu10I CCTNAGC 1 cut(s) 394
BsaAI YACGTR 1 cut(s) 812
BsaBI GATNNNNATC 1 cut(s) 1133
BsaJI CCNNGG 2 cut(s) 35, 1363
Bsc4I CCNNNNNNNGG 4 cut(s) 706, 1033, 1291, 1364
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 554, 1165
Bse3DI GCAATG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 1133
BseBI CCWGG 3 cut(s) 262, 789, 1212
BseDI CCNNGG 2 cut(s) 35, 1363
BseGI GGATG 3 cut(s) 260, 270, 1014
BseJI GATNNNNATC 1 cut(s) 1133
BseLI CCNNNNNNNGG 4 cut(s) 706, 1033, 1291, 1364
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 4 cut(s) 44, 408, 432, 599
BseNI ACTGG 2 cut(s) 554, 1165
BseRI GAGGAG 2 cut(s) 143, 615
BseSI GKGCMC 1 cut(s) 649
BseXI GCAGC 2 cut(s) 283, 1072
BsgI GTGCAG 1 cut(s) 389
BshFI GGCC 7 cut(s) 14, 40, 321, 711, 767, 964, 979
BsiHKAI GWGCWC 1 cut(s) 649
BsiSI CCGG 2 cut(s) 300, 712
BslI CCNNNNNNNGG 4 cut(s) 706, 1033, 1291, 1364
BsmAI GTCTC 2 cut(s) 135, 1061
BsnI GGCC 7 cut(s) 14, 40, 321, 711, 767, 964, 979
Bsp1286I GDGCHC 1 cut(s) 649
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 9 cut(s) 170, 574, 593, 832, 862, 949, 1054, 1140, 1147
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 3 cut(s) 11, 921, 1058
BspANI GGCC 7 cut(s) 14, 40, 321, 711, 767, 964, 979
BspCNI CTCAG 4 cut(s) 43, 407, 433, 598
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 4 cut(s) 519, 1149, 1314, 1355
BspMAI CTGCAG 1 cut(s) 355
BspPI GGATC 6 cut(s) 178, 588, 944, 1049, 1142, 1155
BsrDI GCAATG 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 299
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 2 cut(s) 554, 1165
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 35, 1363
BssMI GATC 9 cut(s) 170, 574, 593, 832, 862, 949, 1054, 1140, 1147
BssT1I CCWWGG 2 cut(s) 35, 1363
Bst2UI CCWGG 3 cut(s) 262, 789, 1212
Bst4CI ACNGT 3 cut(s) 988, 1072, 1251
Bst6I CTCTTC 1 cut(s) 163
BstAPI GCANNNNNTGC 2 cut(s) 1187, 1268
BstAUI TGTACA 1 cut(s) 600
BstBAI YACGTR 1 cut(s) 812
BstC8I GCNNGC 5 cut(s) 247, 301, 351, 1179, 1260
BstDEI CTNAG 6 cut(s) 30, 195, 394, 441, 585, 866
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 3 cut(s) 260, 270, 1014
BstH2I RGCGCY 1 cut(s) 1324
BstHHI GCGC 1 cut(s) 1323
BstKTI GATC 9 cut(s) 173, 577, 596, 835, 865, 952, 1057, 1143, 1150
BstMAI GTCTC 2 cut(s) 135, 1061
BstMBI GATC 9 cut(s) 170, 574, 593, 832, 862, 949, 1054, 1140, 1147
BstMWI GCNNNNNNNGC 4 cut(s) 46, 493, 1187, 1268
BstNI CCWGG 3 cut(s) 262, 789, 1212
BstSCI CCNGG 3 cut(s) 260, 787, 1210
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 649
BstV1I GCAGC 2 cut(s) 283, 1072
BstX2I RGATCY 2 cut(s) 593, 1147
BstYI RGATCY 2 cut(s) 593, 1147
BsuRI GGCC 7 cut(s) 14, 40, 321, 711, 767, 964, 979
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 3 cut(s) 260, 270, 1014
BtsI GCAGTG 3 cut(s) 256, 310, 441
BtsIMutI CAGTG 4 cut(s) 256, 310, 441, 1172
