Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003841

Physical Location & Seq

Genomic Coordinates Forward (+)

58260601 .. 58265937

Gene Structure 5337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG389000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGACAATGGCGACTTTGAATATCCTATATCAGCCATGGCCACCTACACCATCCTCTCTCTCTTTTTCCAATAATAATATTTCTTTTTTAACCCAATGTAATGCTGCTACTGCTACTATTAATAGTAAATTACTTTCTTTGTCTCATTCTTATCACTTCTCTGTTCTCTCTTCACTCCATGGAACAAACAGACCAAACTCATCATCCAAGCTCTTTTCAATGCCAACCCACCTCTCAAAGTCTGGGACTCTTACTGCAGGCACTGGATGTTCCTGGATGCAAGACAATTCCATGCATCACAACGGTGCTGCTGACAGTGAATGTGGTGAGGGTCCATTGCATTCTGCGTTTCCAGCAAAGGCTGCTGAGATTTCATCTATAGAGGACCTTTATGAGTTTATAAGTTCAGGTCCATTGATGAACAAACTGGGTTTAGCCCCAGAAGCTGTGGCCGAGTCCATTGACAAGTGGTTGGCATATGGTTTACACCTGTGTCGGCTATTTCAGCTCAATGAATTGGACCTCTCAGTTCCTCAGAAAGTTCGGATATATCACTATTATCTTCCGGTCTTTTTTTGGTGTGAAGATCAGATATCTCAGCACAGGTCCTTGTACAAAGATGGAGAAGATATACCTCCTCTAGTGATTGGGTTTAGTGCACCACAAGGTTGTGGAAAGACTACACTTGTCTTTGCTCTTGATTATCTTTTCAAAGTAACTGGCAGGAAGTCTGCCACAATATCCATTGATGACTTTTATTTGACAGCTGAGAATCAGGCTAAACTAAGAGAAGCGCATCCAGGAAATGCACTTTTAGAGGTAGCAATGAGTTTACCTTATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0008887 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009941 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031967 GO:0031975 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00260 ko00561 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00561 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

PRK

Protein Analysis

281

Amino Acids

30.92

Weight (kDa)

