Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003841

Physical Location & Seq

Genomic Coordinates Reverse (-)

12000497 .. 12002102

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGACAAAGCGATCTTATGAGGTGGCGGTGATAACGATGGTGGTAAAAGTGTTACGTGGTGATTGTTGGCAAGATGGTGATATTAAAGTTGATGTCTTTGGTCATAGTAAGTATATCAATCCTCTCTGCAATTCTTGCCCGCTTCCACTCCACTATTACCACTTGTTAGAAAACATGGTCGAGAGAGGGAGGAGAGAGAGAGCGATGAAAATGGCGATTGTGAACATGTTATCTCAGCCATGGCCGCCTACACCATCTCTCTATGCTGCTAATAATACTAATAAGTCAAATGCTAATAATTGTAAATTACATTCTTATCGCTACTCTGTTGCTGCTTCACCCTATGAACCAAATAGATCAAATCCACCATCCAAGCTCTCTACAATTTCCACCCGTTTCTCAAAGTCCGGATTCTTCTTACAGGCAGTGGATGTTCCTAGATACAAGACAATTCCATGCATCACAAAAATTCTACCAATAGTGAATGTGGAGAGGGTCCATTGTATTGTGTGTTTCCTACGAAGCCTGCAGAAGTTTCTTTTATGCAGGACCTTTTTAAATTTATATGCTCATGTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0008887 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009941 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0031967 GO:0031975 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00260 ko00561 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00561 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

PRK

Protein Analysis

194

Amino Acids

22.17

Weight (kDa)

