RLG00000019647

D-glycerate 3-kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
54829678 .. 54833827
4150 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019647

Sequence Viewer

Length: 1167 bp
ATGCCAACCCACCTCTCAAAGTCTGGGACTCTTACTGCAGGCACTGGATGTTCCTGGATGCAAGACAATTCCATGCATCACAACGGTGCTGCTGACAGTGAATGTGGTGAGGGTCCATTGCAATCCGCGTTTCCAGCAAAGGCTGCTGAGATTTCTTCTATAGAGGACCTTTATGAATTTATAAGTTCAGGTCCATTGATGAACAAACTGGGTTTAGCCCCAGAAGCTGTGGCCGAGTCCATTGACAAGTGGTTGGCATATGGTTTACACCTGTGTCGGCTATTTCAGCTCAATGAATTGGACCTCTCAGTTCCTCAGAAAGTTAGGATATATCACTATTATCTTCCGGTCTTTTTTTGGTGTGAAGATCAGATATCTCAGCACAGATCCTTGTACAAAGATGGAGAAGATATACCTCCTCTAGTGATTGGGTTTAGTGCACCACAAGGTTGTGGAAAGACTACACTTGTCTTTGCTCTTGATTATCTTTTCAAAGTAACTGGCAGGAAGTCTGCCACAATATCCATTGATGACTTTTATTTGACAGCTGAGAATCAGGCTAAACTAAGAGAAGCGCATCCAGGAAATGCACTTTTAGAGTTACGTGGAAATGCTGGCAGCCATGATCTTCCATTCTCTGTGGCGACACTGACTGCTCTAAGCAATTTGAGTAAAGAAGGTATGAAGATGAAGCTACCCCGATATGACAAGTCTGCTTACAATGGAAAGGGGGACAGAGCTGATCCTTCGACATGGCCCGAGGTGGAAGGGCCGCTCACTGCTGTTCTATTTGAAGGTTGGATGCTTGGCTTCAAACCCGTTCCTGTGGAAGTTGTCAAAGCAGTCAATCCACAGCTAGAGACGGTAAATAAAAATCTTGAAGCTTATTATGATGCATGGGACAAGTTCATCAAAGCATGGATAGTCATCAAAATCAAAGATCCCAGCTGTGTCTACCAGTGGCGTCTGCAGGCAGAGATTGCCATGAGAGAGGCAGGAAACCCTGGAATGTCCGATGATGAGGTAAAGGATTTTGTTTCACGGTACTTGCCAGCATACAATGCTTACCTTCCTACCCTTTATGCCGAAGGACCAAAAGGGTCAGATCCAAAGCACCTCATCTTCGTAGAAATTGATGAGGGAAGGAATCCCATCCTTGGTAACTAG

Protein Analysis

389

Amino Acids

43.06

Weight (kDa)

