FvH4_6g30840

D-glycerate 3-kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
23993065 .. 23998445
5381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30840.t7

Sequence Viewer

Length: 1359 bp
ATGACAATGGCTGCTTTGAATATCCTATCTCAGCCATGGCCACCTCTCTCTTTTTCCAATAATAATATTTCATATCTAACCAAATGCATTAGCAATACTAAATTACTTTCTTTGTCTCATTCTTATCACTTCTCTGTTCTCTCTTCTCTCTATGGAACCAACAGACCAAACTCTTCATCCAAGCTCTCTTCAATGCCCACCCACCTCTCAAAGTCTGGGACTCTTGCTGCAGGCAGTGGATATTCCTGGATACAAGACAATTCCATGCATCATAATGATGTTTATGGCAGTGAATGCGGTGAGGTCCCATTGCATTCCGTGTTTCCAACAAAGGCTGCGGAGGTTTCTTCTGTAGAGGACCTTTATGAGTTTATAAGCTCAGGTCCATTCATGAACAGCCTGGGTCTAACCCCAGAAGGCGTGGCTGAATCCATTGACAAGTGGTTGGCATATGGGTTACACCTGTGTCGGCTGTTTCAGCTCAATGAATTGGACCTCTCATTTCCTCAGAAAGTTAGGCTATATCACTACTATCTTCCGGTCTTTTTTTGGTGTGAAGATCAGATATCTCAGCACAGATCCCAGTACAAAGATGGAGAAGATATACCTCCTCTAGTGATTGGGTTTAGTGCACCACAAGGTTGTGGGAAGACTACACTTGTCTTTGCTCTTGATTATCTTTTCAAAGTTACTGGCAGGAAGTCTGCCACAATATCCATTGATGACTTTTATTTGACAGCAGAGAATCAGGCTAAACTAAGAGAAGCGCACCCAGGAAATGCACTTTTAGAGTTACGCGGAAATGCTGGCAGCCATGACCTTCCATTTTCTGTCGAGACACTGACTGCTCTAAGCAATTTGAGTAAAGAAGGTATGAAGATGAAGCTTCCCCGATATGACAAGTCTGCTTACAATGGAAAGGGAGACAGAGCCGATCCTTCGACATGGCCTGAAGTGGAAGGGCCACTTACTGTTGTTCTATTTGAAGGTTGGATGCTTGGCTTCAAACCTGTTCCTGTGGAAGTTGTCAAAGCAGTTGATCCACAGCTTGAGACGGTAAATAGAAATCTGGAAGCCTATTACGATGCATGGGACAAGTTCATCAAAGCATGGATTATAATCAAGATCAAAGATCCCAGCTGTGTCTACCAGTGGCGTCTGCAGGCAGAGATTGCCATGAGAGAAGCAGGAAACCCCGGAATGTCCGATGATGAGGTAAAGGATTTTGTTTCACGGTACTTGCCAGCATACAACGCTTACCTTCCTACCCTTTATTCCGAAGGACCAAGAGGGTCAGATCCAAAGCACCTCATCGTTGTAGAAATTGATGAGGGAAGGAACCCCATCCTTGGTAACTAG

Protein Analysis

453

Amino Acids

50.49

Weight (kDa)