6.1

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380
fragaria_vesca	FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840
malus_domestica	MD17G1198400.v1.1
prunus_persica	Prupe.3G075100_v2.0.a1
pyrus_communis	pycom09g13320 pycom17g20320
rosa_chinensis	RchiOBHm_Chr2g0137281
rosa_laevigata	RLG00000019647
rosa_multiflora	Rmu_sc0000894.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107230 Rroxscaffold_2G00142010 Rroxscaffold_3G00228320 Rroxscaffold_5G00336080 Rroxscaffold_5G00336090
rosa_rugosa	Rorug02G0340700
rosa_samantha	Rh2AG389000 Rh2BG396800 Rh2CG376500 Rh2DG411800
rosa_wichuraiana	Rw2G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	401, 840
AcoI	YGGCCR	2 cut(s)	38, 450
AfaI	GTAC	1 cut(s)	614
AgsI	TTSAA	3 cut(s)	19, 219, 712
AjnI	CCWGG	2 cut(s)	272, 799
AleI	CACNNNNGTG	1 cut(s)	303
AluBI	AGCT	4 cut(s)	211, 446, 508, 767
AluI	AGCT	4 cut(s)	211, 446, 508, 767
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	1 cut(s)	147
Alw44I	GTGCAC	1 cut(s)	657
AlwNI	CAGNNNCTG	2 cut(s)	263, 446
AoxI	GGCC	2 cut(s)	38, 450
ApaLI	GTGCAC	1 cut(s)	657
ApeKI	GCWGC	3 cut(s)	104, 308, 362
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	5 cut(s)	332, 385, 410, 520, 606
AsuHPI	GGTGA	1 cut(s)	338
AvaII	GGWCC	5 cut(s)	332, 385, 410, 520, 606
BaeGI	GKGCMC	1 cut(s)	661
BalI	TGGCCA	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	3 cut(s)	91, 295, 349
BccI	CCATC	2 cut(s)	58, 614
BciT130I	CCWGG	2 cut(s)	274, 801
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	641
BfmI	CTRYAG	2 cut(s)	255, 378
BisI	GCNGC	3 cut(s)	105, 309, 363
BlsI	GCNGC	3 cut(s)	106, 310, 364
Bme1390I	CCNGG	2 cut(s)	274, 801
Bme18I	GGWCC	5 cut(s)	332, 385, 410, 520, 606
BmgT120I	GGNCC	5 cut(s)	332, 385, 410, 520, 606
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	2 cut(s)	274, 801
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	3 cut(s)	267, 304, 805
BmuI	ACTGGG	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	35, 178
BsaWI	WCCGGW	1 cut(s)	565
Bse1I	ACTGG	3 cut(s)	268, 432, 724
Bse3DI	GCAATG	2 cut(s)	335, 831
BseBI	CCWGG	2 cut(s)	274, 801
BseDI	CCNNGG	2 cut(s)	35, 178
BseGI	GGATG	5 cut(s)	50, 203, 272, 282, 796
BseMI	GCAATG	2 cut(s)	335, 831
BseMII	CTCAG	5 cut(s)	357, 540, 548, 611, 759
BseNI	ACTGG	3 cut(s)	268, 432, 724
BseRI	GAGGAG	1 cut(s)	627
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	3 cut(s)	91, 295, 349
BshFI	GGCC	2 cut(s)	40, 452
BsiHKAI	GWGCWC	1 cut(s)	661
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	40, 452
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	1 cut(s)	586
Bsp19I	CCATGG	2 cut(s)	35, 178
BspANI	GGCC	2 cut(s)	40, 452
BspCNI	CTCAG	5 cut(s)	358, 539, 547, 610, 760
BspLI	GGNNCC	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	259
BsrDI	GCAATG	2 cut(s)	335, 831
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	3 cut(s)	268, 432, 724
BssECI	CCNNGG	2 cut(s)	35, 178
BssMI	GATC	1 cut(s)	586
BssT1I	CCWWGG	2 cut(s)	35, 178
Bst2UI	CCWGG	2 cut(s)	274, 801
Bst4CI	ACNGT	2 cut(s)	305, 317
Bst6I	CTCTTC	1 cut(s)	175
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	6 cut(s)	366, 526, 534, 597, 768, 785
BstDSI	CCRYGG	2 cut(s)	35, 178
BstF5I	GGATG	5 cut(s)	50, 203, 272, 282, 796
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	1 cut(s)	589
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	586
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 353, 362, 443, 505
BstNI	CCWGG	2 cut(s)	274, 801
BstSCI	CCNGG	2 cut(s)	272, 799
BstSFI	CTRYAG	2 cut(s)	255, 378
BstSLI	GKGCMC	1 cut(s)	661
BstV1I	GCAGC	3 cut(s)	91, 295, 349
BsuRI	GGCC	2 cut(s)	40, 452
BtgI	CCRYGG	2 cut(s)	35, 178
BtsCI	GGATG	5 cut(s)	50, 203, 272, 282, 796
BtsIMutI	CAGTG	2 cut(s)	261, 322
Cac8I	GCNNGC	1 cut(s)	259
CaiI	CAGNNNCTG	2 cut(s)	263, 446
CfoI	GCGC	1 cut(s)	796
Cfr13I	GGNCC	5 cut(s)	332, 385, 410, 520, 606
Csp6I	GTAC	1 cut(s)	613
CviAII	CATG	3 cut(s)	36, 179, 292
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	6 cut(s)	366, 526, 534, 597, 768, 785
DpnI	GATC	1 cut(s)	588
DpnII	GATC	1 cut(s)	586
