Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007160

Physical Location & Seq

Genomic Coordinates Forward (+)

34918527 .. 34923528

Gene Structure 5002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG335400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTACCACTGCAGCCGAAGATTGCAAGCAACGTTTTGGAGCACACAAACCTGGGTCCGATTCCAGAAGCAACCATTTTGCTCCAAACCCCCCCATGGTCTGACTGCATACGACGAGTCGTTGAAGAAGCTTGACAAGCTAGACTTCTTGACTGCCGCTAAAATGCTCTTCACTGACCCGCCCAAGAAAAAGAAATTTGGGCTTGATTTCCATCTGGTACAACTATTCTTTGCTTGTATGCCCTCCTTGGCCGTATATCTGGTAGCTCAATATGCTCGCTATGATATGAGAAAAATGGAAGCAGAACTGGAGCAGAAAAAGAAGAAACAAGAAGAAGAGAAAGTGGAAGAAATAGAACTAAATGCTACTAAAGAAAAAGAAGCAAGATCGGTTCCGGAGCTTTCGGAGGTGAGAGAGAGATTAGAAAAACTTGAAGAAACTGTGAAGGGAATTGCGGCTGAGACGAAGAAACAAACCGTCAATGGCCAAGCAAAAGGCCATGAAGGTGACAGTGCAAAGAAAAGTTTTGGAACTGAGGCAAGTACCCTGAGTAGTTCAGAATCTAGCAAGCCAGTTGAGAAAGACCCCCTCAAACAGGATTCTGTAAGGCCAAGGCCAGCTGCAAGCAAGGATAGATTAACCGCGGCAGCAACAGTTCCTAATGCTTCTCCAGAGGGCAAGATCCAAGATGGCGGGCCTTCTCAGGATGCTAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Musclin

Protein Analysis

239

Amino Acids

26.95

Weight (kDa)

