Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003841

Physical Location & Seq

Genomic Coordinates Forward (+)

59720371 .. 59724996

Gene Structure 4626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG411800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGACAATGGCGGCTTTGAATATCCTATATCAGCCATGGCCACCTACACCATCCTCTCTTTCTTTTTCCAATAATAATATTTCTTTTTTAACCCAATGTAATGCTGCTACTGCTACTATTAATAGTAAATTACTTTCTTTGTCTCATTCTTATCACTTCTCTGTTCTCTCTTCACTCCATGGAACAAACAGACCAAACTCATCATCCAAGCTCTCTTCAATGCCAACCCACCTCTCAAAGTCTGGGACTCTTACTGCAGGCACTGGATGTTCCTGGATGCAAGACAATTCCATGCATCACAACGGTGCTGCTGACAGTGAATGTGGTGAGGGTCCATTGCATTCTGCGTTTCCAGCAAAGGCTGCTGAGATTTCATCTATAGAGGACCTTTATGAGTTTATAAGTTCAGGTCCATTGATGAACAAACTGGGTTTAGCCCCAGAAGCTGTGGCCGAGTCCATTGACAAGTGGTTGGCATATGGTTTACACCTGTGTCGGCTATTTCAGCTCAATGAATTGGACCTCTCAGTTCCTCAGAAAGTTAGGATATATCACTATTATCTTCCGGTCTTTTTTTGGTGTGAAGATCAGATATCTCAGCACAGATCCTTGTACAAAGATGGAGAAGATATACCTCCTCTAGTGATTGGGTTTAGTGCACCACAAGGTTGTGGAAAGACTACACTTGTCTTTGCTCTTGATTATCTTTTCAAAGTAACTGGCAGGAAGTCTGCCACAATATCCATTGATGACTTTTATTTGACAGCTGAGAATCAGGCTAAACTAAGAGAAGCGCATCCAGGAAATGCACTTTTAGAGTTACGTGGAAATGCTGGCAGCCATGATCTTCCATTCTCTGTGGAAACACTGACTGCTCTAAGCAATTTGAGTAAAGAAGGTATGAAGATGAAGCTACCCCGATATGACAAGGTAAGTGCACCATTTAATGTTAAATCTGCTTATTCTTCTTTTTCTTTTCATTTCGAACTTTATCCGTGTTGCAGTCTGCTTACAATGGAAAGGGGGACAGAGCTGATCCTTCGACATGGCCCGAGGTGGAAGGGCCGCTTACTGCTGTTCTATTTGAAGGTTGGATGCTTGGCTTCAAACCCGTTCCTGTGGAAGTTGTCAAAGCAGTCGATCCACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0008887 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009941 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031967 GO:0031975 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00260 ko00561 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00561 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

PRK

Protein Analysis

383

Amino Acids

42.41

Weight (kDa)

