Rorug07G0204100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007160
Physical Location & Seq
Reverse (-)
17888511 .. 17917212
28702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0204100.1

Sequence Viewer

Length: 846 bp
ATGGCTGCACCGTTTTTCTCAACGCCGTTTCAGCCCTACGTGTACCAGAGTCCACAAGATGCTATGATACCGTTTCAAATTCTGGGCGGTGAAGCTCAACTGGTGCAGATAATGTTGAAGCCGGAAGAAAAGGTTATAGCAAAGCCTGGTTCAATGTGCTTCATGTCTGGGTCGATCGAAATGGAAAATGTTTTTGTTCCTGAAAATGAAGTAGGGGTGTGGCAGTGGCTTTTTGGCAAGACGGTGAGTAGCATAGTTTTTCACAATAACGGTCAAGGCGATGGGTTTGTTGGAATTGCTGCACCTTCTCTGGCCAGAATTCTCCCGATTGATTTGGCAATGTTTGGTGGAGAGATTTTGTGCCAGCCAGATGCATTCCTTTGTTCCGTTAATGATGTTAAAGTCAGTAATACAGTTGACCAAAGGGCTCGTAATATCATTCCTGGTGCAGAGGGTTTTCTAAGACAGAAGCTATCTGGCCAAGGGCTTGCATTTATAATTGCAGGTGGATCTGTTGTACAAAAAAATCTTGAGGTGGGCGAGGTACTATCTGTTGATGTTTCTTGTATAGCAGCTGTGACTACAACAGTCAACGTTCAAATCAAATACAATGGGCCCATGAGAAGAGCAGTGTTTGGTGGTGACAATCTAGTAACAGCTGTTTTAACCGGACCAGGCATTGTCTTCATTCAGAGTTTACCTTTTCATCGATTTTCTCAGCGTATTGCTAGGGCAGTTACATCACCAAACATGAGGGAAAATCCAAAGTTCGTCATGCAGATAGCCATTTTCTTTTTCTTGGCATATGTTGTGATTATATCTTCATTAATCTTGACCGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Musclin

Protein Analysis

281

Amino Acids

30.5

Weight (kDa)

