RchiOBHm_Chr7g0221831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007160
Physical Location & Seq
Forward (+)
42911437 .. 42915547
4111 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19849

Sequence Viewer

Length: 558 bp
ATGCTCTTCACTGACCCGCCCAAGAAAAAGAAATTTGGGCTTGATTTCCACCTGGTACAACTATTCTTTGCTTGTATGCCTTCCTTGGCTGTATATCTGGTAGCTCAATATGCTCGCTATGATATGAGAAAAATGGAAGCAGAACTGGAGCAGAAAAAGAAGAAACAAGAAGAAGAGAAAGTGGAAGAAATAGAACTAAATGCTACTAAAGAAAAAGAAGCAAGATCGGTTCCGGAGCTTTCGGAGGTGAGAGAGAGATTAGAAAAACTTGAAGAAACTGTGAAGGGAATTGCGGCTGAGACGAAGAAACAAACCGTCAATGGCCAAGCAAAAGGCCATGAAGGTGACAGTGCAAAGAAAAGTTTTGGAACTGAGGCAAGTACCCTGAGTAGTTCAGAATCTAGCAAGCCAGTTGAGAAAGACCCCCTCAAACAGGATTCTGTAGGGCCAAGGCCAGCTGCAAGCAAGGATAGATTAACAGTGGCAGCAACAGTTCCTAATGCTTCTCCAGAGGGCAACATCCAAGATGGCGGGCCTTCTCAAGATGCTAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Musclin

Protein Analysis

185

Amino Acids

20.48

Weight (kDa)

6.78

Isoelectric Point (pI)