8.02

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380
fragaria_vesca	FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840
malus_domestica	MD17G1198400.v1.1
prunus_persica	Prupe.3G075100_v2.0.a1
pyrus_communis	pycom09g13320 pycom17g20320
rosa_chinensis	RchiOBHm_Chr2g0137281
rosa_laevigata	RLG00000019647
rosa_multiflora	Rmu_sc0000894.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107230 Rroxscaffold_2G00142010 Rroxscaffold_3G00228320 Rroxscaffold_5G00336080 Rroxscaffold_5G00336090
rosa_rugosa	Rorug02G0340700
rosa_samantha	Rh2AG389000 Rh2BG396800 Rh2CG376500 Rh2DG411800
rosa_wichuraiana	Rw2G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
AciI	CCGC	2 cut(s)	11, 1066
AclWI	GGATC	3 cut(s)	600, 1030, 1135
AcoI	YGGCCR	2 cut(s)	38, 450
AfaI	GTAC	1 cut(s)	614
AgsI	TTSAA	5 cut(s)	19, 219, 712, 1087, 1107
AjnI	CCWGG	2 cut(s)	272, 799
AleI	CACNNNNGTG	1 cut(s)	303
AluBI	AGCT	7 cut(s)	211, 446, 508, 767, 913, 1033, 1149
AluI	AGCT	7 cut(s)	211, 446, 508, 767, 913, 1033, 1149
Alw21I	GWGCWC	2 cut(s)	661, 940
Alw26I	GTCTC	1 cut(s)	147
Alw44I	GTGCAC	2 cut(s)	657, 936
AlwI	GGATC	3 cut(s)	600, 1030, 1135
AlwNI	CAGNNNCTG	2 cut(s)	263, 446
Ama87I	CYCGRG	1 cut(s)	1051
AoxI	GGCC	4 cut(s)	38, 450, 1048, 1063
ApaLI	GTGCAC	2 cut(s)	657, 936
ApeKI	GCWGC	4 cut(s)	104, 308, 362, 837
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	6 cut(s)	332, 385, 410, 520, 1049, 1063
AsuHPI	GGTGA	1 cut(s)	338
AsuII	TTCGAA	1 cut(s)	984
AvaI	CYCGRG	1 cut(s)	1051
AvaII	GGWCC	4 cut(s)	332, 385, 410, 520
BaeGI	GKGCMC	2 cut(s)	661, 940
BalI	TGGCCA	1 cut(s)	40
Bbv12I	GWGCWC	2 cut(s)	661, 940
BbvI	GCAGC	4 cut(s)	91, 295, 349, 849
BccI	CCATC	2 cut(s)	58, 614
BciT130I	CCWGG	2 cut(s)	274, 801
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	2 cut(s)	641, 1150
BfmI	CTRYAG	2 cut(s)	255, 378
BisI	GCNGC	6 cut(s)	12, 105, 309, 363, 838, 1066
BlsI	GCNGC	6 cut(s)	13, 106, 310, 364, 839, 1067
Bme1390I	CCNGG	2 cut(s)	274, 801
Bme18I	GGWCC	4 cut(s)	332, 385, 410, 520
BmeT110I	CYCGRG	1 cut(s)	1051
BmgT120I	GGNCC	6 cut(s)	332, 385, 410, 520, 1049, 1063
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	2 cut(s)	274, 801
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	4 cut(s)	267, 304, 805, 1085
BmuI	ACTGGG	1 cut(s)	437
Bpu14I	TTCGAA	1 cut(s)	984
BsaAI	YACGTR	1 cut(s)	824
BsaJI	CCNNGG	3 cut(s)	35, 178, 1052
BsaWI	WCCGGW	1 cut(s)	565
Bse1I	ACTGG	3 cut(s)	268, 432, 724
Bse3DI	GCAATG	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	274, 801
BseDI	CCNNGG	3 cut(s)	35, 178, 1052
BseGI	GGATG	6 cut(s)	50, 203, 272, 282, 796, 1100
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	5 cut(s)	357, 540, 548, 611, 759
BseNI	ACTGG	3 cut(s)	268, 432, 724
BseRI	GAGGAG	1 cut(s)	627
BseSI	GKGCMC	2 cut(s)	661, 940
BseXI	GCAGC	4 cut(s)	91, 295, 349, 849
BshFI	GGCC	4 cut(s)	40, 452, 1050, 1065
BsiHKAI	GWGCWC	2 cut(s)	661, 940
BsiHKCI	CYCGRG	1 cut(s)	1051
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	2 cut(s)	259, 1039
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	2 cut(s)	259, 1039
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	4 cut(s)	40, 452, 1050, 1065
BsoBI	CYCGRG	1 cut(s)	1051
Bsp119I	TTCGAA	1 cut(s)	984
Bsp1286I	GDGCHC	2 cut(s)	661, 940
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	5 cut(s)	586, 605, 844, 1035, 1140
Bsp19I	CCATGG	2 cut(s)	35, 178
BspACI	CCGC	2 cut(s)	11, 1066
