Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000894.1

Orthogroup ID

OG0003841

Physical Location & Seq

Genomic Coordinates Reverse (-)

1165 .. 3492

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000894.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgatgtggacagattcatggatgatcattacctccttttgtttatcagggactcttactgcaggcactggatgttcctggatgcaagacaattccatgcatcacaatggtcctgccaacagtgaatgtggtgagggtccattgcattctgcgtttccagcaaaggctgctgagatttcatctatagaggacctttatgagtttataagttcaggtccattgatgaacaaactgggtttagccccagaagctgtggccgagtccattgacaagtggttggcatatggtttacacctgtgtcggctatttcagctcaatgaattggacctctcagttcctcagaaagttaggatatatcactattatcttccagtctttttttggtgtgaagatcagatatctcagcacagatccttgtacaaagatggagaagatatacctcctctagtgattgggttcagtgcaccacaaggttgtggaaagactacacttgtctttgctcttgattatcttttcaaagtaactggcaggaagtctgccacaatatccattgatgacttttatttgacagctgagaatcaggctaaactaagagaagcgcatccaggaaatgcacttttagagttacgtggaaatgctggcagccatgatcttccattctctgtggagacactgactgctctaagcaatttgagtaaagaaggtatgaagatgaagctaccccgatatgacaagtctgcttacaatggaaagggggacagagctgatccttcgacatggcccgaggtggaagggccgcttactgctcttctatttgaaggttggatgcttggcttcaaacccgttcctgtggaagttgtcaaagcagtcaatccacagctagagacagtaaataaaaatcttgaagcttattatgatgcatgggacaagttcgtcaaagcatggatagtcatcaaaatcaaagatcccagctgtgtctaccagtggcgtctgcaggcagagattgccatgagagaggcaggaaacgctggaatgtccgatgatgaggtaaaggattttgtttcacggtacttgccagcatacaatgcttaccttcctaccctttatgccgaaggaccaaaagggtcagatccaaagcacctcatctttgtagaaattgatgagggaaggaatcccatccttggtaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0008887 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009941 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031967 GO:0031975 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00260 ko00561 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00561 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

PRK

Protein Analysis

396

Amino Acids

44.18

Weight (kDa)