EaeI	YGGCCR	2 cut(s)	38, 450
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	35, 178
Eco32I	GATATC	1 cut(s)	594
Eco47I	GGWCC	5 cut(s)	332, 385, 410, 520, 606
EcoO109I	RGGNCCY	2 cut(s)	385, 606
EcoRII	CCWGG	2 cut(s)	272, 799
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	2 cut(s)	35, 178
EcoT22I	ATGCAT	1 cut(s)	297
ErhI	CCWWGG	2 cut(s)	35, 178
FaeI	CATG	3 cut(s)	39, 182, 295
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	3 cut(s)	35, 178, 291
FauNDI	CATATG	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	105, 309, 363
FokI	GGATG	5 cut(s)	37, 190, 279, 289, 783
Fsp4HI	GCNGC	3 cut(s)	105, 309, 363
FspBI	CTAG	1 cut(s)	641
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	3 cut(s)	105, 309, 363
HaeIII	GGCC	2 cut(s)	40, 452
HapII	CCGG	1 cut(s)	566
HhaI	GCGC	1 cut(s)	796
Hin1II	CATG	3 cut(s)	39, 182, 295
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HinfI	GANTC	3 cut(s)	247, 455, 772
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	3 cut(s)	485, 659, 833
Hpy188I	TCNGA	3 cut(s)	537, 546, 591
Hpy188III	TCNNGA	1 cut(s)	698
Hpy8I	GTNNAC	3 cut(s)	485, 659, 833
HpyCH4III	ACNGT	2 cut(s)	305, 317
HpyCH4V	TGCA	6 cut(s)	257, 280, 295, 340, 659, 809
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 353, 362, 443, 505
HpyF3I	CTNAG	6 cut(s)	366, 526, 534, 597, 768, 785
Hsp92II	CATG	3 cut(s)	39, 182, 295
HspAI	GCGC	1 cut(s)	794
Kzo9I	GATC	1 cut(s)	586
Lsp1109I	GCAGC	3 cut(s)	91, 295, 349
LweI	GCATC	3 cut(s)	267, 304, 805
MaeI	CTAG	1 cut(s)	641
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	1 cut(s)	588
MboI	GATC	1 cut(s)	586
MboII	GAAGA	4 cut(s)	162, 554, 596, 638
MhlI	GDGCHC	1 cut(s)	661
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	3 cut(s)	128, 286, 515
MluNI	TGGCCA	1 cut(s)	40
MlyI	GAGTC	2 cut(s)	241, 464
MnlI	CCTC	9 cut(s)	64, 242, 322, 376, 533, 543, 645, 648, 811
Mox20I	TGGCCA	1 cut(s)	40
Mph1103I	ATGCAT	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	40
MseI	TTAA	2 cut(s)	89, 120
MslI	CAYNNNNRTG	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	2 cut(s)	274, 801
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	2 cut(s)	274, 801
MwoI	GCNNNNNNNGC	5 cut(s)	110, 353, 362, 443, 505
NcoI	CCATGG	2 cut(s)	35, 178
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	1 cut(s)	586
NlaIII	CATG	3 cut(s)	39, 182, 295
NlaIV	GGNNCC	1 cut(s)	333
NmeAIII	GCCGAG	1 cut(s)	478
NsiI	ATGCAT	1 cut(s)	297
OliI	CACNNNNGTG	1 cut(s)	303
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	772
PfoI	TCCNGGA	2 cut(s)	272, 799
PkrI	GCNGC	3 cut(s)	106, 310, 364
PleI	GAGTC	2 cut(s)	241, 463
PpsI	GAGTC	2 cut(s)	241, 463
PpuMI	RGGWCCY	2 cut(s)	385, 606
PshBI	ATTAAT	1 cut(s)	120
PsiI	TTATAA	2 cut(s)	401, 840
Psp5II	RGGWCCY	2 cut(s)	385, 606
Psp6I	CCWGG	2 cut(s)	272, 799
PspGI	CCWGG	2 cut(s)	272, 799
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	5 cut(s)	332, 385, 410, 520, 606
PspPPI	RGGWCCY	2 cut(s)	385, 606
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	2 cut(s)	263, 446
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	89, 120
SatI	GCNGC	3 cut(s)	105, 309, 363
Sau3AI	GATC	1 cut(s)	586
Sau96I	GGNCC	5 cut(s)	332, 385, 410, 520, 606
SchI	GAGTC	2 cut(s)	241, 464
ScrFI	CCNGG	2 cut(s)	274, 801
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	3 cut(s)	267, 304, 805
SfcI	CTRYAG	2 cut(s)	255, 378
SinI	GGWCC	5 cut(s)	332, 385, 410, 520, 606
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	3 cut(s)	128, 286, 515
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	641
StyD4I	CCNGG	2 cut(s)	272, 799
StyI	CCWWGG	2 cut(s)	35, 178
TaaI	ACNGT	2 cut(s)	305, 317
TasI	AATT	3 cut(s)	128, 286, 515
TatI	WGTACW	1 cut(s)	612
TfiI	GAWTC	1 cut(s)	772
Tru1I	TTAA	2 cut(s)	89, 120
Tru9I	TTAA	2 cut(s)	89, 120
TscAI	CASTG	2 cut(s)	268, 322
TseI	GCWGC	3 cut(s)	104, 308, 362
TspDTI	ATGAA	3 cut(s)	363, 434, 528
TspRI	CASTG	2 cut(s)	268, 322
VneI	GTGCAC	1 cut(s)	657
VpaK11BI	GGWCC	5 cut(s)	332, 385, 410, 520, 606
VspI	ATTAAT	1 cut(s)	120
XspI	CTAG	1 cut(s)	641
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.