5.74

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIM24 PF01987 25 - 233 1.3e-52 Mitochondrial biogenesis AIM24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
AarI CACCTGC 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 494
AciI CCGC 1 cut(s) 87
AclI AACGTT 1 cut(s) 594
AclWI GGATC 1 cut(s) 517
AcoI YGGCCR 2 cut(s) 312, 478
AcsI RAATTY 2 cut(s) 78, 318
AfaI GTAC 3 cut(s) 44, 519, 546
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 4 cut(s) 77, 118, 153, 599
AjnI CCWGG 3 cut(s) 145, 442, 673
AluBI AGCT 4 cut(s) 95, 472, 575, 659
AluI AGCT 4 cut(s) 95, 472, 575, 659
AlwI GGATC 1 cut(s) 517
AoxI GGCC 3 cut(s) 312, 478, 614
ApaI GGGCCC 1 cut(s) 618
ApeKI GCWGC 3 cut(s) 5, 299, 572
ApoI RAATTY 2 cut(s) 78, 318
AseI ATTAAT 1 cut(s) 827
AspS9I GGNCC 3 cut(s) 614, 615, 671
AsuHPI GGTGA 4 cut(s) 101, 256, 653, 735
AvaII GGWCC 1 cut(s) 671
BaeGI GKGCMC 1 cut(s) 618
BalI TGGCCA 2 cut(s) 314, 480
BanII GRGCYC 2 cut(s) 430, 618
BbsI GAAGAC 1 cut(s) 676
BbvI GCAGC 2 cut(s) 286, 584
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 10
BciT130I CCWGG 3 cut(s) 147, 444, 675
BfaI CTAG 2 cut(s) 650, 729
BfuAI ACCTGC 1 cut(s) 494
BisI GCNGC 3 cut(s) 6, 300, 573
BlsI GCNGC 3 cut(s) 7, 301, 574
Bme1390I CCNGG 3 cut(s) 147, 444, 675
Bme18I GGWCC 1 cut(s) 671
BmgT120I GGNCC 3 cut(s) 614, 615, 671
BmiI GGNNCC 1 cut(s) 616
BmrFI CCNGG 3 cut(s) 147, 444, 675
BmsI GCATC 2 cut(s) 49, 361
BpiI GAAGAC 1 cut(s) 676
BpuEI CTTGAG 1 cut(s) 551
Bsa29I ATCGAT 1 cut(s) 709
BsaAI YACGTR 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 481
BsaWI WCCGGW 1 cut(s) 668
Bse1I ACTGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 3 cut(s) 147, 444, 675
BseCI ATCGAT 1 cut(s) 709
BseDI CCNNGG 1 cut(s) 481
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 731
BseNI ACTGG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 618
BseXI GCAGC 2 cut(s) 286, 584
BsgI GTGCAG 3 cut(s) 125, 285, 468
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 3 cut(s) 314, 480, 616
BshVI ATCGAT 1 cut(s) 709
BsiEI CGRYCG 1 cut(s) 177
BsiSI CCGG 2 cut(s) 122, 669
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 3 cut(s) 314, 480, 616
Bsp120I GGGCCC 1 cut(s) 614
Bsp1286I GDGCHC 2 cut(s) 430, 618
Bsp1407I TGTACA 1 cut(s) 517
Bsp143I GATC 2 cut(s) 174, 509
BspACI CCGC 1 cut(s) 87
BspANI GGCC 3 cut(s) 314, 480, 616
BspCNI CTCAG 1 cut(s) 730
BspDI ATCGAT 1 cut(s) 709
BspLI GGNNCC 1 cut(s) 616
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 1 cut(s) 517
BspQI GCTCTTC 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 345
BsrGI TGTACA 1 cut(s) 517
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 2 cut(s) 174, 509
BssT1I CCWWGG 1 cut(s) 481
Bst2UI CCWGG 3 cut(s) 147, 444, 675
Bst4CI ACNGT 6 cut(s) 12, 72, 244, 272, 415, 589
Bst6I CTCTTC 1 cut(s) 619
BstAUI TGTACA 1 cut(s) 517
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 365, 489
BstDEI CTNAG 2 cut(s) 461, 717
BstKTI GATC 2 cut(s) 177, 512
BstMBI GATC 2 cut(s) 174, 509
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 3 cut(s) 147, 444, 675
BstSCI CCNGG 3 cut(s) 145, 442, 673
BstSLI GKGCMC 1 cut(s) 618
BstV1I GCAGC 2 cut(s) 286, 584
BstV2I GAAGAC 1 cut(s) 676
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
Bsu15I ATCGAT 1 cut(s) 709
BsuRI GGCC 3 cut(s) 314, 480, 616
BsuTUI ATCGAT 1 cut(s) 709
BtgZI GCGATG 1 cut(s) 294
BtsI GCAGTG 2 cut(s) 230, 636
BtsIMutI CAGTG 2 cut(s) 230, 636
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 2 cut(s) 365, 489
Cfr13I GGNCC 3 cut(s) 614, 615, 671
ClaI ATCGAT 1 cut(s) 709
Csp6I GTAC 3 cut(s) 43, 518, 545
CviAII CATG 4 cut(s) 163, 619, 751, 775
CviQI GTAC 3 cut(s) 43, 518, 545
DdeI CTNAG 2 cut(s) 461, 717
DpnI GATC 2 cut(s) 176, 511
DpnII GATC 2 cut(s) 174, 509
EaeI YGGCCR 2 cut(s) 312, 478
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
Eco130I CCWWGG 1 cut(s) 481
Eco24I GRGCYC 2 cut(s) 430, 618
Eco47I GGWCC 1 cut(s) 671
EcoRI GAATTC 1 cut(s) 318
EcoRII CCWGG 3 cut(s) 145, 442, 673
EcoT14I CCWWGG 1 cut(s) 481
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 2 cut(s) 430, 618
