Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007160

Physical Location & Seq

Genomic Coordinates Reverse (-)

30422050 .. 30424152

Gene Structure 2103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGATTCGCGGCAGAGGCTCGTGGTCCGGATTATCGACCCGGTTGAAGCTTTACAGGACCCGACGTTTCTGCACAAAAGGAGAGAATAAACTCGAGAAGACGGAATCTAGCGTTGCTCATCACAGCGAGACTGAATCTAGTGTTTCTCGCTACGATGAGACCTATAAGAAACTCGATAAGCTCGATTTCGTGACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAATTTGGGTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTGTAGCTGTGTATCTGGTTGCTCAATATGCTCGCCGGAAAATGAAGATCATGGATGCTGAACTTGGAGAGAAGAAAAGGAAAGAAGAAGAAAAGAAAGAGAAAGAAGAAGCTGAACAAAAGGCATTACAAGTAGAGGCAGCAACCAAGTCTCACGAAGAGCTAATGGAGATGAGACAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAAATTGTTTTGGAAACCAAGAAACCTTCAGGGAATGCTCCAACCAAAACCCAAGAAGATCAATCAACTAAACTCTCCCCAAAAGAAGTATCACAGCCAGAAAAAGAACACAAGGGCAATGTACAGAAACCAGGTGATGGACCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Musclin

Protein Analysis

214

Amino Acids

24.62

Weight (kDa)