5.15

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380
fragaria_vesca	FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840
malus_domestica	MD17G1198400.v1.1
prunus_persica	Prupe.3G075100_v2.0.a1
pyrus_communis	pycom09g13320 pycom17g20320
rosa_chinensis	RchiOBHm_Chr2g0137281
rosa_laevigata	RLG00000019647
rosa_multiflora	Rmu_sc0000894.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107230 Rroxscaffold_2G00142010 Rroxscaffold_3G00228320 Rroxscaffold_5G00336080 Rroxscaffold_5G00336090
rosa_rugosa	Rorug02G0340700
rosa_samantha	Rh2AG389000 Rh2BG396800 Rh2CG376500 Rh2DG411800
rosa_wichuraiana	Rw2G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AasI	GACNNNNNNGTC	1 cut(s)	932
AccI	GTMKAC	1 cut(s)	978
AciI	CCGC	1 cut(s)	797
AclWI	GGATC	4 cut(s)	405, 761, 959, 1124
AcoI	YGGCCR	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	988
AfaI	GTAC	2 cut(s)	419, 1070
AfiI	CCNNNNNNNGG	1 cut(s)	1181
AgsI	TTSAA	4 cut(s)	517, 818, 838, 905
AjnI	CCWGG	2 cut(s)	77, 604
AluBI	AGCT	8 cut(s)	251, 313, 572, 718, 764, 880, 908, 972
AluI	AGCT	8 cut(s)	251, 313, 572, 718, 764, 880, 908, 972
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	2 cut(s)	662, 878
Alw44I	GTGCAC	1 cut(s)	462
AlwI	GGATC	4 cut(s)	405, 761, 959, 1124
AlwNI	CAGNNNCTG	2 cut(s)	68, 251
Ama87I	CYCGRG	1 cut(s)	782
AoxI	GGCC	3 cut(s)	255, 779, 794
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	2 cut(s)	167, 642
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	8 cut(s)	110, 137, 190, 215, 325, 780, 794, 1115
AsuHPI	GGTGA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	782
AvaII	GGWCC	6 cut(s)	110, 137, 190, 215, 325, 1115
BaeGI	GKGCMC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	154, 654
BccI	CCATC	2 cut(s)	419, 1184
BciT130I	CCWGG	2 cut(s)	79, 606
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	662, 878
BfaI	CTAG	3 cut(s)	446, 881, 1189
BfmI	CTRYAG	3 cut(s)	60, 183, 992
BisI	GCNGC	3 cut(s)	168, 643, 797
BlsI	GCNGC	3 cut(s)	169, 644, 798
Bme1390I	CCNGG	2 cut(s)	79, 606
Bme18I	GGWCC	6 cut(s)	110, 137, 190, 215, 325, 1115
BmeT110I	CYCGRG	1 cut(s)	782
BmgT120I	GGNCC	8 cut(s)	110, 137, 190, 215, 325, 780, 794, 1115
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	2 cut(s)	79, 606
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	5 cut(s)	72, 109, 610, 816, 907
BmuI	ACTGGG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	629
BsaBI	GATNNNNATC	1 cut(s)	950
BsaHI	GRCGYC	1 cut(s)	988
BsaJI	CCNNGG	2 cut(s)	783, 1180
Bsc4I	CCNNNNNNNGG	1 cut(s)	1181
Bse1I	ACTGG	5 cut(s)	73, 237, 371, 529, 982
Bse3DI	GCAATG	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	950
BseBI	CCWGG	2 cut(s)	79, 606
BseDI	CCNNGG	2 cut(s)	783, 1180
BseGI	GGATG	6 cut(s)	27, 77, 87, 601, 831, 1176
BseJI	GATNNNNATC	1 cut(s)	950
BseLI	CCNNNNNNNGG	1 cut(s)	1181
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	5 cut(s)	162, 345, 353, 416, 564
BseNI	ACTGG	5 cut(s)	73, 237, 371, 529, 982
BseRI	GAGGAG	1 cut(s)	432
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	2 cut(s)	154, 654
BseYI	CCCAGC	1 cut(s)	968
BshFI	GGCC	3 cut(s)	257, 781, 796
BsiHKAI	GWGCWC	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	782
BslFI	GGGAC	3 cut(s)	64, 770, 938
BslI	CCNNNNNNNGG	1 cut(s)	1181
BsmAI	GTCTC	2 cut(s)	662, 878
BsmFI	GGGAC	3 cut(s)	64, 770, 938
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	3 cut(s)	257, 781, 796
BsoBI	CYCGRG	1 cut(s)	782
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	7 cut(s)	24, 391, 410, 649, 766, 964, 1129
BspACI	CCGC	1 cut(s)	797
