Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003841

Physical Location & Seq

Genomic Coordinates Forward (+)

80183122 .. 80184454

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGAACAAACAGACCAAACTCATCATCCAAGCTCTCTTCAATGCCAACCCACCTCTCAAAGTCTAGGACTCTTACTGCAGGCACTGGATGTTCCTGGATGCAAGACAATTCCATGCATCACAACGGTGCTGCTGACAGTGAATGTGATATCTCAGCACAGATCCTTGTACAAAGATGGAGAAGACATACCTCCTCTAGTGATTGGGTTTAGTGCACCACAAGGTTGTGGAAAGACTACACTTGTCTTTGCTCTTGATTATCTTTTCAAAGTAACTGGCAGGAAGTCTGCCACAATATCCATTGATGACTTTTATTTGACAGCTGAGAATCAGGCTAAACTAAGAGAAGCGCATCCAGGAAATGCACTTTTAGAGTTACGTGAAAATGCTGGCAGCCATGATCTTCCATTCTCTGTAGAGACACTGACTGCTCTAAGCAATTTGAGTAAAGAAGGTATGAAGATGAAGCTACCCCGATATGACAAGTCTGCTTACAATGGAAAGGGGGACAGAGCTGATCCTTCGACATGGCCCGAGGTGGAAGGGCCGCTTACTGTTGGATGCTTGGCTTCAAACCCGTTCCTGTGGAAGTTGTCAAAGCAGTCGATCCACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0008887 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009941 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031967 GO:0031975 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00260 ko00561 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00561 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

PRK

Protein Analysis

205

Amino Acids

22.44

Weight (kDa)