5.29

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AccBSI CCGCTC 1 cut(s) 775
AccI GTMKAC 1 cut(s) 954
AccII CGCG 1 cut(s) 128
AciI CCGC 2 cut(s) 126, 773
AclWI GGATC 4 cut(s) 381, 737, 935, 1100
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 964
AfaI GTAC 2 cut(s) 395, 1046
AfiI CCNNNNNNNGG 1 cut(s) 1157
AgsI TTSAA 4 cut(s) 493, 794, 814, 881
AjnI CCWGG 3 cut(s) 53, 580, 1003
AleI CACNNNNGTG 1 cut(s) 84
AluBI AGCT 8 cut(s) 227, 289, 548, 694, 740, 856, 884, 948
AluI AGCT 8 cut(s) 227, 289, 548, 694, 740, 856, 884, 948
Alw21I GWGCWC 1 cut(s) 442
Alw26I GTCTC 1 cut(s) 854
Alw44I GTGCAC 1 cut(s) 438
AlwI GGATC 4 cut(s) 381, 737, 935, 1100
AlwNI CAGNNNCTG 2 cut(s) 44, 227
Ama87I CYCGRG 1 cut(s) 758
AoxI GGCC 3 cut(s) 231, 755, 770
ApaLI GTGCAC 1 cut(s) 438
ApeKI GCWGC 3 cut(s) 89, 143, 618
ApoI RAATTY 1 cut(s) 176
AspLEI GCGC 1 cut(s) 577
AspS9I GGNCC 7 cut(s) 113, 166, 191, 301, 756, 770, 1091
AsuHPI GGTGA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 758
AvaII GGWCC 5 cut(s) 113, 166, 191, 301, 1091
BaeGI GKGCMC 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 3 cut(s) 76, 130, 630
BccI CCATC 2 cut(s) 395, 1160
BciT130I CCWGG 3 cut(s) 55, 582, 1005
BcoDI GTCTC 1 cut(s) 854
BfaI CTAG 3 cut(s) 422, 857, 1165
BfmI CTRYAG 3 cut(s) 36, 159, 968
BisI GCNGC 4 cut(s) 90, 144, 619, 773
BlsI GCNGC 4 cut(s) 91, 145, 620, 774
Bme1390I CCNGG 3 cut(s) 55, 582, 1005
Bme18I GGWCC 5 cut(s) 113, 166, 191, 301, 1091
BmeT110I CYCGRG 1 cut(s) 758
BmgT120I GGNCC 7 cut(s) 113, 166, 191, 301, 756, 770, 1091
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 3 cut(s) 55, 582, 1005
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 5 cut(s) 48, 85, 586, 792, 883
BmuI ACTGGG 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 605
BsaBI GATNNNNATC 1 cut(s) 926
BsaHI GRCGYC 1 cut(s) 964
BsaJI CCNNGG 3 cut(s) 759, 1003, 1156
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 1157
Bse1I ACTGG 4 cut(s) 49, 213, 505, 958
Bse3DI GCAATG 1 cut(s) 116
Bse8I GATNNNNATC 1 cut(s) 926
BseBI CCWGG 3 cut(s) 55, 582, 1005
BseDI CCNNGG 3 cut(s) 759, 1003, 1156
BseGI GGATG 5 cut(s) 53, 63, 577, 807, 1152
BseJI GATNNNNATC 1 cut(s) 926
BseLI CCNNNNNNNGG 1 cut(s) 1157
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 5 cut(s) 138, 321, 329, 392, 540
BseNI ACTGG 4 cut(s) 49, 213, 505, 958
BseRI GAGGAG 1 cut(s) 408
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 3 cut(s) 76, 130, 630
BseYI CCCAGC 1 cut(s) 944
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 3 cut(s) 233, 757, 772
BsiHKAI GWGCWC 1 cut(s) 442
BsiHKCI CYCGRG 1 cut(s) 758
BsiSI CCGG 1 cut(s) 347
BslFI GGGAC 3 cut(s) 40, 746, 914
BslI CCNNNNNNNGG 1 cut(s) 1157
BsmAI GTCTC 1 cut(s) 854
BsmBI CGTCTC 1 cut(s) 854
BsmFI GGGAC 3 cut(s) 40, 746, 914
BsnI GGCC 3 cut(s) 233, 757, 772
BsoBI CYCGRG 1 cut(s) 758
Bsp1286I GDGCHC 1 cut(s) 442
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 6 cut(s) 367, 386, 625, 742, 940, 1105
BspACI CCGC 2 cut(s) 126, 773
BspANI GGCC 3 cut(s) 233, 757, 772
BspCNI CTCAG 5 cut(s) 139, 320, 328, 391, 541
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 114
BspMAI CTGCAG 2 cut(s) 40, 972
BspPI GGATC 4 cut(s) 381, 737, 935, 1100
BsrBI CCGCTC 1 cut(s) 775
BsrDI GCAATG 1 cut(s) 116
BsrGI TGTACA 1 cut(s) 393