BspANI	GGCC	3 cut(s)	257, 781, 796
BspCNI	CTCAG	5 cut(s)	163, 344, 352, 415, 565
BspLI	GGNNCC	1 cut(s)	138
BspMAI	CTGCAG	2 cut(s)	64, 996
BspPI	GGATC	4 cut(s)	405, 761, 959, 1124
BspQI	GCTCTTC	1 cut(s)	813
BsrDI	GCAATG	1 cut(s)	140
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	5 cut(s)	73, 237, 371, 529, 982
BssECI	CCNNGG	2 cut(s)	783, 1180
BssMI	GATC	7 cut(s)	24, 391, 410, 649, 766, 964, 1129
BssNI	GRCGYC	1 cut(s)	988
BssT1I	CCWWGG	1 cut(s)	1180
Bst2UI	CCWGG	2 cut(s)	79, 606
Bst4CI	ACNGT	3 cut(s)	122, 889, 1068
Bst6I	CTCTTC	1 cut(s)	813
BstACI	GRCGYC	1 cut(s)	988
BstAPI	GCANNNNNTGC	3 cut(s)	167, 1004, 1085
BstAUI	TGTACA	1 cut(s)	417
BstBAI	YACGTR	1 cut(s)	629
BstC8I	GCNNGC	4 cut(s)	64, 640, 996, 1077
BstDEI	CTNAG	7 cut(s)	171, 331, 339, 402, 573, 590, 683
BstF5I	GGATG	6 cut(s)	27, 77, 87, 601, 831, 1176
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	7 cut(s)	27, 394, 413, 652, 769, 967, 1132
BstMAI	GTCTC	2 cut(s)	662, 878
BstMBI	GATC	7 cut(s)	24, 391, 410, 649, 766, 964, 1129
BstMWI	GCNNNNNNNGC	7 cut(s)	158, 167, 248, 310, 1004, 1025, 1085
BstNI	CCWGG	2 cut(s)	79, 606
BstSCI	CCNGG	2 cut(s)	77, 604
BstSFI	CTRYAG	3 cut(s)	60, 183, 992
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	154, 654
BstX2I	RGATCY	3 cut(s)	410, 964, 1129
BstYI	RGATCY	3 cut(s)	410, 964, 1129
BsuRI	GGCC	3 cut(s)	257, 781, 796
BtsCI	GGATG	6 cut(s)	27, 77, 87, 601, 831, 1176
BtsIMutI	CAGTG	5 cut(s)	66, 127, 466, 671, 989
Cac8I	GCNNGC	4 cut(s)	64, 640, 996, 1077
CaiI	CAGNNNCTG	2 cut(s)	68, 251
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	8 cut(s)	110, 137, 190, 215, 325, 780, 794, 1115
CseI	GACGC	1 cut(s)	977
Csp6I	GTAC	2 cut(s)	418, 1069
CviAII	CATG	7 cut(s)	18, 97, 647, 777, 921, 942, 1009
CviQI	GTAC	2 cut(s)	418, 1069
DdeI	CTNAG	7 cut(s)	171, 331, 339, 402, 573, 590, 683
DpnI	GATC	7 cut(s)	26, 393, 412, 651, 768, 966, 1131
DpnII	GATC	7 cut(s)	24, 391, 410, 649, 766, 964, 1129
DrdI	GACNNNNNNGTC	1 cut(s)	932
DseDI	GACNNNNNNGTC	1 cut(s)	932
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
Eco130I	CCWWGG	1 cut(s)	1180
Eco32I	GATATC	1 cut(s)	399
Eco47I	GGWCC	6 cut(s)	110, 137, 190, 215, 325, 1115
Eco88I	CYCGRG	1 cut(s)	782
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	77, 604
EcoRV	GATATC	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	1180
EcoT22I	ATGCAT	2 cut(s)	102, 922
ErhI	CCWWGG	1 cut(s)	1180
FaeI	CATG	7 cut(s)	21, 100, 650, 780, 924, 945, 1012
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FaqI	GGGAC	3 cut(s)	64, 770, 938
FatI	CATG	7 cut(s)	17, 96, 646, 776, 920, 941, 1008
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	978
Fnu4HI	GCNGC	3 cut(s)	168, 643, 797
FokI	GGATG	6 cut(s)	34, 84, 94, 588, 838, 1163
Fsp4HI	GCNGC	3 cut(s)	168, 643, 797
FspBI	CTAG	3 cut(s)	446, 881, 1189
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	3 cut(s)	168, 643, 797
GsaI	CCCAGC	1 cut(s)	972
HaeIII	GGCC	3 cut(s)	257, 781, 796
HgaI	GACGC	1 cut(s)	977
HhaI	GCGC	1 cut(s)	601
Hin1I	GRCGYC	1 cut(s)	988
Hin1II	CATG	7 cut(s)	21, 100, 650, 780, 924, 945, 1012
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HindIII	AAGCTT	1 cut(s)	906
HinfI	GANTC	5 cut(s)	14, 52, 260, 577, 1171
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	4 cut(s)	9, 290, 464, 979
Hpy188I	TCNGA	4 cut(s)	342, 396, 1039, 1129
Hpy188III	TCNNGA	2 cut(s)	503, 902
Hpy8I	GTNNAC	4 cut(s)	9, 290, 464, 979
HpyAV	CCTTC	7 cut(s)	695, 780, 785, 812, 1103, 1106, 1161
HpyCH4III	ACNGT	3 cut(s)	122, 889, 1068