6.58

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380
fragaria_vesca	FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840
malus_domestica	MD17G1198400.v1.1
prunus_persica	Prupe.3G075100_v2.0.a1
pyrus_communis	pycom09g13320 pycom17g20320
rosa_chinensis	RchiOBHm_Chr2g0137281
rosa_laevigata	RLG00000019647
rosa_multiflora	Rmu_sc0000894.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107230 Rroxscaffold_2G00142010 Rroxscaffold_3G00228320 Rroxscaffold_5G00336080 Rroxscaffold_5G00336090
rosa_rugosa	Rorug02G0340700
rosa_samantha	Rh2AG389000 Rh2BG396800 Rh2CG376500 Rh2DG411800
rosa_wichuraiana	Rw2G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	548
AclWI	GGATC	3 cut(s)	156, 512, 601
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	41, 268, 573
AjnI	CCWGG	2 cut(s)	94, 355
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	4 cut(s)	33, 323, 469, 515
AluI	AGCT	4 cut(s)	33, 323, 469, 515
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	413
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	3 cut(s)	156, 512, 601
AlwNI	CAGNNNCTG	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	2 cut(s)	530, 545
ApaLI	GTGCAC	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	130, 393
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	531, 545
AvaI	CYCGRG	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	117, 405
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	2 cut(s)	96, 357
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	2 cut(s)	65, 197
BfmI	CTRYAG	2 cut(s)	77, 414
BisI	GCNGC	3 cut(s)	131, 394, 548
BlsI	GCNGC	3 cut(s)	132, 395, 549
Bme1390I	CCNGG	2 cut(s)	96, 357
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	2 cut(s)	531, 545
BmrFI	CCNGG	2 cut(s)	96, 357
BmsI	GCATC	4 cut(s)	89, 126, 361, 551
BpiI	GAAGAC	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	534
Bse1I	ACTGG	2 cut(s)	90, 280
BseBI	CCWGG	2 cut(s)	96, 357
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	5 cut(s)	25, 94, 104, 352, 566
BseMII	CTCAG	2 cut(s)	167, 315
BseNI	ACTGG	2 cut(s)	90, 280
BseRI	GAGGAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	117, 405
BshFI	GGCC	2 cut(s)	532, 547
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	2 cut(s)	532, 547
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	161, 400, 517, 606
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	2 cut(s)	532, 547
BspCNI	CTCAG	2 cut(s)	166, 316
BspMAI	CTGCAG	1 cut(s)	81
BspPI	GGATC	3 cut(s)	156, 512, 601
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	90, 280
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	4 cut(s)	161, 400, 517, 606
Bst2UI	CCWGG	2 cut(s)	96, 357
Bst4CI	ACNGT	3 cut(s)	127, 139, 556
Bst6I	CTCTTC	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	81, 391
BstDEI	CTNAG	4 cut(s)	153, 324, 341, 434
BstF5I	GGATG	5 cut(s)	25, 94, 104, 352, 566
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	4 cut(s)	164, 403, 520, 609
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	4 cut(s)	161, 400, 517, 606
BstNI	CCWGG	2 cut(s)	96, 357
BstSCI	CCNGG	2 cut(s)	94, 355
BstSFI	CTRYAG	2 cut(s)	77, 414
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	117, 405
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	532, 547
BtsCI	GGATG	5 cut(s)	25, 94, 104, 352, 566
BtsIMutI	CAGTG	3 cut(s)	83, 144, 422
Cac8I	GCNNGC	2 cut(s)	81, 391
CaiI	CAGNNNCTG	1 cut(s)	85
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	531, 545
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	3 cut(s)	114, 398, 528
CviJI	RGCY	9 cut(s)	33, 323, 335, 396, 469, 515, 532, 547, 569
CviKI_1	RGCY	9 cut(s)	33, 323, 335, 396, 469, 515, 532, 547, 569
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	4 cut(s)	153, 324, 341, 434
DpnI	GATC	4 cut(s)	163, 402, 519, 608
DpnII	GATC	4 cut(s)	161, 400, 517, 606
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	94, 355
EcoRV	GATATC	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	119
FaeI	CATG	3 cut(s)	117, 401, 531
FaiI	YATR	6 cut(s)	115, 188, 399, 458, 480, 529
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	3 cut(s)	113, 397, 527
Fnu4HI	GCNGC	3 cut(s)	131, 394, 548
FokI	GGATG	5 cut(s)	12, 101, 111, 339, 573
Fsp4HI	GCNGC	3 cut(s)	131, 394, 548
FspBI	CTAG	2 cut(s)	65, 197
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	3 cut(s)	131, 394, 548
HaeIII	GGCC	2 cut(s)	532, 547
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	3 cut(s)	117, 401, 531
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	2 cut(s)	69, 328
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	446, 531, 536
HpyCH4III	ACNGT	3 cut(s)	127, 139, 556
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	5 cut(s)	79, 102, 117, 215, 365
HpyF3I	CTNAG	4 cut(s)	153, 324, 341, 434
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	3 cut(s)	117, 401, 531
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	4 cut(s)	161, 400, 517, 606
Lsp1109I	GCAGC	2 cut(s)	117, 405
LweI	GCATC	4 cut(s)	89, 126, 361, 551
MaeI	CTAG	2 cut(s)	65, 197
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	271, 375
MalI	GATC	4 cut(s)	163, 402, 519, 608
MboI	GATC	4 cut(s)	161, 400, 517, 606
MboII	GAAGA	4 cut(s)	29, 194, 395, 472
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	2 cut(s)	108, 439
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	4 cut(s)	64, 201, 204, 529
Mph1103I	ATGCAT	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	96, 357
MvaI	CCWGG	2 cut(s)	96, 357
NdeII	GATC	4 cut(s)	161, 400, 517, 606
NlaIII	CATG	3 cut(s)	117, 401, 531
NsiI	ATGCAT	1 cut(s)	119
OliI	CACNNNNGTG	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	328
PfoI	TCCNGGA	2 cut(s)	94, 355
PkrI	GCNGC	3 cut(s)	132, 395, 549
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
Ppu21I	YACGTR	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	94, 355
PspGI	CCWGG	2 cut(s)	94, 355
PspPI	GGNCC	2 cut(s)	531, 545
PstI	CTGCAG	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	125
SatI	GCNGC	3 cut(s)	131, 394, 548
Sau3AI	GATC	4 cut(s)	161, 400, 517, 606
Sau96I	GGNCC	2 cut(s)	531, 545
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	2 cut(s)	96, 357
SduI	GDGCHC	1 cut(s)	217
SfaNI	GCATC	4 cut(s)	89, 126, 361, 551
SfcI	CTRYAG	2 cut(s)	77, 414
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	108, 439
SsiI	CCGC	1 cut(s)	548
SspMI	CTAG	2 cut(s)	65, 197
StyD4I	CCNGG	2 cut(s)	94, 355
TaaI	ACNGT	3 cut(s)	127, 139, 556
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	524, 605
TasI	AATT	2 cut(s)	108, 439
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	1 cut(s)	328
TscAI	CASTG	3 cut(s)	90, 144, 429
TseI	GCWGC	2 cut(s)	130, 393
TspDTI	ATGAA	2 cut(s)	473, 479
TspRI	CASTG	3 cut(s)	90, 144, 429
VneI	GTGCAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	65, 197
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.