5.59

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 374, 1118
AccI GTMKAC 1 cut(s) 1146
AccII CGCG 1 cut(s) 798
AciI CCGC 3 cut(s) 297, 338, 798
AclWI GGATC 5 cut(s) 573, 929, 1034, 1127, 1292
AcoI YGGCCR 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 972
AcyI GRCGYC 1 cut(s) 1156
AfaI GTAC 2 cut(s) 587, 1238
AfiI CCNNNNNNNGG 1 cut(s) 1349
AgsI TTSAA 5 cut(s) 19, 192, 685, 986, 1006
AjnI CCWGG 3 cut(s) 245, 399, 772
AluBI AGCT 6 cut(s) 184, 378, 481, 886, 1048, 1140
AluI AGCT 6 cut(s) 184, 378, 481, 886, 1048, 1140
Alw21I GWGCWC 1 cut(s) 634
Alw26I GTCTC 4 cut(s) 120, 830, 918, 1046
Alw44I GTGCAC 1 cut(s) 630
AlwI GGATC 5 cut(s) 573, 929, 1034, 1127, 1292
AoxI GGCC 3 cut(s) 38, 947, 962
ApaLI GTGCAC 1 cut(s) 630
ApeKI GCWGC 4 cut(s) 11, 227, 335, 810
AspLEI GCGC 1 cut(s) 769
AspS9I GGNCC 6 cut(s) 304, 358, 383, 493, 962, 1283
AsuC2I CCSGG 1 cut(s) 1197
AsuHPI GGTGA 1 cut(s) 311
AvaII GGWCC 5 cut(s) 304, 358, 383, 493, 1283
BaeGI GKGCMC 1 cut(s) 634
BalI TGGCCA 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 656
Bbv12I GWGCWC 1 cut(s) 634
BbvI GCAGC 3 cut(s) 214, 322, 822
BccI CCATC 2 cut(s) 587, 1352
BciT130I CCWGG 3 cut(s) 247, 401, 774
BciVI GTATCC 1 cut(s) 243
BcnI CCSGG 1 cut(s) 1197
BcoDI GTCTC 4 cut(s) 120, 830, 918, 1046
BfaI CTAG 2 cut(s) 614, 1357
BfmI CTRYAG 3 cut(s) 228, 351, 1160
BfuI GTATCC 1 cut(s) 243
BisI GCNGC 4 cut(s) 12, 228, 336, 811
BlsI GCNGC 4 cut(s) 13, 229, 337, 812
Bme1390I CCNGG 4 cut(s) 247, 401, 774, 1197
Bme18I GGWCC 5 cut(s) 304, 358, 383, 493, 1283
BmgT120I GGNCC 6 cut(s) 304, 358, 383, 493, 962, 1283
BmiI GGNNCC 3 cut(s) 157, 306, 1340
BmrFI CCNGG 4 cut(s) 247, 401, 774, 1197
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 3 cut(s) 277, 984, 1075
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 656
Bpu10I CCTNAGC 1 cut(s) 379
BpuEI CTTGAG 1 cut(s) 1070
BpuMI CCSGG 1 cut(s) 1197
BsaBI GATNNNNATC 1 cut(s) 1118
BsaHI GRCGYC 1 cut(s) 1156
BsaJI CCNNGG 5 cut(s) 35, 400, 772, 1195, 1348
BsaWI WCCGGW 1 cut(s) 538
Bsc4I CCNNNNNNNGG 1 cut(s) 1349
Bse1I ACTGG 3 cut(s) 583, 697, 1150
Bse3DI GCAATG 1 cut(s) 308
Bse8I GATNNNNATC 1 cut(s) 1118
BseBI CCWGG 3 cut(s) 247, 401, 774
BseDI CCNNGG 5 cut(s) 35, 400, 772, 1195, 1348
BseGI GGATG 3 cut(s) 176, 999, 1344
BseJI GATNNNNATC 1 cut(s) 1118
BseLI CCNNNNNNNGG 1 cut(s) 1349
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 4 cut(s) 44, 393, 521, 584
BseNI ACTGG 3 cut(s) 583, 697, 1150
BseRI GAGGAG 1 cut(s) 600
BseSI GKGCMC 1 cut(s) 634
BseXI GCAGC 3 cut(s) 214, 322, 822
BseYI CCCAGC 1 cut(s) 1136
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 3 cut(s) 40, 949, 964