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	8 cut(s)	62, 85, 100, 145, 464, 614, 920, 994
HpyF10VI	GCNNNNNNNGC	7 cut(s)	158, 167, 248, 310, 1004, 1025, 1085
HpyF3I	CTNAG	7 cut(s)	171, 331, 339, 402, 573, 590, 683
HpySE526I	ACGT	1 cut(s)	628
Hsp92I	GRCGYC	1 cut(s)	988
Hsp92II	CATG	7 cut(s)	21, 100, 650, 780, 924, 945, 1012
HspAI	GCGC	1 cut(s)	599
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	7 cut(s)	24, 391, 410, 649, 766, 964, 1129
LguI	GCTCTTC	1 cut(s)	813
Lsp1109I	GCAGC	2 cut(s)	154, 654
LweI	GCATC	5 cut(s)	72, 109, 610, 816, 907
MaeI	CTAG	3 cut(s)	446, 881, 1189
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	3 cut(s)	520, 624, 1184
MalI	GATC	7 cut(s)	26, 393, 412, 651, 768, 966, 1131
MboI	GATC	7 cut(s)	24, 391, 410, 649, 766, 964, 1129
MboII	GAAGA	6 cut(s)	359, 401, 443, 644, 721, 800
MflI	RGATCY	3 cut(s)	410, 964, 1129
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	4 cut(s)	91, 320, 688, 1155
MlyI	GAGTC	2 cut(s)	46, 269
MmeI	TCCRAC	1 cut(s)	803
Mph1103I	ATGCAT	2 cut(s)	102, 922
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	2 cut(s)	572, 972
MspR9I	CCNGG	2 cut(s)	79, 606
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	2 cut(s)	79, 606
MwoI	GCNNNNNNNGC	7 cut(s)	158, 167, 248, 310, 1004, 1025, 1085
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	7 cut(s)	24, 391, 410, 649, 766, 964, 1129
NlaIII	CATG	7 cut(s)	21, 100, 650, 780, 924, 945, 1012
NlaIV	GGNNCC	1 cut(s)	138
NmeAIII	GCCGAG	1 cut(s)	283
NsiI	ATGCAT	2 cut(s)	102, 922
PciSI	GCTCTTC	1 cut(s)	813
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	3 cut(s)	14, 577, 1171
PfoI	TCCNGGA	2 cut(s)	77, 604
PkrI	GCNGC	3 cut(s)	169, 644, 798
PleI	GAGTC	2 cut(s)	46, 268
PpsI	GAGTC	2 cut(s)	46, 268
Ppu21I	YACGTR	1 cut(s)	629
PpuMI	RGGWCCY	1 cut(s)	190
PsiI	TTATAA	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	77, 604
PspFI	CCCAGC	1 cut(s)	968
PspGI	CCWGG	2 cut(s)	77, 604
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	8 cut(s)	110, 137, 190, 215, 325, 780, 794, 1115
PspPPI	RGGWCCY	1 cut(s)	190
PstI	CTGCAG	2 cut(s)	64, 996
PstNI	CAGNNNCTG	2 cut(s)	68, 251
PsuI	RGATCY	3 cut(s)	410, 964, 1129
PvuII	CAGCTG	2 cut(s)	572, 972
RsaI	GTAC	2 cut(s)	419, 1070
RsaNI	GTAC	2 cut(s)	418, 1069
RseI	CAYNNNNRTG	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	813
SatI	GCNGC	3 cut(s)	168, 643, 797
Sau3AI	GATC	7 cut(s)	24, 391, 410, 649, 766, 964, 1129
Sau96I	GGNCC	8 cut(s)	110, 137, 190, 215, 325, 780, 794, 1115
SchI	GAGTC	2 cut(s)	46, 269
ScrFI	CCNGG	2 cut(s)	79, 606
SduI	GDGCHC	1 cut(s)	466
SfaNI	GCATC	5 cut(s)	72, 109, 610, 816, 907
SfcI	CTRYAG	3 cut(s)	60, 183, 992
SinI	GGWCC	6 cut(s)	110, 137, 190, 215, 325, 1115
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	4 cut(s)	91, 320, 688, 1155
SsiI	CCGC	1 cut(s)	797
SspMI	CTAG	3 cut(s)	446, 881, 1189
StyD4I	CCNGG	2 cut(s)	77, 604
StyI	CCWWGG	1 cut(s)	1180
TaaI	ACNGT	3 cut(s)	122, 889, 1068
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	1 cut(s)	773
TasI	AATT	4 cut(s)	91, 320, 688, 1155
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	799
TfiI	GAWTC	3 cut(s)	14, 577, 1171
TscAI	CASTG	5 cut(s)	73, 127, 466, 678, 989
TseI	GCWGC	2 cut(s)	167, 642
TspDTI	ATGAA	6 cut(s)	6, 168, 239, 333, 722, 728
TspRI	CASTG	5 cut(s)	73, 127, 466, 678, 989
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	6 cut(s)	110, 137, 190, 215, 325, 1115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	978
XspI	CTAG	3 cut(s)	446, 881, 1189
Zsp2I	ATGCAT	2 cut(s)	102, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.