9.13

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80700 AT1G80980 AT1G80980
fragaria_vesca	FvH4_5g29190 FvH4_5g29190 FvH4_5g29190 FvH4_5g29190
malus_domestica	MD03G1160000.v1.1 MD17G1221100.v1.1
prunus_persica	Prupe.1G199000_v2.0.a1 Prupe.7G069400_v2.0.a1
pyrus_communis	pycom17g22550
rosa_chinensis	RchiOBHm_Chr7g0221831
rosa_laevigata	RLG00000002111
rosa_multiflora	Rmu_sc0005834.1_g000012 Rmu_sc0034732.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237590 Rroxscaffold_3G00237660
rosa_rugosa	Rorug07G0204100 Rorug07G0204100
rosa_samantha	Rh7AG344900 Rh7BG335400 Rh7CG362300 Rh7DG342500
rosa_wichuraiana	Rw7G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	644
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	6 cut(s)	156, 179, 455, 642, 644, 693
AclI	AACGTT	1 cut(s)	32
AclWI	GGATC	1 cut(s)	676
AcoI	YGGCCR	2 cut(s)	249, 484
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	3 cut(s)	5, 219, 544
AfiI	CCNNNNNNNGG	2 cut(s)	95, 595
AgsI	TTSAA	2 cut(s)	124, 434
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	5 cut(s)	130, 139, 266, 400, 620
AluI	AGCT	5 cut(s)	130, 139, 266, 400, 620
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	676
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	6 cut(s)	249, 484, 496, 608, 614, 695
ApeKI	GCWGC	3 cut(s)	12, 620, 647
ApoI	RAATTY	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	55, 695
AsuHPI	GGTGA	2 cut(s)	421, 518
AvaII	GGWCC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	24, 607, 659
BccI	CCATC	2 cut(s)	219, 683
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	2 cut(s)	140, 564
BfmI	CTRYAG	1 cut(s)	10
BisI	GCNGC	6 cut(s)	13, 156, 456, 621, 645, 648
BlsI	GCNGC	6 cut(s)	14, 157, 457, 622, 646, 649
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	55, 695
BmiI	GGNNCC	2 cut(s)	56, 393
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	697
BpmI	CTGGAG	2 cut(s)	329, 654
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	5 cut(s)	51, 94, 246, 611, 642
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 595
Bse1I	ACTGG	2 cut(s)	312, 572
Bse8I	GATNNNNATC	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	5 cut(s)	51, 94, 246, 611, 642
BseGI	GGATG	1 cut(s)	712
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	95, 595
BseMII	CTCAG	4 cut(s)	450, 525, 539, 716
BseNI	ACTGG	2 cut(s)	312, 572
BseXI	GCAGC	3 cut(s)	24, 607, 659
Bsh1236I	CGCG	1 cut(s)	644
BshFI	GGCC	6 cut(s)	251, 486, 498, 610, 616, 697
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	95, 595
BsmAI	GTCTC	1 cut(s)	455
BsmBI	CGTCTC	1 cut(s)	455
BsnI	GGCC	6 cut(s)	251, 486, 498, 610, 616, 697
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	386, 681
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	6 cut(s)	156, 179, 455, 642, 644, 693
BspANI	GGCC	6 cut(s)	251, 486, 498, 610, 616, 697
BspCNI	CTCAG	4 cut(s)	451, 526, 540, 715
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	644
BspLI	GGNNCC	2 cut(s)	56, 393
BspMAI	CTGCAG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	676
BspQI	GCTCTTC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	312, 572
BssECI	CCNNGG	5 cut(s)	51, 94, 246, 611, 642
BssMI	GATC	2 cut(s)	386, 681
BssT1I	CCWWGG	3 cut(s)	94, 246, 611
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	4 cut(s)	442, 478, 512, 655
Bst6I	CTCTTC	2 cut(s)	173, 330
BstC8I	GCNNGC	6 cut(s)	27, 277, 569, 618, 625, 695
BstDEI	CTNAG	4 cut(s)	459, 534, 548, 702
BstDSI	CCRYGG	2 cut(s)	94, 642
BstENI	CCTNNNNNAGG	1 cut(s)	593
BstF5I	GGATG	1 cut(s)	712
BstFNI	CGCG	1 cut(s)	644
BstKTI	GATC	2 cut(s)	389, 684
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	2 cut(s)	386, 681
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 272
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	644
BstV1I	GCAGC	3 cut(s)	24, 607, 659
BstX2I	RGATCY	1 cut(s)	681
BstYI	RGATCY	1 cut(s)	681
BsuRI	GGCC	6 cut(s)	251, 486, 498, 610, 616, 697
BtgI	CCRYGG	2 cut(s)	94, 642
BtsCI	GGATG	1 cut(s)	712
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	3 cut(s)	7, 171, 517
Cac8I	GCNNGC	6 cut(s)	27, 277, 569, 618, 625, 695
Cfr13I	GGNCC	2 cut(s)	55, 695
Cfr42I	CCGCGG	1 cut(s)	645
Csp6I	GTAC	3 cut(s)	4, 218, 543
CviAII	CATG	2 cut(s)	95, 500
CviQI	GTAC	3 cut(s)	4, 218, 543
DdeI	CTNAG	4 cut(s)	459, 534, 548, 702