BsrI ACTGG 4 cut(s) 49, 213, 505, 958
BssECI CCNNGG 3 cut(s) 759, 1003, 1156
BssMI GATC 6 cut(s) 367, 386, 625, 742, 940, 1105
BssNI GRCGYC 1 cut(s) 964
BssT1I CCWWGG 1 cut(s) 1156
Bst2UI CCWGG 3 cut(s) 55, 582, 1005
Bst4CI ACNGT 4 cut(s) 86, 98, 865, 1044
BstACI GRCGYC 1 cut(s) 964
BstAPI GCANNNNNTGC 3 cut(s) 143, 980, 1061
BstAUI TGTACA 1 cut(s) 393
BstBAI YACGTR 1 cut(s) 605
BstC8I GCNNGC 4 cut(s) 40, 616, 972, 1053
BstDEI CTNAG 7 cut(s) 147, 307, 315, 378, 549, 566, 659
BstF5I GGATG 5 cut(s) 53, 63, 577, 807, 1152
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 577
BstKTI GATC 6 cut(s) 370, 389, 628, 745, 943, 1108
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 6 cut(s) 367, 386, 625, 742, 940, 1105
BstMWI GCNNNNNNNGC 6 cut(s) 134, 143, 224, 286, 980, 1061
BstNI CCWGG 3 cut(s) 55, 582, 1005
BstSCI CCNGG 3 cut(s) 53, 580, 1003
BstSFI CTRYAG 3 cut(s) 36, 159, 968
BstSLI GKGCMC 1 cut(s) 442
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 3 cut(s) 76, 130, 630
BstX2I RGATCY 3 cut(s) 386, 940, 1105
BstYI RGATCY 3 cut(s) 386, 940, 1105
BsuRI GGCC 3 cut(s) 233, 757, 772
BtsCI GGATG 5 cut(s) 53, 63, 577, 807, 1152
BtsI GCAGTG 1 cut(s) 777
BtsIMutI CAGTG 5 cut(s) 42, 103, 647, 777, 965
Cac8I GCNNGC 4 cut(s) 40, 616, 972, 1053
CaiI CAGNNNCTG 2 cut(s) 44, 227
CfoI GCGC 1 cut(s) 577
Cfr13I GGNCC 7 cut(s) 113, 166, 191, 301, 756, 770, 1091
CseI GACGC 1 cut(s) 953
Csp6I GTAC 2 cut(s) 394, 1045
CviAII CATG 6 cut(s) 73, 623, 753, 897, 918, 985
CviQI GTAC 2 cut(s) 394, 1045
DdeI CTNAG 7 cut(s) 147, 307, 315, 378, 549, 566, 659
DpnI GATC 6 cut(s) 369, 388, 627, 744, 942, 1107
DpnII GATC 6 cut(s) 367, 386, 625, 742, 940, 1105
EaeI YGGCCR 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 1156
Eco32I GATATC 1 cut(s) 375
Eco47I GGWCC 5 cut(s) 113, 166, 191, 301, 1091
Eco88I CYCGRG 1 cut(s) 758
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 3 cut(s) 53, 580, 1003
EcoRV GATATC 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 1156
EcoT22I ATGCAT 2 cut(s) 78, 898
ErhI CCWWGG 1 cut(s) 1156
Esp3I CGTCTC 1 cut(s) 854
FaeI CATG 6 cut(s) 76, 626, 756, 900, 921, 988
FaqI GGGAC 3 cut(s) 40, 746, 914
FatI CATG 6 cut(s) 72, 622, 752, 896, 917, 984
FauNDI CATATG 1 cut(s) 259
FblI GTMKAC 1 cut(s) 954
Fnu4HI GCNGC 4 cut(s) 90, 144, 619, 773
FokI GGATG 5 cut(s) 60, 70, 564, 814, 1139
Fsp4HI GCNGC 4 cut(s) 90, 144, 619, 773
FspBI CTAG 3 cut(s) 422, 857, 1165
GlaI GCGC 1 cut(s) 576
GluI GCNGC 4 cut(s) 90, 144, 619, 773
GsaI CCCAGC 1 cut(s) 948
HaeIII GGCC 3 cut(s) 233, 757, 772
HapII CCGG 1 cut(s) 347
HgaI GACGC 1 cut(s) 953
HhaI GCGC 1 cut(s) 577
Hin1I GRCGYC 1 cut(s) 964
Hin1II CATG 6 cut(s) 76, 626, 756, 900, 921, 988
Hin6I GCGC 1 cut(s) 575
HinP1I GCGC 1 cut(s) 575
HindIII AAGCTT 1 cut(s) 882
HinfI GANTC 4 cut(s) 28, 236, 553, 1147
HpaII CCGG 1 cut(s) 347
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 3 cut(s) 266, 440, 955
Hpy188I TCNGA 4 cut(s) 318, 372, 1015, 1105
Hpy188III TCNNGA 2 cut(s) 479, 878
Hpy8I GTNNAC 3 cut(s) 266, 440, 955
HpyAV CCTTC 7 cut(s) 671, 756, 761, 788, 1079, 1082, 1137
HpyCH4III ACNGT 4 cut(s) 86, 98, 865, 1044
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 8 cut(s) 38, 61, 76, 121, 440, 590, 896, 970
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 143, 224, 286, 980, 1061