BspANI	GGCC	4 cut(s)	40, 452, 1050, 1065
BspCNI	CTCAG	5 cut(s)	358, 539, 547, 610, 760
BspLI	GGNNCC	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	3 cut(s)	600, 1030, 1135
BspT104I	TTCGAA	1 cut(s)	984
BsrDI	GCAATG	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	3 cut(s)	268, 432, 724
BssECI	CCNNGG	3 cut(s)	35, 178, 1052
BssMI	GATC	5 cut(s)	586, 605, 844, 1035, 1140
BssT1I	CCWWGG	2 cut(s)	35, 178
Bst2UI	CCWGG	2 cut(s)	274, 801
Bst4CI	ACNGT	2 cut(s)	305, 317
Bst6I	CTCTTC	2 cut(s)	175, 220
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	612
BstBAI	YACGTR	1 cut(s)	824
BstBI	TTCGAA	1 cut(s)	984
BstC8I	GCNNGC	2 cut(s)	259, 835
BstDEI	CTNAG	7 cut(s)	366, 526, 534, 597, 768, 785, 878
BstDSI	CCRYGG	2 cut(s)	35, 178
BstF5I	GGATG	6 cut(s)	50, 203, 272, 282, 796, 1100
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	5 cut(s)	589, 608, 847, 1038, 1143
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	5 cut(s)	586, 605, 844, 1035, 1140
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 353, 362, 443, 505
BstNI	CCWGG	2 cut(s)	274, 801
BstSCI	CCNGG	2 cut(s)	272, 799
BstSFI	CTRYAG	2 cut(s)	255, 378
BstSLI	GKGCMC	2 cut(s)	661, 940
BstV1I	GCAGC	4 cut(s)	91, 295, 349, 849
BstX2I	RGATCY	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	605
BsuRI	GGCC	4 cut(s)	40, 452, 1050, 1065
BtgI	CCRYGG	2 cut(s)	35, 178
BtsCI	GGATG	6 cut(s)	50, 203, 272, 282, 796, 1100
BtsIMutI	CAGTG	3 cut(s)	261, 322, 866
Cac8I	GCNNGC	2 cut(s)	259, 835
CaiI	CAGNNNCTG	2 cut(s)	263, 446
CfoI	GCGC	1 cut(s)	796
Cfr13I	GGNCC	6 cut(s)	332, 385, 410, 520, 1049, 1063
Csp6I	GTAC	1 cut(s)	613
CviAII	CATG	5 cut(s)	36, 179, 292, 842, 1046
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	7 cut(s)	366, 526, 534, 597, 768, 785, 878
DpnI	GATC	5 cut(s)	588, 607, 846, 1037, 1142
DpnII	GATC	5 cut(s)	586, 605, 844, 1035, 1140
EaeI	YGGCCR	2 cut(s)	38, 450
Eam1104I	CTCTTC	2 cut(s)	175, 220
EarI	CTCTTC	2 cut(s)	175, 220
Eco130I	CCWWGG	2 cut(s)	35, 178
Eco32I	GATATC	1 cut(s)	594
Eco47I	GGWCC	4 cut(s)	332, 385, 410, 520
Eco88I	CYCGRG	1 cut(s)	1051
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	272, 799
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	2 cut(s)	35, 178
EcoT22I	ATGCAT	1 cut(s)	297
ErhI	CCWWGG	2 cut(s)	35, 178
FaeI	CATG	5 cut(s)	39, 182, 295, 845, 1049
FalI	AAGNNNNNCTT	2 cut(s)	1052, 1084
FaqI	GGGAC	2 cut(s)	259, 1039
FatI	CATG	5 cut(s)	35, 178, 291, 841, 1045
FauNDI	CATATG	1 cut(s)	478
Fnu4HI	GCNGC	6 cut(s)	12, 105, 309, 363, 838, 1066
FokI	GGATG	6 cut(s)	37, 190, 279, 289, 783, 1107
Fsp4HI	GCNGC	6 cut(s)	12, 105, 309, 363, 838, 1066
FspBI	CTAG	2 cut(s)	641, 1150
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	6 cut(s)	12, 105, 309, 363, 838, 1066
HaeIII	GGCC	4 cut(s)	40, 452, 1050, 1065
HapII	CCGG	1 cut(s)	566
HhaI	GCGC	1 cut(s)	796
Hin1II	CATG	5 cut(s)	39, 182, 295, 845, 1049
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HinfI	GANTC	3 cut(s)	247, 455, 772
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	3 cut(s)	485, 659, 938
Hpy188I	TCNGA	2 cut(s)	537, 591
Hpy188III	TCNNGA	1 cut(s)	698
Hpy8I	GTNNAC	3 cut(s)	485, 659, 938
HpyAV	CCTTC	4 cut(s)	890, 1049, 1054, 1081
HpyCH4III	ACNGT	2 cut(s)	305, 317
HpyCH4IV	ACGT	1 cut(s)	823
HpyCH4V	TGCA	8 cut(s)	257, 280, 295, 340, 659, 809, 938, 1002
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 353, 362, 443, 505