DpnI	GATC	2 cut(s)	388, 683
DpnII	GATC	2 cut(s)	386, 681
EaeI	YGGCCR	2 cut(s)	249, 484
Eam1104I	CTCTTC	2 cut(s)	173, 330
EarI	CTCTTC	2 cut(s)	173, 330
Eco130I	CCWWGG	3 cut(s)	94, 246, 611
Eco47I	GGWCC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	50
EcoT14I	CCWWGG	3 cut(s)	94, 246, 611
ErhI	CCWWGG	3 cut(s)	94, 246, 611
Esp3I	CGTCTC	1 cut(s)	455
FaeI	CATG	2 cut(s)	98, 503
FaiI	YATR	8 cut(s)	96, 109, 239, 256, 273, 282, 287, 501
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	2 cut(s)	94, 499
FauI	CCCGC	2 cut(s)	186, 686
Fnu4HI	GCNGC	6 cut(s)	13, 156, 456, 621, 645, 648
Fsp4HI	GCNGC	6 cut(s)	13, 156, 456, 621, 645, 648
FspBI	CTAG	2 cut(s)	140, 564
GluI	GCNGC	6 cut(s)	13, 156, 456, 621, 645, 648
GsuI	CTGGAG	2 cut(s)	329, 654
HaeIII	GGCC	6 cut(s)	251, 486, 498, 610, 616, 697
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	2 cut(s)	98, 503
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	4 cut(s)	60, 116, 560, 599
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	2 cut(s)	421, 518
Hpy188I	TCNGA	4 cut(s)	59, 102, 406, 559
Hpy188III	TCNNGA	5 cut(s)	64, 148, 395, 671, 704
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	439, 497, 708
HpyCH4III	ACNGT	4 cut(s)	442, 478, 512, 655
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	5 cut(s)	12, 25, 107, 515, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 272
HpyF3I	CTNAG	4 cut(s)	459, 534, 548, 702
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	98, 503
Kpn2I	TCCGGA	1 cut(s)	394
KspI	CCGCGG	1 cut(s)	645
Kzo9I	GATC	2 cut(s)	386, 681
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	4 cut(s)	39, 86, 310, 397
Lsp1109I	GCAGC	3 cut(s)	24, 607, 659
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	2 cut(s)	140, 564
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	2 cut(s)	388, 683
MboI	GATC	2 cut(s)	386, 681
MboII	GAAGA	9 cut(s)	30, 136, 160, 334, 344, 347, 359, 446, 478
MflI	RGATCY	1 cut(s)	681
MhlI	GDGCHC	1 cut(s)	44
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	2 cut(s)	194, 450
MluNI	TGGCCA	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	5 cut(s)	253, 400, 529, 599, 667
Mox20I	TGGCCA	1 cut(s)	486
MroI	TCCGGA	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	1 cut(s)	638
MslI	CAYNNNNRTG	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	486
MspA1I	CMGCKG	2 cut(s)	620, 644
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	644
MwoI	GCNNNNNNNGC	2 cut(s)	136, 272
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	386, 681
NlaIII	CATG	2 cut(s)	98, 503
NlaIV	GGNNCC	2 cut(s)	56, 393
NmuCI	GTSAC	1 cut(s)	506
PciSI	GCTCTTC	1 cut(s)	173
PfeI	GAWTC	3 cut(s)	60, 560, 599
PkrI	GCNGC	6 cut(s)	14, 157, 457, 622, 646, 649
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp1406I	AACGTT	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	56, 393
PspPI	GGNCC	2 cut(s)	55, 695
PstI	CTGCAG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	681
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	3 cut(s)	5, 219, 544
RsaNI	GTAC	3 cut(s)	4, 218, 543
RseI	CAYNNNNRTG	1 cut(s)	504
SacII	CCGCGG	1 cut(s)	645
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	638
SatI	GCNGC	6 cut(s)	13, 156, 456, 621, 645, 648
Sau3AI	GATC	2 cut(s)	386, 681
Sau96I	GGNCC	2 cut(s)	55, 695
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	9 cut(s)	35, 53, 132, 141, 268, 402, 411, 508, 622
SfaNI	GCATC	1 cut(s)	697
SfcI	CTRYAG	1 cut(s)	10
Sfr303I	CCGCGG	1 cut(s)	645
SgrBI	CCGCGG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	504
Sse9I	AATT	2 cut(s)	194, 450
SsiI	CCGC	6 cut(s)	156, 179, 455, 642, 644, 693
SspMI	CTAG	2 cut(s)	140, 564
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	3 cut(s)	94, 246, 611
TaaI	ACNGT	4 cut(s)	442, 478, 512, 655
TaiI	ACGT	1 cut(s)	35
TasI	AATT	2 cut(s)	194, 450
TauI	GCSGC	3 cut(s)	158, 458, 647
TfiI	GAWTC	3 cut(s)	60, 560, 599
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TscAI	CASTG	3 cut(s)	14, 178, 517
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	3 cut(s)	12, 620, 647
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	1 cut(s)	516
TspRI	CASTG	3 cut(s)	14, 178, 517
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	593
XapI	RAATTY	1 cut(s)	194
XspI	CTAG	2 cut(s)	140, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.