Rroxscaffold_5G00336090

DNA damage-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003841
Physical Location & Seq
Forward (+)
3804847 .. 3811031
6185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336090.1

Sequence Viewer

Length: 357 bp
ATGTCGAGAGCGTTGTGGATTGTTGAGGCTTTTAGATCAACGTTACAAGGGCATTGCTCATGGAGTTGGTCAATCGGAGATATTGAGTCGAATACACGTAGCTCCTATCAAGATTGGAAATTATGGCTCGGACAGAGAGTGTTCAAGCGAGGCGATGAAGTTGGGCCTTCTACTTCTGCGCTCGGTGTCAAAGATGATGATTTATTAATGATGGTACCCAATGCCGTGTCTAGTGCTTCCAGCAATGCACCGAGCTTCAATCCGGATGGGTCTGCTGCAAATCCACTAGCTTTCCAGCAGCAGATTAGGAATGATTCTAATGTGATAGCACAGTTGTTTCGAGTGATCCCGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease UBA ubiquitin

Protein Analysis

118

Amino Acids

13.04

Weight (kDa)

5.66

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 214
AccB1I GGYRCC 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 262
AclI AACGTT 1 cut(s) 41
AclWI GGATC 1 cut(s) 340
AfaI GTAC 1 cut(s) 216
AflIII ACRYGT 1 cut(s) 95
AgsI TTSAA 2 cut(s) 145, 259
AluBI AGCT 3 cut(s) 102, 255, 290
AluI AGCT 3 cut(s) 102, 255, 290
AlwI GGATC 1 cut(s) 340
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 275, 298
AseI ATTAAT 1 cut(s) 206
Asp718I GGTACC 1 cut(s) 214
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 164
BanI GGYRCC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 262, 310
BccI CCATC 2 cut(s) 205, 260
BceAI ACGGC 1 cut(s) 209
BfaI CTAG 2 cut(s) 231, 287
BisI GCNGC 2 cut(s) 276, 299
BlsI GCNGC 2 cut(s) 277, 300
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 216
BsaAI YACGTR 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 262
Bse3DI GCAATG 2 cut(s) 52, 250
BseAI TCCGGA 1 cut(s) 262
BseGI GGATG 1 cut(s) 271
BseMI GCAATG 2 cut(s) 52, 250
BseXI GCAGC 2 cut(s) 262, 310
BshFI GGCC 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 263
BsnI GGCC 1 cut(s) 166
Bsp13I TCCGGA 1 cut(s) 262
Bsp143I GATC 2 cut(s) 35, 345
BspANI GGCC 1 cut(s) 166
BspEI TCCGGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 214
BsrDI GCAATG 2 cut(s) 52, 250
BssMI GATC 2 cut(s) 35, 345
Bst4CI ACNGT 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 98
BstF5I GGATG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 38, 348
BstMBI GATC 2 cut(s) 35, 345
BstV1I GCAGC 2 cut(s) 262, 310
BsuRI GGCC 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 1 cut(s) 271
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 215
CviAII CATG 1 cut(s) 60
CviJI RGCY 6 cut(s) 29, 102, 127, 166, 255, 290
CviKI_1 RGCY 6 cut(s) 29, 102, 127, 166, 255, 290
CviQI GTAC 1 cut(s) 215
DpnI GATC 2 cut(s) 37, 347
DpnII GATC 2 cut(s) 35, 345
FaeI CATG 1 cut(s) 63
FaiI YATR 2 cut(s) 61, 124
FatI CATG 1 cut(s) 59
Fnu4HI GCNGC 2 cut(s) 276, 299
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 2 cut(s) 276, 299
FspBI CTAG 2 cut(s) 231, 287
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 276, 299
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 263
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 63
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 2 cut(s) 86, 314
HpaII CCGG 1 cut(s) 263
Hpy188I TCNGA 2 cut(s) 77, 131
Hpy188III TCNNGA 4 cut(s) 6, 110, 263, 349
HpyAV CCTTC 1 cut(s) 177
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 2 cut(s) 41, 97
HpyCH4V TGCA 2 cut(s) 248, 278
HpySE526I ACGT 2 cut(s) 41, 97
Hsp92II CATG 1 cut(s) 63
HspAI GCGC 1 cut(s) 179
Kpn2I TCCGGA 1 cut(s) 262
KpnI GGTACC 1 cut(s) 218
Kzo9I GATC 2 cut(s) 35, 345
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 3 cut(s) 253, 276, 308
Lsp1109I GCAGC 2 cut(s) 262, 310
MaeI CTAG 2 cut(s) 231, 287
MaeII ACGT 2 cut(s) 41, 97
MaeIII GTNAC 1 cut(s) 42
MalI GATC 2 cut(s) 37, 347
MboI GATC 2 cut(s) 35, 345
MluCI AATT 2 cut(s) 119, 352
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 2 cut(s) 19, 143
MroI TCCGGA 1 cut(s) 262
MseI TTAA 1 cut(s) 206
MspI CCGG 1 cut(s) 263
NdeII GATC 2 cut(s) 35, 345
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 2 cut(s) 277, 300
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 98
PshBI ATTAAT 1 cut(s) 206
Psp1406I AACGTT 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 164
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 2 cut(s) 276, 299
Sau3AI GATC 2 cut(s) 35, 345
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 95
SetI ASST 5 cut(s) 44, 100, 104, 257, 292
Sse9I AATT 2 cut(s) 119, 352
SspMI CTAG 2 cut(s) 231, 287
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 2 cut(s) 44, 100
TaqI TCGA 3 cut(s) 5, 89, 340
TasI AATT 2 cut(s) 119, 352
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TseI GCWGC 2 cut(s) 275, 298
TspDTI ATGAA 1 cut(s) 171
VspI ATTAAT 1 cut(s) 206
XspI CTAG 2 cut(s) 231, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.