Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007160

Physical Location & Seq

Genomic Coordinates Forward (+)

45274239 .. 45276587

Gene Structure 2349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG342500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTACCACTGCAGCCGAAGATTGCAAGCAATGTTTTGGAGCAGACAAACCTGGGTCCGATTCCAGAAGCAACCATTTTGCTCCAAACCCCATGGTCTGACTACATACGACGAGTCGTTGAAGAAGCTTGACAAGCTAGACTTCCTGACTGCCGCTAAAATGCTCTTCACTGACCCGCCCAAGAAAAAGAAATTTGGGCTTGATTTCCACCTGGTACAACTATTCTTTGCTTGTATGCCTTCCTTGGCTGTATATCTGGTAGCTCAATATGCTCGCTATGATATGAGAAAAATGGAAGCAGAACTGGAGCAGAAAAAGAAGAAACAAGAAGAGAGAGTGGAAGAAATAGAACTAAATGCTACTAAAGAAAAAGAAACAAGATCGGTTCCGGAGCTTTCGGAGGTGAGAGAGAGATTAGAAAAACTTGAAGAAACTGTGAAGGGAATTGCGGCTGAGACGAAGAAACAAACCGTCAATGGCCAAGCAAAAGGCCATGAAGGTGACAGTGCAAAGAAAAGTTTTGGAACTGAGGCAAGTACCCCGAGTAGTTCAGAATCTAGCAAGTCAGTTGAGAAAGACCCCCTCAAACAGGATTCTGTAGGGCCAAGGCCAGCTGCAAGCAAGGATAGATTAACCGCGGCAGCAACAGTTCCTAATGCTTCTCCAGAGGGCAAGATCCAAGATGGTGGGCCTTCTCAAGATGCTAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Musclin

Protein Analysis

237

Amino Acids

26.78

Weight (kDa)