Cac8I GCNNGC 5 cut(s) 247, 301, 351, 1179, 1260
CaiI CAGNNNCTG 1 cut(s) 440
CciI TCATGA 1 cut(s) 829
CfoI GCGC 1 cut(s) 1323
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 7 cut(s) 319, 373, 398, 709, 977, 1298, 1312
Csp6I GTAC 3 cut(s) 601, 1162, 1252
CviAII CATG 6 cut(s) 36, 830, 960, 1104, 1125, 1192
CviQI GTAC 3 cut(s) 601, 1162, 1252
DdeI CTNAG 6 cut(s) 30, 195, 394, 441, 585, 866
DpnI GATC 9 cut(s) 172, 576, 595, 834, 864, 951, 1056, 1142, 1149
DpnII GATC 9 cut(s) 170, 574, 593, 832, 862, 949, 1054, 1140, 1147
EaeI YGGCCR 2 cut(s) 38, 962
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco130I CCWWGG 2 cut(s) 35, 1363
Eco47I GGWCC 4 cut(s) 373, 398, 1298, 1312
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 3 cut(s) 260, 787, 1210
EcoT14I CCWWGG 2 cut(s) 35, 1363
EcoT22I ATGCAT 2 cut(s) 285, 1105
ErhI CCWWGG 2 cut(s) 35, 1363
FaeI CATG 6 cut(s) 39, 833, 963, 1107, 1128, 1195
FalI AAGNNNNNCTT 4 cut(s) 519, 551, 966, 998
FatI CATG 6 cut(s) 35, 829, 959, 1103, 1124, 1191
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 3 cut(s) 12, 297, 1061
FokI GGATG 3 cut(s) 267, 277, 1021
Fsp4HI GCNGC 3 cut(s) 12, 297, 1061
FspBI CTAG 3 cut(s) 93, 629, 1372
GlaI GCGC 1 cut(s) 1322
GluI GCNGC 3 cut(s) 12, 297, 1061
GsuI CTGGAG 1 cut(s) 1085
HaeII RGCGCY 1 cut(s) 1324
HaeIII GGCC 7 cut(s) 14, 40, 321, 711, 767, 964, 979
HapII CCGG 2 cut(s) 300, 712
HhaI GCGC 1 cut(s) 1323
Hin1II CATG 6 cut(s) 39, 833, 963, 1107, 1128, 1195
Hin6I GCGC 1 cut(s) 1321
HinP1I GCGC 1 cut(s) 1321
HincII GTYRAC 2 cut(s) 451, 957
HindII GTYRAC 2 cut(s) 451, 957
HindIII AAGCTT 1 cut(s) 1089
HinfI GANTC 3 cut(s) 235, 443, 826
HpaII CCGG 2 cut(s) 300, 712
HphI GGTGA 1 cut(s) 950
Hpy166II GTNNAC 4 cut(s) 451, 647, 957, 1162
Hpy188I TCNGA 8 cut(s) 423, 513, 579, 862, 1152, 1222, 1294, 1312
Hpy188III TCNNGA 3 cut(s) 830, 1085, 1138
Hpy8I GTNNAC 4 cut(s) 451, 647, 957, 1162
HpyAV CCTTC 8 cut(s) 878, 968, 995, 1037, 1286, 1289, 1298, 1344
HpyCH4III ACNGT 3 cut(s) 988, 1072, 1251
HpyCH4IV ACGT 1 cut(s) 811
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 493, 1187, 1268
HpyF3I CTNAG 6 cut(s) 30, 195, 394, 441, 585, 866
HpySE526I ACGT 1 cut(s) 811
Hsp92II CATG 6 cut(s) 39, 833, 963, 1107, 1128, 1195
HspAI GCGC 1 cut(s) 1321
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 9 cut(s) 170, 574, 593, 832, 862, 949, 1054, 1140, 1147
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 2 cut(s) 283, 1072
LweI GCATC 4 cut(s) 255, 292, 999, 1090
MaeI CTAG 3 cut(s) 93, 629, 1372
MaeII ACGT 1 cut(s) 811
MaeIII GTNAC 2 cut(s) 807, 938
MalI GATC 9 cut(s) 172, 576, 595, 834, 864, 951, 1056, 1142, 1149
MboI GATC 9 cut(s) 170, 574, 593, 832, 862, 949, 1054, 1140, 1147
MboII GAAGA 5 cut(s) 150, 230, 354, 626, 904
MfeI CAATTG 1 cut(s) 323
MflI RGATCY 2 cut(s) 593, 1147