BsiHKAI GWGCWC 1 cut(s) 634
BsiSI CCGG 2 cut(s) 539, 1197
BslFI GGGAC 3 cut(s) 232, 290, 1106
BslI CCNNNNNNNGG 1 cut(s) 1349
BsmAI GTCTC 4 cut(s) 120, 830, 918, 1046
BsmBI CGTCTC 1 cut(s) 1046
BsmFI GGGAC 3 cut(s) 232, 290, 1106
BsmI GAATGC 2 cut(s) 299, 313
BsnI GGCC 3 cut(s) 40, 949, 964
Bsp1286I GDGCHC 1 cut(s) 634
Bsp143I GATC 7 cut(s) 559, 578, 934, 1039, 1125, 1132, 1297
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 3 cut(s) 297, 338, 798
BspANI GGCC 3 cut(s) 40, 949, 964
BspCNI CTCAG 4 cut(s) 43, 392, 520, 583
BspFNI CGCG 1 cut(s) 798
BspHI TCATGA 1 cut(s) 390
BspLI GGNNCC 3 cut(s) 157, 306, 1340
BspMAI CTGCAG 2 cut(s) 232, 1164
BspPI GGATC 5 cut(s) 573, 929, 1034, 1127, 1292
BsrDI GCAATG 1 cut(s) 308
BsrI ACTGG 3 cut(s) 583, 697, 1150
BssECI CCNNGG 5 cut(s) 35, 400, 772, 1195, 1348
BssMI GATC 7 cut(s) 559, 578, 934, 1039, 1125, 1132, 1297
BssNI GRCGYC 1 cut(s) 1156
BssT1I CCWWGG 2 cut(s) 35, 1348
Bst2UI CCWGG 3 cut(s) 247, 401, 774
Bst4CI ACNGT 3 cut(s) 973, 1057, 1236
Bst6I CTCTTC 3 cut(s) 148, 178, 193
BstACI GRCGYC 1 cut(s) 1156
BstAPI GCANNNNNTGC 2 cut(s) 294, 1172
BstC8I GCNNGC 4 cut(s) 232, 808, 1164, 1245
BstDEI CTNAG 6 cut(s) 30, 379, 507, 570, 758, 851
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 3 cut(s) 176, 999, 1344
BstFNI CGCG 1 cut(s) 798
BstHHI GCGC 1 cut(s) 769
BstKTI GATC 7 cut(s) 562, 581, 937, 1042, 1128, 1135, 1300
BstMAI GTCTC 4 cut(s) 120, 830, 918, 1046
BstMBI GATC 7 cut(s) 559, 578, 934, 1039, 1125, 1132, 1297
BstMWI GCNNNNNNNGC 4 cut(s) 294, 478, 1172, 1253
BstNI CCWGG 3 cut(s) 247, 401, 774
BstSCI CCNGG 4 cut(s) 245, 399, 772, 1195
BstSFI CTRYAG 3 cut(s) 228, 351, 1160
BstSLI GKGCMC 1 cut(s) 634
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 3 cut(s) 214, 322, 822
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 3 cut(s) 578, 1132, 1297
BstYI RGATCY 3 cut(s) 578, 1132, 1297
BsuI GTATCC 1 cut(s) 243
BsuRI GGCC 3 cut(s) 40, 949, 964
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 3 cut(s) 176, 999, 1344
BtsI GCAGTG 2 cut(s) 241, 295
BtsIMutI CAGTG 4 cut(s) 241, 295, 839, 1157
Cac8I GCNNGC 4 cut(s) 232, 808, 1164, 1245
CciI TCATGA 1 cut(s) 390
CfoI GCGC 1 cut(s) 769
Cfr13I GGNCC 6 cut(s) 304, 358, 383, 493, 962, 1283
CseI GACGC 1 cut(s) 1145
Csp6I GTAC 2 cut(s) 586, 1237
CviAII CATG 8 cut(s) 36, 265, 391, 815, 945, 1089, 1110, 1177
CviQI GTAC 2 cut(s) 586, 1237
DdeI CTNAG 6 cut(s) 30, 379, 507, 570, 758, 851
DpnI GATC 7 cut(s) 561, 580, 936, 1041, 1127, 1134, 1299
DpnII GATC 7 cut(s) 559, 578, 934, 1039, 1125, 1132, 1297