9.27

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80700 AT1G80980 AT1G80980
fragaria_vesca	FvH4_5g29190 FvH4_5g29190 FvH4_5g29190 FvH4_5g29190
malus_domestica	MD03G1160000.v1.1 MD17G1221100.v1.1
prunus_persica	Prupe.1G199000_v2.0.a1 Prupe.7G069400_v2.0.a1
pyrus_communis	pycom17g22550
rosa_chinensis	RchiOBHm_Chr7g0221831
rosa_laevigata	RLG00000002111
rosa_multiflora	Rmu_sc0005834.1_g000012 Rmu_sc0034732.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237590 Rroxscaffold_3G00237660
rosa_rugosa	Rorug07G0204100 Rorug07G0204100
rosa_samantha	Rh7AG344900 Rh7BG335400 Rh7CG362300 Rh7DG342500
rosa_wichuraiana	Rw7G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	632
AccII	CGCG	1 cut(s)	9
AccIII	TCCGGA	1 cut(s)	26
AciI	CCGC	2 cut(s)	9, 195
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	1 cut(s)	632
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	5 cut(s)	49, 181, 293, 398, 448
AluI	AGCT	5 cut(s)	49, 181, 293, 398, 448
Alw26I	GTCTC	6 cut(s)	122, 152, 441, 454, 460, 479
AlwNI	CAGNNNCTG	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	92
Aor13HI	TCCGGA	1 cut(s)	26
ApeKI	GCWGC	2 cut(s)	197, 425
ApoI	RAATTY	1 cut(s)	236
AspS9I	GGNCC	3 cut(s)	24, 57, 635
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	641
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	3 cut(s)	24, 57, 635
BauI	CACGAG	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	184, 437
BccI	CCATC	2 cut(s)	292, 626
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BciT130I	CCWGG	1 cut(s)	627
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	6 cut(s)	122, 152, 441, 454, 460, 479
BfaI	CTAG	2 cut(s)	108, 138
BfmI	CTRYAG	1 cut(s)	288
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	3 cut(s)	10, 198, 426
BlsI	GCNGC	3 cut(s)	11, 199, 427
Bme1390I	CCNGG	2 cut(s)	40, 627
Bme18I	GGWCC	3 cut(s)	24, 57, 635
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	3 cut(s)	24, 57, 635
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	2 cut(s)	40, 627
BmrI	ACTGGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	479
BpiI	GAAGAC	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse1I	ACTGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	619
BseAI	TCCGGA	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	627
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMI	GCAATG	1 cut(s)	619
BseNI	ACTGG	1 cut(s)	474
BseXI	GCAGC	2 cut(s)	184, 437
BsgI	GTGCAG	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	3 cut(s)	27, 40, 322
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmAI	GTCTC	6 cut(s)	122, 152, 441, 454, 460, 479
BsmI	GAATGC	1 cut(s)	535
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	26
Bsp1407I	TGTACA	1 cut(s)	616
Bsp143I	GATC	3 cut(s)	204, 333, 553
BspACI	CCGC	2 cut(s)	9, 195
BspEI	TCCGGA	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	59
BspQI	GCTCTTC	1 cut(s)	438
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	619
BsrGI	TGTACA	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	474
BssMI	GATC	3 cut(s)	204, 333, 553
BssSI	CACGAG	1 cut(s)	19
Bst2BI	CACGAG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	627
Bst6I	CTCTTC	2 cut(s)	438, 477
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	616
BstC8I	GCNNGC	2 cut(s)	281, 319
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	3 cut(s)	207, 336, 556
BstMAI	GTCTC	6 cut(s)	122, 152, 441, 454, 460, 479
BstMBI	GATC	3 cut(s)	204, 333, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 259, 314
BstNI	CCWGG	1 cut(s)	627
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	38, 625
BstSFI	CTRYAG	1 cut(s)	288
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	184, 437
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	213, 640
Cac8I	GCNNGC	2 cut(s)	281, 319
CaiI	CAGNNNCTG	1 cut(s)	469
Cfr13I	GGNCC	3 cut(s)	24, 57, 635
CsiI	ACCWGGT	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	2 cut(s)	254, 337
CviJI	RGCY	7 cut(s)	18, 49, 181, 293, 398, 448, 592
CviKI_1	RGCY	7 cut(s)	18, 49, 181, 293, 398, 448, 592
CviQI	GTAC	1 cut(s)	617
DpnI	GATC	3 cut(s)	206, 335, 555
DpnII	GATC	3 cut(s)	204, 333, 553
Eam1104I	CTCTTC	2 cut(s)	438, 477
EarI	CTCTTC	2 cut(s)	438, 477
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	3 cut(s)	24, 57, 635
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	625
FaeI	CATG	2 cut(s)	257, 340
FaiI	YATR	4 cut(s)	165, 255, 315, 338
FatI	CATG	2 cut(s)	253, 336
Fnu4HI	GCNGC	3 cut(s)	10, 198, 426
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	3 cut(s)	10, 198, 426
FspBI	CTAG	2 cut(s)	108, 138
GluI	GCNGC	3 cut(s)	10, 198, 426
HapII	CCGG	3 cut(s)	27, 40, 322
Hin1II	CATG	2 cut(s)	257, 340
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	3 cut(s)	4, 104, 134
HpaII	CCGG	3 cut(s)	27, 40, 322
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188III	TCNNGA	4 cut(s)	27, 94, 190, 440
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	66
HpyAV	CCTTC	1 cut(s)	531
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	72, 262
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 259, 314
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	257, 340
Kpn2I	TCCGGA	1 cut(s)	26
Kzo9I	GATC	3 cut(s)	204, 333, 553
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	1 cut(s)	538
Lsp1109I	GCAGC	2 cut(s)	184, 437
LweI	GCATC	1 cut(s)	331
MabI	ACCWGGT	1 cut(s)	625
MaeI	CTAG	2 cut(s)	108, 138
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	206, 335, 555
MboI	GATC	3 cut(s)	204, 333, 553
MflI	RGATCY	1 cut(s)	204
MluCI	AATT	3 cut(s)	236, 263, 498
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	2 cut(s)	8, 415
MroI	TCCGGA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	3 cut(s)	27, 40, 322
MspR9I	CCNGG	2 cut(s)	40, 627
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	627
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	15, 259, 314
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	3 cut(s)	204, 333, 553
NlaIII	CATG	2 cut(s)	257, 340
NlaIV	GGNNCC	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	257
PaeR7I	CTCGAG	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	535
PfeI	GAWTC	3 cut(s)	4, 104, 134
PflMI	CCANNNNNTGG	1 cut(s)	632
PkrI	GCNGC	3 cut(s)	11, 199, 427
PpuMI	RGGWCCY	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	3 cut(s)	24, 57, 635
PspPPI	RGGWCCY	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
SapI	GCTCTTC	1 cut(s)	438
SatI	GCNGC	3 cut(s)	10, 198, 426
Sau3AI	GATC	3 cut(s)	204, 333, 553
Sau96I	GGNCC	3 cut(s)	24, 57, 635
ScrFI	CCNGG	2 cut(s)	40, 627
SexAI	ACCWGGT	1 cut(s)	625
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	288
Sfr274I	CTCGAG	1 cut(s)	92
SinI	GGWCC	3 cut(s)	24, 57, 635
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	3 cut(s)	236, 263, 498
SsiI	CCGC	2 cut(s)	9, 195
SspMI	CTAG	2 cut(s)	108, 138
StyD4I	CCNGG	2 cut(s)	38, 625
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	5 cut(s)	35, 93, 174, 183, 480
TasI	AATT	3 cut(s)	236, 263, 498
TatI	WGTACW	1 cut(s)	616
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	4, 104, 134
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	197, 425
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	256, 344
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	632
VpaK11BI	GGWCC	3 cut(s)	24, 57, 635
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	257
XhoI	CTCGAG	1 cut(s)	92
XspI	CTAG	2 cut(s)	108, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.