9.23

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80700 AT1G80980 AT1G80980
fragaria_vesca	FvH4_5g29190 FvH4_5g29190 FvH4_5g29190 FvH4_5g29190
malus_domestica	MD03G1160000.v1.1 MD17G1221100.v1.1
prunus_persica	Prupe.1G199000_v2.0.a1 Prupe.7G069400_v2.0.a1
pyrus_communis	pycom17g22550
rosa_chinensis	RchiOBHm_Chr7g0221831
rosa_laevigata	RLG00000002111
rosa_multiflora	Rmu_sc0005834.1_g000012 Rmu_sc0034732.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237590 Rroxscaffold_3G00237660
rosa_rugosa	Rorug07G0204100 Rorug07G0204100
rosa_samantha	Rh7AG344900 Rh7BG335400 Rh7CG362300 Rh7DG342500
rosa_wichuraiana	Rw7G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	638
AccIII	TCCGGA	1 cut(s)	388
AciI	CCGC	5 cut(s)	153, 176, 449, 636, 638
AclWI	GGATC	1 cut(s)	670
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	3 cut(s)	5, 216, 538
AfiI	CCNNNNNNNGG	1 cut(s)	589
AgsI	TTSAA	2 cut(s)	121, 428
AjnI	CCWGG	2 cut(s)	50, 210
AluBI	AGCT	5 cut(s)	127, 136, 263, 394, 614
AluI	AGCT	5 cut(s)	127, 136, 263, 394, 614
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	1 cut(s)	670
Ama87I	CYCGRG	1 cut(s)	541
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	5 cut(s)	478, 490, 602, 608, 689
ApeKI	GCWGC	3 cut(s)	12, 614, 641
ApoI	RAATTY	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	55, 602, 689
AsuHPI	GGTGA	2 cut(s)	415, 512
AvaI	CYCGRG	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	480
BbvI	GCAGC	3 cut(s)	24, 601, 653
BccI	CCATC	1 cut(s)	677
BciT130I	CCWGG	2 cut(s)	52, 212
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	2 cut(s)	137, 558
BfmI	CTRYAG	2 cut(s)	10, 597
BisI	GCNGC	6 cut(s)	13, 153, 450, 615, 639, 642
BlsI	GCNGC	6 cut(s)	14, 154, 451, 616, 640, 643
Bme1390I	CCNGG	2 cut(s)	52, 212
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	3 cut(s)	55, 602, 689
BmiI	GGNNCC	2 cut(s)	56, 387
BmrFI	CCNGG	2 cut(s)	52, 212
BmsI	GCATC	1 cut(s)	691
BpmI	CTGGAG	2 cut(s)	326, 648
BpuEI	CTTGAG	1 cut(s)	681
BsaJI	CCNNGG	5 cut(s)	51, 91, 243, 605, 636
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse1I	ACTGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	36
BseAI	TCCGGA	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	52, 212
BseDI	CCNNGG	5 cut(s)	51, 91, 243, 605, 636
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	444, 519
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	3 cut(s)	24, 601, 653
Bsh1236I	CGCG	1 cut(s)	638
BshFI	GGCC	5 cut(s)	480, 492, 604, 610, 691
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	1 cut(s)	449
BsmBI	CGTCTC	1 cut(s)	449
BsnI	GGCC	5 cut(s)	480, 492, 604, 610, 691
BsoBI	CYCGRG	1 cut(s)	541
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	380, 675
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	5 cut(s)	153, 176, 449, 636, 638
BspANI	GGCC	5 cut(s)	480, 492, 604, 610, 691
BspCNI	CTCAG	2 cut(s)	445, 520
BspEI	TCCGGA	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	638
BspLI	GGNNCC	2 cut(s)	56, 387
BspMAI	CTGCAG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	670
BspQI	GCTCTTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	5 cut(s)	51, 91, 243, 605, 636
BssMI	GATC	2 cut(s)	380, 675
BssT1I	CCWWGG	3 cut(s)	91, 243, 605
Bst2UI	CCWGG	2 cut(s)	52, 212
Bst4CI	ACNGT	4 cut(s)	436, 472, 506, 649
Bst6I	CTCTTC	2 cut(s)	170, 324
BstC8I	GCNNGC	4 cut(s)	27, 274, 612, 619
BstDEI	CTNAG	2 cut(s)	453, 528
BstDSI	CCRYGG	2 cut(s)	91, 636
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstFNI	CGCG	1 cut(s)	638
BstKTI	GATC	2 cut(s)	383, 678
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	2 cut(s)	380, 675
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 269
BstNI	CCWGG	2 cut(s)	52, 212
BstSCI	CCNGG	2 cut(s)	50, 210
BstSFI	CTRYAG	2 cut(s)	10, 597
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	3 cut(s)	24, 601, 653
BstX2I	RGATCY	1 cut(s)	675
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	675
BsuRI	GGCC	5 cut(s)	480, 492, 604, 610, 691
BtgI	CCRYGG	2 cut(s)	91, 636
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	3 cut(s)	7, 168, 511
Cac8I	GCNNGC	4 cut(s)	27, 274, 612, 619
Cfr13I	GGNCC	3 cut(s)	55, 602, 689
Cfr42I	CCGCGG	1 cut(s)	639
CsiI	ACCWGGT	1 cut(s)	210
Csp6I	GTAC	3 cut(s)	4, 215, 537
CviAII	CATG	2 cut(s)	92, 494
CviQI	GTAC	3 cut(s)	4, 215, 537
DdeI	CTNAG	2 cut(s)	453, 528
DpnI	GATC	2 cut(s)	382, 677
DpnII	GATC	2 cut(s)	380, 675