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 3 cut(s) 148, 178, 193
EarI CTCTTC 3 cut(s) 148, 178, 193
Eco130I CCWWGG 2 cut(s) 35, 1348
Eco32I GATATC 1 cut(s) 567
Eco47I GGWCC 5 cut(s) 304, 358, 383, 493, 1283
Eco57I CTGAAG 1 cut(s) 972
EcoO109I RGGNCCY 2 cut(s) 304, 358
EcoRII CCWGG 3 cut(s) 245, 399, 772
EcoRV GATATC 1 cut(s) 567
EcoT14I CCWWGG 2 cut(s) 35, 1348
EcoT22I ATGCAT 3 cut(s) 89, 270, 1090
ErhI CCWWGG 2 cut(s) 35, 1348
Esp3I CGTCTC 1 cut(s) 1046
FaeI CATG 8 cut(s) 39, 268, 394, 818, 948, 1092, 1113, 1180
FalI AAGNNNNNCTT 2 cut(s) 951, 983
FaqI GGGAC 3 cut(s) 232, 290, 1106
FatI CATG 8 cut(s) 35, 264, 390, 814, 944, 1088, 1109, 1176
FauNDI CATATG 1 cut(s) 451
FblI GTMKAC 1 cut(s) 1146
Fnu4HI GCNGC 4 cut(s) 12, 228, 336, 811
FokI GGATG 3 cut(s) 163, 1006, 1331
Fsp4HI GCNGC 4 cut(s) 12, 228, 336, 811
FspBI CTAG 2 cut(s) 614, 1357
GlaI GCGC 1 cut(s) 768
GluI GCNGC 4 cut(s) 12, 228, 336, 811
GsaI CCCAGC 1 cut(s) 1140
HaeIII GGCC 3 cut(s) 40, 949, 964
HapII CCGG 2 cut(s) 539, 1197
HgaI GACGC 1 cut(s) 1145
HhaI GCGC 1 cut(s) 769
Hin1I GRCGYC 1 cut(s) 1156
Hin1II CATG 8 cut(s) 39, 268, 394, 818, 948, 1092, 1113, 1180
Hin6I GCGC 1 cut(s) 767
HinP1I GCGC 1 cut(s) 767
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 3 cut(s) 220, 428, 745
HpaII CCGG 2 cut(s) 539, 1197
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 632, 1147
Hpy188I TCNGA 5 cut(s) 510, 564, 1207, 1279, 1297
Hpy188III TCNNGA 5 cut(s) 391, 671, 835, 1070, 1123
Hpy8I GTNNAC 2 cut(s) 632, 1147
HpyAV CCTTC 9 cut(s) 410, 830, 863, 948, 953, 980, 1271, 1274, 1329
HpyCH4III ACNGT 3 cut(s) 973, 1057, 1236
HpyCH4V TGCA 8 cut(s) 87, 230, 268, 313, 632, 782, 1088, 1162
HpyF10VI GCNNNNNNNGC 4 cut(s) 294, 478, 1172, 1253
HpyF3I CTNAG 6 cut(s) 30, 379, 507, 570, 758, 851
Hsp92I GRCGYC 1 cut(s) 1156
Hsp92II CATG 8 cut(s) 39, 268, 394, 818, 948, 1092, 1113, 1180
HspAI GCGC 1 cut(s) 767
Kzo9I GATC 7 cut(s) 559, 578, 934, 1039, 1125, 1132, 1297
Lsp1109I GCAGC 3 cut(s) 214, 322, 822
LweI GCATC 3 cut(s) 277, 984, 1075
MaeI CTAG 2 cut(s) 614, 1357
MaeIII GTNAC 4 cut(s) 456, 688, 792, 1352
MalI GATC 7 cut(s) 561, 580, 936, 1041, 1127, 1134, 1299
MboI GATC 7 cut(s) 559, 578, 934, 1039, 1125, 1132, 1297
MboII GAAGA 9 cut(s) 135, 165, 180, 339, 527, 569, 611, 661, 889
MflI RGATCY 3 cut(s) 578, 1132, 1297
MhlI GDGCHC 1 cut(s) 634
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 5 cut(s) 101, 259, 488, 856, 1323
MluNI TGGCCA 1 cut(s) 40
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 2 cut(s) 350, 971
Mox20I TGGCCA 1 cut(s) 40
Mph1103I ATGCAT 3 cut(s) 89, 270, 1090
MscI TGGCCA 1 cut(s) 40