HpyF3I	CTNAG	7 cut(s)	366, 526, 534, 597, 768, 785, 878
HpySE526I	ACGT	1 cut(s)	823
Hsp92II	CATG	5 cut(s)	39, 182, 295, 845, 1049
HspAI	GCGC	1 cut(s)	794
Kzo9I	GATC	5 cut(s)	586, 605, 844, 1035, 1140
Lsp1109I	GCAGC	4 cut(s)	91, 295, 349, 849
LweI	GCATC	4 cut(s)	267, 304, 805, 1085
MaeI	CTAG	2 cut(s)	641, 1150
MaeII	ACGT	1 cut(s)	823
MaeIII	GTNAC	2 cut(s)	715, 819
MalI	GATC	5 cut(s)	588, 607, 846, 1037, 1142
MboI	GATC	5 cut(s)	586, 605, 844, 1035, 1140
MboII	GAAGA	8 cut(s)	162, 207, 554, 596, 638, 839, 916, 957
MflI	RGATCY	1 cut(s)	605
MhlI	GDGCHC	2 cut(s)	661, 940
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	4 cut(s)	128, 286, 515, 883
MluNI	TGGCCA	1 cut(s)	40
MlyI	GAGTC	2 cut(s)	241, 464
MmeI	TCCRAC	1 cut(s)	1072
MnlI	CCTC	9 cut(s)	64, 242, 322, 376, 533, 543, 645, 648, 1047
Mox20I	TGGCCA	1 cut(s)	40
Mph1103I	ATGCAT	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	40
MseI	TTAA	4 cut(s)	89, 120, 945, 951
MslI	CAYNNNNRTG	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	2 cut(s)	274, 801
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	2 cut(s)	274, 801
MwoI	GCNNNNNNNGC	5 cut(s)	110, 353, 362, 443, 505
NcoI	CCATGG	2 cut(s)	35, 178
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	5 cut(s)	586, 605, 844, 1035, 1140
NlaIII	CATG	5 cut(s)	39, 182, 295, 845, 1049
NlaIV	GGNNCC	1 cut(s)	333
NmeAIII	GCCGAG	1 cut(s)	478
NsiI	ATGCAT	1 cut(s)	297
NspV	TTCGAA	1 cut(s)	984
OliI	CACNNNNGTG	1 cut(s)	303
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	772
PfoI	TCCNGGA	2 cut(s)	272, 799
PkrI	GCNGC	6 cut(s)	13, 106, 310, 364, 839, 1067
PleI	GAGTC	2 cut(s)	241, 463
PpsI	GAGTC	2 cut(s)	241, 463
Ppu21I	YACGTR	1 cut(s)	824
PpuMI	RGGWCCY	1 cut(s)	385
PshBI	ATTAAT	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	2 cut(s)	272, 799
PspGI	CCWGG	2 cut(s)	272, 799
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	6 cut(s)	332, 385, 410, 520, 1049, 1063
PspPPI	RGGWCCY	1 cut(s)	385
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	2 cut(s)	263, 446
PsuI	RGATCY	1 cut(s)	605
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	4 cut(s)	89, 120, 945, 951
SatI	GCNGC	6 cut(s)	12, 105, 309, 363, 838, 1066
Sau3AI	GATC	5 cut(s)	586, 605, 844, 1035, 1140
Sau96I	GGNCC	6 cut(s)	332, 385, 410, 520, 1049, 1063
SchI	GAGTC	2 cut(s)	241, 464
ScrFI	CCNGG	2 cut(s)	274, 801
SduI	GDGCHC	2 cut(s)	661, 940
SfaNI	GCATC	4 cut(s)	267, 304, 805, 1085
SfcI	CTRYAG	2 cut(s)	255, 378
SfuI	TTCGAA	1 cut(s)	984
SinI	GGWCC	4 cut(s)	332, 385, 410, 520
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	4 cut(s)	128, 286, 515, 883
SsiI	CCGC	2 cut(s)	11, 1066
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	2 cut(s)	641, 1150
StyD4I	CCNGG	2 cut(s)	272, 799
StyI	CCWWGG	2 cut(s)	35, 178
TaaI	ACNGT	2 cut(s)	305, 317
TaiI	ACGT	1 cut(s)	826
TaqI	TCGA	3 cut(s)	984, 1042, 1139
TasI	AATT	4 cut(s)	128, 286, 515, 883
TatI	WGTACW	1 cut(s)	612
TauI	GCSGC	2 cut(s)	14, 1068
TfiI	GAWTC	1 cut(s)	772
Tru1I	TTAA	4 cut(s)	89, 120, 945, 951
Tru9I	TTAA	4 cut(s)	89, 120, 945, 951
TscAI	CASTG	3 cut(s)	268, 322, 873
TseI	GCWGC	4 cut(s)	104, 308, 362, 837
TspDTI	ATGAA	6 cut(s)	363, 434, 528, 917, 923, 968
TspGWI	ACGGA	1 cut(s)	984
TspRI	CASTG	3 cut(s)	268, 322, 873
VneI	GTGCAC	2 cut(s)	657, 936
VpaK11BI	GGWCC	4 cut(s)	332, 385, 410, 520
VspI	ATTAAT	1 cut(s)	120
XspI	CTAG	2 cut(s)	641, 1150
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.