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	2 cut(s)	170, 324
EarI	CTCTTC	2 cut(s)	170, 324
Eco130I	CCWWGG	3 cut(s)	91, 243, 605
Eco47I	GGWCC	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	541
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	50, 210
EcoT14I	CCWWGG	3 cut(s)	91, 243, 605
ErhI	CCWWGG	3 cut(s)	91, 243, 605
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	2 cut(s)	95, 497
FaiI	YATR	8 cut(s)	93, 106, 236, 253, 270, 279, 284, 495
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	2 cut(s)	91, 493
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	6 cut(s)	13, 153, 450, 615, 639, 642
Fsp4HI	GCNGC	6 cut(s)	13, 153, 450, 615, 639, 642
FspBI	CTAG	2 cut(s)	137, 558
GluI	GCNGC	6 cut(s)	13, 153, 450, 615, 639, 642
GsuI	CTGGAG	2 cut(s)	326, 648
HaeIII	GGCC	5 cut(s)	480, 492, 604, 610, 691
HapII	CCGG	1 cut(s)	389
Hin1II	CATG	2 cut(s)	95, 497
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	4 cut(s)	60, 113, 554, 593
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	2 cut(s)	415, 512
Hpy188I	TCNGA	4 cut(s)	59, 99, 400, 553
Hpy188III	TCNNGA	5 cut(s)	64, 145, 389, 665, 698
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	4 cut(s)	249, 433, 491, 702
HpyCH4III	ACNGT	4 cut(s)	436, 472, 506, 649
HpyCH4V	TGCA	4 cut(s)	12, 25, 509, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 269
HpyF3I	CTNAG	2 cut(s)	453, 528
Hsp92II	CATG	2 cut(s)	95, 497
Kpn2I	TCCGGA	1 cut(s)	388
KspI	CCGCGG	1 cut(s)	639
Kzo9I	GATC	2 cut(s)	380, 675
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	4 cut(s)	39, 86, 307, 391
Lsp1109I	GCAGC	3 cut(s)	24, 601, 653
LweI	GCATC	1 cut(s)	691
MabI	ACCWGGT	1 cut(s)	210
MaeI	CTAG	2 cut(s)	137, 558
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	2 cut(s)	382, 677
MboI	GATC	2 cut(s)	380, 675
MboII	GAAGA	8 cut(s)	30, 133, 157, 331, 341, 353, 440, 472
MflI	RGATCY	1 cut(s)	675
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	2 cut(s)	191, 444
MluNI	TGGCCA	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	4 cut(s)	394, 523, 593, 661
Mox20I	TGGCCA	1 cut(s)	480
MroI	TCCGGA	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	1 cut(s)	632
MslI	CAYNNNNRTG	1 cut(s)	498
Msp20I	TGGCCA	1 cut(s)	480
MspA1I	CMGCKG	2 cut(s)	614, 638
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	2 cut(s)	52, 212
MvaI	CCWGG	2 cut(s)	52, 212
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	2 cut(s)	133, 269
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	2 cut(s)	380, 675
NlaIII	CATG	2 cut(s)	95, 497
NlaIV	GGNNCC	2 cut(s)	56, 387
NmuCI	GTSAC	1 cut(s)	500
PciSI	GCTCTTC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	60, 554, 593
PkrI	GCNGC	6 cut(s)	14, 154, 451, 616, 640, 643
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	50, 210
PspGI	CCWGG	2 cut(s)	50, 210
PspN4I	GGNNCC	2 cut(s)	56, 387
PspPI	GGNCC	3 cut(s)	55, 602, 689
PstI	CTGCAG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	675
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	3 cut(s)	5, 216, 538
RsaNI	GTAC	3 cut(s)	4, 215, 537
RseI	CAYNNNNRTG	1 cut(s)	498
SacII	CCGCGG	1 cut(s)	639
SapI	GCTCTTC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	632
SatI	GCNGC	6 cut(s)	13, 153, 450, 615, 639, 642
Sau3AI	GATC	2 cut(s)	380, 675
Sau96I	GGNCC	3 cut(s)	55, 602, 689
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	52, 212
SetI	ASST	9 cut(s)	53, 129, 138, 213, 265, 396, 405, 502, 616
SexAI	ACCWGGT	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	2 cut(s)	10, 597
Sfr303I	CCGCGG	1 cut(s)	639
SgrBI	CCGCGG	1 cut(s)	639
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	696
SmoI	CTYRAG	1 cut(s)	696
Sse9I	AATT	2 cut(s)	191, 444
SsiI	CCGC	5 cut(s)	153, 176, 449, 636, 638
SspMI	CTAG	2 cut(s)	137, 558
StyD4I	CCNGG	2 cut(s)	50, 210
StyI	CCWWGG	3 cut(s)	91, 243, 605
TaaI	ACNGT	4 cut(s)	436, 472, 506, 649
TasI	AATT	2 cut(s)	191, 444
TauI	GCSGC	3 cut(s)	155, 452, 641
TfiI	GAWTC	3 cut(s)	60, 554, 593
Tru1I	TTAA	1 cut(s)	632
Tru9I	TTAA	1 cut(s)	632
TscAI	CASTG	3 cut(s)	14, 175, 511
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	3 cut(s)	12, 614, 641
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	1 cut(s)	510
TspRI	CASTG	3 cut(s)	14, 175, 511
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	587
XapI	RAATTY	1 cut(s)	191
XspI	CTAG	2 cut(s)	137, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.