HpyF3I CTNAG 7 cut(s) 147, 307, 315, 378, 549, 566, 659
HpySE526I ACGT 1 cut(s) 604
Hsp92I GRCGYC 1 cut(s) 964
Hsp92II CATG 6 cut(s) 76, 626, 756, 900, 921, 988
HspAI GCGC 1 cut(s) 575
Kzo9I GATC 6 cut(s) 367, 386, 625, 742, 940, 1105
Lsp1109I GCAGC 3 cut(s) 76, 130, 630
LweI GCATC 5 cut(s) 48, 85, 586, 792, 883
MaeI CTAG 3 cut(s) 422, 857, 1165
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 3 cut(s) 496, 600, 1160
MalI GATC 6 cut(s) 369, 388, 627, 744, 942, 1107
MbiI CCGCTC 1 cut(s) 775
MboI GATC 6 cut(s) 367, 386, 625, 742, 940, 1105
MboII GAAGA 7 cut(s) 147, 335, 377, 419, 620, 697, 1114
MflI RGATCY 3 cut(s) 386, 940, 1105
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 5 cut(s) 67, 176, 296, 664, 1131
MlyI GAGTC 2 cut(s) 22, 245
MmeI TCCRAC 1 cut(s) 779
Mph1103I ATGCAT 2 cut(s) 78, 898
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 2 cut(s) 548, 948
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 3 cut(s) 55, 582, 1005
MvaI CCWGG 3 cut(s) 55, 582, 1005
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 6 cut(s) 134, 143, 224, 286, 980, 1061
NdeI CATATG 1 cut(s) 259
NdeII GATC 6 cut(s) 367, 386, 625, 742, 940, 1105
NlaIII CATG 6 cut(s) 76, 626, 756, 900, 921, 988
NlaIV GGNNCC 1 cut(s) 114
NmeAIII GCCGAG 1 cut(s) 259
NsiI ATGCAT 2 cut(s) 78, 898
OliI CACNNNNGTG 1 cut(s) 84
PfeI GAWTC 2 cut(s) 553, 1147
PfoI TCCNGGA 2 cut(s) 53, 580
PkrI GCNGC 4 cut(s) 91, 145, 620, 774
PleI GAGTC 2 cut(s) 22, 244
PpsI GAGTC 2 cut(s) 22, 244
Ppu21I YACGTR 1 cut(s) 605
PpuMI RGGWCCY 1 cut(s) 166
PsiI TTATAA 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 3 cut(s) 53, 580, 1003
PspFI CCCAGC 1 cut(s) 944
PspGI CCWGG 3 cut(s) 53, 580, 1003
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 7 cut(s) 113, 166, 191, 301, 756, 770, 1091
PspPPI RGGWCCY 1 cut(s) 166
PstI CTGCAG 2 cut(s) 40, 972
PstNI CAGNNNCTG 2 cut(s) 44, 227
PsuI RGATCY 3 cut(s) 386, 940, 1105
PvuII CAGCTG 2 cut(s) 548, 948
RsaI GTAC 2 cut(s) 395, 1046
RsaNI GTAC 2 cut(s) 394, 1045
RseI CAYNNNNRTG 1 cut(s) 84
SatI GCNGC 4 cut(s) 90, 144, 619, 773
Sau3AI GATC 6 cut(s) 367, 386, 625, 742, 940, 1105
Sau96I GGNCC 7 cut(s) 113, 166, 191, 301, 756, 770, 1091
SchI GAGTC 2 cut(s) 22, 245
ScrFI CCNGG 3 cut(s) 55, 582, 1005
SduI GDGCHC 1 cut(s) 442
SfaNI GCATC 5 cut(s) 48, 85, 586, 792, 883
SfcI CTRYAG 3 cut(s) 36, 159, 968
SinI GGWCC 5 cut(s) 113, 166, 191, 301, 1091
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 5 cut(s) 67, 176, 296, 664, 1131
SsiI CCGC 2 cut(s) 126, 773
SspMI CTAG 3 cut(s) 422, 857, 1165
StyD4I CCNGG 3 cut(s) 53, 580, 1003
StyI CCWWGG 1 cut(s) 1156
TaaI ACNGT 4 cut(s) 86, 98, 865, 1044
TaiI ACGT 1 cut(s) 607
TaqI TCGA 1 cut(s) 749
TasI AATT 5 cut(s) 67, 176, 296, 664, 1131
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 775
TfiI GAWTC 2 cut(s) 553, 1147
TscAI CASTG 5 cut(s) 49, 103, 654, 784, 965
TseI GCWGC 3 cut(s) 89, 143, 618
TspDTI ATGAA 6 cut(s) 189, 215, 309, 698, 704, 898
TspRI CASTG 5 cut(s) 49, 103, 654, 784, 965
VneI GTGCAC 1 cut(s) 438
VpaK11BI GGWCC 5 cut(s) 113, 166, 191, 301, 1091
XapI RAATTY 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 954
XspI CTAG 3 cut(s) 422, 857, 1165
Zsp2I ATGCAT 2 cut(s) 78, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.