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 4 cut(s) 166, 622, 754, 778
FatI CATG 4 cut(s) 162, 618, 750, 774
FauNDI CATATG 1 cut(s) 805
Fnu4HI GCNGC 3 cut(s) 6, 300, 573
FriOI GRGCYC 2 cut(s) 430, 618
Fsp4HI GCNGC 3 cut(s) 6, 300, 573
FspBI CTAG 2 cut(s) 650, 729
GluI GCNGC 3 cut(s) 6, 300, 573
HaeIII GGCC 3 cut(s) 314, 480, 616
HapII CCGG 2 cut(s) 122, 669
Hin1II CATG 4 cut(s) 166, 622, 754, 778
HincII GTYRAC 2 cut(s) 418, 592
HindII GTYRAC 2 cut(s) 418, 592
HinfI GANTC 1 cut(s) 49
HpaII CCGG 2 cut(s) 122, 669
HphI GGTGA 4 cut(s) 101, 256, 653, 735
Hpy166II GTNNAC 5 cut(s) 43, 53, 418, 592, 698
Hpy188I TCNGA 1 cut(s) 693
Hpy188III TCNNGA 4 cut(s) 200, 325, 530, 832
Hpy8I GTNNAC 5 cut(s) 43, 53, 418, 592, 698
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 6 cut(s) 12, 72, 244, 272, 415, 589
HpyCH4IV ACGT 2 cut(s) 39, 594
HpyCH4V TGCA 8 cut(s) 8, 106, 302, 374, 449, 491, 503, 778
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 461, 717
HpySE526I ACGT 2 cut(s) 39, 594
Hsp92II CATG 4 cut(s) 166, 622, 754, 778
Kzo9I GATC 2 cut(s) 174, 509
LguI GCTCTTC 1 cut(s) 619
Lsp1109I GCAGC 2 cut(s) 286, 584
LweI GCATC 2 cut(s) 49, 361
MaeI CTAG 2 cut(s) 650, 729
MaeII ACGT 2 cut(s) 39, 594
MaeIII GTNAC 4 cut(s) 577, 641, 652, 736
MalI GATC 2 cut(s) 176, 511
MboI GATC 2 cut(s) 174, 509
MboII GAAGA 4 cut(s) 137, 636, 676, 813
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 2 cut(s) 430, 618
MlsI TGGCCA 2 cut(s) 314, 480
MluCI AATT 4 cut(s) 78, 294, 318, 498
MluNI TGGCCA 2 cut(s) 314, 480
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 4 cut(s) 445, 526, 535, 747
Mox20I TGGCCA 2 cut(s) 314, 480
Mph1103I ATGCAT 1 cut(s) 376
MscI TGGCCA 2 cut(s) 314, 480
MseI TTAA 4 cut(s) 390, 399, 665, 827
Msp20I TGGCCA 2 cut(s) 314, 480
MspA1I CMGCKG 2 cut(s) 575, 659
MspI CCGG 2 cut(s) 122, 669
MspR9I CCNGG 3 cut(s) 147, 444, 675
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 3 cut(s) 147, 444, 675
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeI CATATG 1 cut(s) 805
NdeII GATC 2 cut(s) 174, 509
NlaIII CATG 4 cut(s) 166, 622, 754, 778
NlaIV GGNNCC 1 cut(s) 616
NmuCI GTSAC 2 cut(s) 577, 641
NsiI ATGCAT 1 cut(s) 376
PaqCI CACCTGC 1 cut(s) 494
PciSI GCTCTTC 1 cut(s) 619
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PctI GAATGC 1 cut(s) 374
PkrI GCNGC 3 cut(s) 7, 301, 574
Ple19I CGATCG 1 cut(s) 177
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Ppu21I YACGTR 1 cut(s) 40
PshBI ATTAAT 1 cut(s) 827
PsiI TTATAA 1 cut(s) 497
Psp1406I AACGTT 1 cut(s) 594
Psp6I CCWGG 3 cut(s) 145, 442, 673
PspGI CCWGG 3 cut(s) 145, 442, 673
PspN4I GGNNCC 1 cut(s) 616
PspOMI GGGCCC 1 cut(s) 614
PspPI GGNCC 3 cut(s) 614, 615, 671
PsuI RGATCY 1 cut(s) 509
PvuI CGATCG 1 cut(s) 177
PvuII CAGCTG 2 cut(s) 575, 659
RsaI GTAC 3 cut(s) 44, 519, 546
RsaNI GTAC 3 cut(s) 43, 518, 545
SapI GCTCTTC 1 cut(s) 619
SaqAI TTAA 4 cut(s) 390, 399, 665, 827
SatI GCNGC 3 cut(s) 6, 300, 573
Sau3AI GATC 2 cut(s) 174, 509
Sau96I GGNCC 3 cut(s) 614, 615, 671
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 3 cut(s) 147, 444, 675
SduI GDGCHC 2 cut(s) 430, 618
SfaNI GCATC 2 cut(s) 49, 361
SinI GGWCC 1 cut(s) 671
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 4 cut(s) 78, 294, 318, 498
SsiI CCGC 1 cut(s) 87
SspMI CTAG 2 cut(s) 650, 729
StyD4I CCNGG 3 cut(s) 145, 442, 673
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 6 cut(s) 12, 72, 244, 272, 415, 589
TaiI ACGT 2 cut(s) 42, 597
TaqI TCGA 3 cut(s) 173, 177, 709
TasI AATT 4 cut(s) 78, 294, 318, 498
TatI WGTACW 1 cut(s) 517
Tru1I TTAA 4 cut(s) 390, 399, 665, 827
Tru9I TTAA 4 cut(s) 390, 399, 665, 827
TscAI CASTG 2 cut(s) 230, 636
TseFI GTSAC 2 cut(s) 577, 641
TseI GCWGC 3 cut(s) 5, 299, 572
Tsp45I GTSAC 2 cut(s) 577, 641
TspDTI ATGAA 5 cut(s) 151, 222, 676, 695, 813
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 2 cut(s) 230, 636
VpaK11BI GGWCC 1 cut(s) 671
VspI ATTAAT 1 cut(s) 827
XapI RAATTY 2 cut(s) 78, 318
XspI CTAG 2 cut(s) 650, 729
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.