9.62

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380 AT1G80380
fragaria_vesca	FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840 FvH4_6g30840
malus_domestica	MD17G1198400.v1.1
prunus_persica	Prupe.3G075100_v2.0.a1
pyrus_communis	pycom09g13320 pycom17g20320
rosa_chinensis	RchiOBHm_Chr2g0137281
rosa_laevigata	RLG00000019647
rosa_multiflora	Rmu_sc0000894.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107230 Rroxscaffold_2G00142010 Rroxscaffold_3G00228320 Rroxscaffold_5G00336080 Rroxscaffold_5G00336090
rosa_rugosa	Rorug02G0340700
rosa_samantha	Rh2AG389000 Rh2BG396800 Rh2CG376500 Rh2DG411800
rosa_wichuraiana	Rw2G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	407
AciI	CCGC	3 cut(s)	26, 140, 245
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	468, 559
AflIII	ACRYGT	1 cut(s)	225
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Aor13HI	TCCGGA	1 cut(s)	407
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	2 cut(s)	266, 332
ApoI	RAATTY	2 cut(s)	468, 559
AspS9I	GGNCC	2 cut(s)	496, 549
AsuHPI	GGTGA	4 cut(s)	40, 71, 89, 330
AvaII	GGWCC	2 cut(s)	496, 549
BbvI	GCAGC	2 cut(s)	253, 319
BccI	CCATC	4 cut(s)	31, 68, 262, 376
BfaI	CTAG	1 cut(s)	438
BfmI	CTRYAG	1 cut(s)	527
BisI	GCNGC	3 cut(s)	245, 267, 333
BlsI	GCNGC	3 cut(s)	246, 268, 334
Bme18I	GGWCC	2 cut(s)	496, 549
BmgT120I	GGNCC	2 cut(s)	496, 549
BmiI	GGNNCC	1 cut(s)	497
BmsI	GCATC	1 cut(s)	468
BsaAI	YACGTR	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	407
BseAI	TCCGGA	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	2 cut(s)	368, 436
BseMII	CTCAG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	253, 319
BshFI	GGCC	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	408
BsnI	GGCC	1 cut(s)	244
Bsp13I	TCCGGA	1 cut(s)	407
Bsp143I	GATC	2 cut(s)	11, 356
Bsp19I	CCATGG	1 cut(s)	239
BspACI	CCGC	3 cut(s)	26, 140, 245
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	497
BspMAI	CTGCAG	1 cut(s)	531
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	2 cut(s)	11, 356
BssT1I	CCWWGG	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	140, 527
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	368, 436
BstKTI	GATC	2 cut(s)	14, 359
BstMBI	GATC	2 cut(s)	11, 356
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 244
BstNSI	RCATGY	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	527
BstV1I	GCAGC	2 cut(s)	253, 319
BsuRI	GGCC	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	218
BtsCI	GGATG	2 cut(s)	368, 436
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	140, 527
Cfr13I	GGNCC	2 cut(s)	496, 549
CviAII	CATG	5 cut(s)	175, 226, 240, 456, 572
CviJI	RGCY	4 cut(s)	238, 244, 376, 525
CviKI_1	RGCY	4 cut(s)	238, 244, 376, 525
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	13, 358
DpnII	GATC	2 cut(s)	11, 356
DraI	TTTAAA	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	239
Eco47I	GGWCC	2 cut(s)	496, 549
EcoO109I	RGGNCCY	1 cut(s)	549
EcoT14I	CCWWGG	1 cut(s)	239
EcoT22I	ATGCAT	1 cut(s)	461
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	5 cut(s)	178, 229, 243, 459, 575
FatI	CATG	5 cut(s)	174, 225, 239, 455, 571
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	245, 267, 333
FokI	GGATG	2 cut(s)	355, 443
Fsp4HI	GCNGC	3 cut(s)	245, 267, 333
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	3 cut(s)	245, 267, 333
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	5 cut(s)	178, 229, 243, 459, 575
HinfI	GANTC	1 cut(s)	411
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	4 cut(s)	40, 71, 89, 330
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188III	TCNNGA	2 cut(s)	181, 408
Hpy8I	GTNNAC	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	4 cut(s)	129, 459, 529, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 244
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	5 cut(s)	178, 229, 243, 459, 575
Kpn2I	TCCGGA	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	11, 356
LpnPI	CCDG	4 cut(s)	407, 421, 532, 539
Lsp1109I	GCAGC	2 cut(s)	253, 319
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	2 cut(s)	13, 358
MboI	GATC	2 cut(s)	11, 356
MboII	GAAGA	1 cut(s)	406
MluCI	AATT	7 cut(s)	130, 298, 305, 384, 450, 468, 559
MnlI	CCTC	5 cut(s)	13, 132, 179, 183, 486
Mph1103I	ATGCAT	1 cut(s)	461
MroI	TCCGGA	1 cut(s)	407
MseI	TTAA	2 cut(s)	84, 557
MspI	CCGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	135, 244
NcoI	CCATGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	11, 356
NlaIII	CATG	5 cut(s)	178, 229, 243, 459, 575
NlaIV	GGNNCC	1 cut(s)	497
NsiI	ATGCAT	1 cut(s)	461
NspI	RCATGY	1 cut(s)	229
PciI	ACATGT	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	411
PkrI	GCNGC	3 cut(s)	246, 268, 334
Ppu21I	YACGTR	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	549
PscI	ACATGT	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	549
PspN4I	GGNNCC	1 cut(s)	497
PspPI	GGNCC	2 cut(s)	496, 549
PspPPI	RGGWCCY	1 cut(s)	549
PstI	CTGCAG	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	84, 557
SatI	GCNGC	3 cut(s)	245, 267, 333
Sau3AI	GATC	2 cut(s)	11, 356
Sau96I	GGNCC	2 cut(s)	496, 549
SetI	ASST	4 cut(s)	24, 58, 378, 554
SfaNI	GCATC	1 cut(s)	468
SfcI	CTRYAG	1 cut(s)	527
SinI	GGWCC	2 cut(s)	496, 549
Sse9I	AATT	7 cut(s)	130, 298, 305, 384, 450, 468, 559
SsiI	CCGC	3 cut(s)	26, 140, 245
SspMI	CTAG	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	239
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	180
TasI	AATT	7 cut(s)	130, 298, 305, 384, 450, 468, 559
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	411
Tru1I	TTAA	2 cut(s)	84, 557
Tru9I	TTAA	2 cut(s)	84, 557
TscAI	CASTG	1 cut(s)	432
TseI	GCWGC	2 cut(s)	266, 332
TspDTI	ATGAA	2 cut(s)	221, 360
TspRI	CASTG	1 cut(s)	432
VpaK11BI	GGWCC	2 cut(s)	496, 549
XapI	RAATTY	2 cut(s)	468, 559
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	1 cut(s)	438
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.