MslI CAYNNNNRTG 2 cut(s) 273, 276
Msp20I TGGCCA 1 cut(s) 40
MspA1I CMGCKG 1 cut(s) 1140
MspI CCGG 2 cut(s) 539, 1197
MspR9I CCNGG 4 cut(s) 247, 401, 774, 1197
Mva1269I GAATGC 2 cut(s) 299, 313
MvaI CCWGG 3 cut(s) 247, 401, 774
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 4 cut(s) 294, 478, 1172, 1253
NciI CCSGG 1 cut(s) 1197
NcoI CCATGG 1 cut(s) 35
NdeI CATATG 1 cut(s) 451
NdeII GATC 7 cut(s) 559, 578, 934, 1039, 1125, 1132, 1297
NlaIII CATG 8 cut(s) 39, 268, 394, 818, 948, 1092, 1113, 1180
NlaIV GGNNCC 3 cut(s) 157, 306, 1340
NsiI ATGCAT 3 cut(s) 89, 270, 1090
PagI TCATGA 1 cut(s) 390
PctI GAATGC 2 cut(s) 299, 313
PfeI GAWTC 2 cut(s) 428, 745
PfoI TCCNGGA 1 cut(s) 245
PkrI GCNGC 4 cut(s) 13, 229, 337, 812
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PpuMI RGGWCCY 2 cut(s) 304, 358
PsiI TTATAA 2 cut(s) 374, 1118
Psp5II RGGWCCY 2 cut(s) 304, 358
Psp6I CCWGG 3 cut(s) 245, 399, 772
PspFI CCCAGC 1 cut(s) 1136
PspGI CCWGG 3 cut(s) 245, 399, 772
PspN4I GGNNCC 3 cut(s) 157, 306, 1340
PspPI GGNCC 6 cut(s) 304, 358, 383, 493, 962, 1283
PspPPI RGGWCCY 2 cut(s) 304, 358
PstI CTGCAG 2 cut(s) 232, 1164
PsuI RGATCY 3 cut(s) 578, 1132, 1297
PvuII CAGCTG 1 cut(s) 1140
RsaI GTAC 2 cut(s) 587, 1238
RsaNI GTAC 2 cut(s) 586, 1237
RseI CAYNNNNRTG 2 cut(s) 273, 276
SatI GCNGC 4 cut(s) 12, 228, 336, 811
Sau3AI GATC 7 cut(s) 559, 578, 934, 1039, 1125, 1132, 1297
Sau96I GGNCC 6 cut(s) 304, 358, 383, 493, 962, 1283
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 4 cut(s) 247, 401, 774, 1197
SduI GDGCHC 1 cut(s) 634
SfaNI GCATC 3 cut(s) 277, 984, 1075
SfcI CTRYAG 3 cut(s) 228, 351, 1160
SinI GGWCC 5 cut(s) 304, 358, 383, 493, 1283
SmiMI CAYNNNNRTG 2 cut(s) 273, 276
SmlI CTYRAG 1 cut(s) 1049
SmoI CTYRAG 1 cut(s) 1049
Sse9I AATT 5 cut(s) 101, 259, 488, 856, 1323
SsiI CCGC 3 cut(s) 297, 338, 798
SspI AATATT 1 cut(s) 67
SspMI CTAG 2 cut(s) 614, 1357
StyD4I CCNGG 4 cut(s) 245, 399, 772, 1195
StyI CCWWGG 2 cut(s) 35, 1348
TaaI ACNGT 3 cut(s) 973, 1057, 1236
TaqI TCGA 2 cut(s) 834, 941
TasI AATT 5 cut(s) 101, 259, 488, 856, 1323
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 2 cut(s) 428, 745
TscAI CASTG 4 cut(s) 241, 295, 846, 1157
TseI GCWGC 4 cut(s) 11, 227, 335, 810
TspDTI ATGAA 8 cut(s) 60, 165, 379, 407, 501, 890, 896, 1090
TspGWI ACGGA 1 cut(s) 307
TspRI CASTG 4 cut(s) 241, 295, 846, 1157
VneI GTGCAC 1 cut(s) 630
VpaK11BI GGWCC 5 cut(s) 304, 358, 383, 493, 1283
XcmI CCANNNNNNNNNTGG 1 cut(s) 590
XmiI GTMKAC 1 cut(s) 1146
XspI CTAG 2 cut(s) 614, 1357
Zsp2I ATGCAT 3 cut(s) 89, 270, 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.