MhlI GDGCHC 1 cut(s) 649
MlsI TGGCCA 2 cut(s) 40, 964
MluNI TGGCCA 2 cut(s) 40, 964
MlyI GAGTC 2 cut(s) 452, 835
MmeI TCCRAC 2 cut(s) 986, 1290
Mox20I TGGCCA 2 cut(s) 40, 964
Mph1103I ATGCAT 2 cut(s) 285, 1105
MroNI GCCGGC 1 cut(s) 299
MscI TGGCCA 2 cut(s) 40, 964
MseI TTAA 2 cut(s) 381, 687
MslI CAYNNNNRTG 1 cut(s) 291
Msp20I TGGCCA 2 cut(s) 40, 964
MspA1I CMGCKG 1 cut(s) 1063
MspI CCGG 2 cut(s) 300, 712
MspR9I CCNGG 3 cut(s) 262, 789, 1212
MunI CAATTG 1 cut(s) 323
MvaI CCWGG 3 cut(s) 262, 789, 1212
MwoI GCNNNNNNNGC 4 cut(s) 46, 493, 1187, 1268
NaeI GCCGGC 1 cut(s) 301
NcoI CCATGG 1 cut(s) 35
NdeII GATC 9 cut(s) 170, 574, 593, 832, 862, 949, 1054, 1140, 1147
NgoMIV GCCGGC 1 cut(s) 299
NlaIII CATG 6 cut(s) 39, 833, 963, 1107, 1128, 1195
NlaIV GGNNCC 4 cut(s) 519, 1149, 1314, 1355
NmuCI GTSAC 1 cut(s) 938
NsiI ATGCAT 2 cut(s) 285, 1105
PagI TCATGA 1 cut(s) 829
PdiI GCCGGC 1 cut(s) 301
PfeI GAWTC 1 cut(s) 235
PfoI TCCNGGA 2 cut(s) 260, 787
PkrI GCNGC 3 cut(s) 13, 298, 1062
PleI GAGTC 2 cut(s) 451, 834
PpsI GAGTC 2 cut(s) 451, 834
Ppu21I YACGTR 1 cut(s) 812
PpuMI RGGWCCY 1 cut(s) 373
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 3 cut(s) 260, 787, 1210
PspGI CCWGG 3 cut(s) 260, 787, 1210
PspN4I GGNNCC 4 cut(s) 519, 1149, 1314, 1355
PspPI GGNCC 7 cut(s) 319, 373, 398, 709, 977, 1298, 1312
PspPPI RGGWCCY 1 cut(s) 373
PstI CTGCAG 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 2 cut(s) 593, 1147
PvuII CAGCTG 1 cut(s) 1063
RsaI GTAC 3 cut(s) 602, 1163, 1253
RsaNI GTAC 3 cut(s) 601, 1162, 1252
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 2 cut(s) 381, 687
SatI GCNGC 3 cut(s) 12, 297, 1061
Sau3AI GATC 9 cut(s) 170, 574, 593, 832, 862, 949, 1054, 1140, 1147
Sau96I GGNCC 7 cut(s) 319, 373, 398, 709, 977, 1298, 1312
SchI GAGTC 2 cut(s) 452, 835
ScrFI CCNGG 3 cut(s) 262, 789, 1212
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 4 cut(s) 255, 292, 999, 1090
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 4 cut(s) 373, 398, 1298, 1312
SmiMI CAYNNNNRTG 1 cut(s) 291
SpeI ACTAGT 1 cut(s) 92
SsiI CCGC 3 cut(s) 11, 921, 1058
SspMI CTAG 3 cut(s) 93, 629, 1372
StyD4I CCNGG 3 cut(s) 260, 787, 1210
StyI CCWWGG 2 cut(s) 35, 1363
TaaI ACNGT 3 cut(s) 988, 1072, 1251
TaiI ACGT 1 cut(s) 814
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 2 cut(s) 381, 687
Tru9I TTAA 2 cut(s) 381, 687
TscAI CASTG 4 cut(s) 256, 310, 441, 1172
TseFI GTSAC 1 cut(s) 938
TseI GCWGC 2 cut(s) 296, 1060
Tsp45I GTSAC 1 cut(s) 938
TspDTI ATGAA 5 cut(s) 17, 516, 905, 911, 1105
TspGWI ACGGA 2 cut(s) 530, 942
TspRI CASTG 4 cut(s) 256, 310, 441, 1172
VneI GTGCAC 1 cut(s) 645
VpaK11BI GGWCC 4 cut(s) 373, 398, 1298, 1312
XcmI CCANNNNNNNNNTGG 1 cut(s) 561
XspI CTAG 3 cut(s) 93, 629, 1372
Zsp2I ATGCAT 2 cut(s) 285, 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.