62.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 3 cut(s) 17, 293, 531
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 1 cut(s) 32
AfaI GTAC 2 cut(s) 57, 382
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 1 cut(s) 272
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 3 cut(s) 104, 238, 458
AluI AGCT 3 cut(s) 104, 238, 458
Alw26I GTCTC 1 cut(s) 293
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 5 cut(s) 322, 334, 446, 452, 533
ApeKI GCWGC 2 cut(s) 458, 485
ApoI RAATTY 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 446, 533
AsuHPI GGTGA 2 cut(s) 259, 356
BalI TGGCCA 1 cut(s) 324
BbvI GCAGC 2 cut(s) 445, 497
BccI CCATC 1 cut(s) 521
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 1 cut(s) 441
BisI GCNGC 3 cut(s) 294, 459, 486
BlsI GCNGC 3 cut(s) 295, 460, 487
Bme1390I CCNGG 1 cut(s) 53
BmgT120I GGNCC 2 cut(s) 446, 533
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 535
BpmI CTGGAG 2 cut(s) 167, 492
BpuEI CTTGAG 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 84, 449
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 2 cut(s) 150, 410
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 2 cut(s) 84, 449
BseGI GGATG 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMII CTCAG 3 cut(s) 288, 363, 377
BseNI ACTGG 2 cut(s) 150, 410
BseXI GCAGC 2 cut(s) 445, 497
BshFI GGCC 5 cut(s) 324, 336, 448, 454, 535
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 1 cut(s) 293
BsmBI CGTCTC 1 cut(s) 293
BsnI GGCC 5 cut(s) 324, 336, 448, 454, 535
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 224
BspACI CCGC 3 cut(s) 17, 293, 531
BspANI GGCC 5 cut(s) 324, 336, 448, 454, 535
BspCNI CTCAG 3 cut(s) 289, 364, 378
BspEI TCCGGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 231
BspQI GCTCTTC 1 cut(s) 11
BsrI ACTGG 2 cut(s) 150, 410
BssECI CCNNGG 2 cut(s) 84, 449
BssMI GATC 1 cut(s) 224
BssT1I CCWWGG 2 cut(s) 84, 449
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 5 cut(s) 280, 316, 350, 481, 493
Bst6I CTCTTC 2 cut(s) 11, 168
BstC8I GCNNGC 5 cut(s) 115, 407, 456, 463, 533
BstDEI CTNAG 3 cut(s) 297, 372, 386
BstENI CCTNNNNNAGG 1 cut(s) 431
BstF5I GGATG 1 cut(s) 519
BstKTI GATC 1 cut(s) 227
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 1 cut(s) 224
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 2 cut(s) 445, 497
BsuRI GGCC 5 cut(s) 324, 336, 448, 454, 535
BtsCI GGATG 1 cut(s) 519
BtsIMutI CAGTG 3 cut(s) 9, 355, 486
Cac8I GCNNGC 5 cut(s) 115, 407, 456, 463, 533
Cfr13I GGNCC 2 cut(s) 446, 533
CsiI ACCWGGT 1 cut(s) 51
Csp6I GTAC 2 cut(s) 56, 381
CviAII CATG 1 cut(s) 338
CviQI GTAC 2 cut(s) 56, 381
DdeI CTNAG 3 cut(s) 297, 372, 386
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 11, 168
EarI CTCTTC 2 cut(s) 11, 168
Eco130I CCWWGG 2 cut(s) 84, 449
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 84, 449
ErhI CCWWGG 2 cut(s) 84, 449
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 1 cut(s) 341
FaiI YATR 6 cut(s) 77, 94, 111, 120, 125, 339
FatI CATG 1 cut(s) 337
FauI CCCGC 2 cut(s) 24, 524
Fnu4HI GCNGC 3 cut(s) 294, 459, 486
FokI GGATG 1 cut(s) 506
Fsp4HI GCNGC 3 cut(s) 294, 459, 486
FspBI CTAG 1 cut(s) 402
GluI GCNGC 3 cut(s) 294, 459, 486
GsuI CTGGAG 2 cut(s) 167, 492
HaeIII GGCC 5 cut(s) 324, 336, 448, 454, 535
HapII CCGG 1 cut(s) 233
Hin1II CATG 1 cut(s) 341
HinfI GANTC 2 cut(s) 398, 437
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 259, 356
Hpy188I TCNGA 2 cut(s) 244, 397
Hpy188III TCNNGA 3 cut(s) 233, 509, 542
HpyAV CCTTC 4 cut(s) 90, 277, 335, 546
HpyCH4III ACNGT 5 cut(s) 280, 316, 350, 481, 493
HpyCH4V TGCA 2 cut(s) 353, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 297, 372, 386
Hsp92II CATG 1 cut(s) 341
Kpn2I TCCGGA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 224
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 2 cut(s) 148, 235
Lsp1109I GCAGC 2 cut(s) 445, 497
LweI GCATC 1 cut(s) 535
MabI ACCWGGT 1 cut(s) 51
MaeI CTAG 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 6 cut(s) 172, 182, 185, 197, 284, 316
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 2 cut(s) 32, 288
MluNI TGGCCA 1 cut(s) 324
MnlI CCTC 4 cut(s) 238, 367, 437, 505
Mox20I TGGCCA 1 cut(s) 324
MroI TCCGGA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 324
MseI TTAA 1 cut(s) 476
MslI CAYNNNNRTG 1 cut(s) 342
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 1 cut(s) 224
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 11
PfeI GAWTC 2 cut(s) 398, 437
PkrI GCNGC 3 cut(s) 295, 460, 487
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 2 cut(s) 446, 533
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 2 cut(s) 57, 382
RsaNI GTAC 2 cut(s) 56, 381
RseI CAYNNNNRTG 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 476
SatI GCNGC 3 cut(s) 294, 459, 486
Sau3AI GATC 1 cut(s) 224
Sau96I GGNCC 2 cut(s) 446, 533
ScrFI CCNGG 1 cut(s) 53
SetI ASST 6 cut(s) 54, 106, 240, 249, 346, 460
SexAI ACCWGGT 1 cut(s) 51
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
Sse9I AATT 2 cut(s) 32, 288
SsiI CCGC 3 cut(s) 17, 293, 531
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 2 cut(s) 84, 449
TaaI ACNGT 5 cut(s) 280, 316, 350, 481, 493
TasI AATT 2 cut(s) 32, 288
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 398, 437
Tru1I TTAA 1 cut(s) 476
Tru9I TTAA 1 cut(s) 476
TscAI CASTG 3 cut(s) 16, 355, 486
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 2 cut(s) 458, 485
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 354
TspRI CASTG 3 cut(s) 16, 355, 486
XagI CCTNNNNNAGG 1 cut(s) 431
XapI RAATTY 1 cut(s) 32
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.