MD03G1160000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0007160
Physical Location & Seq
Reverse (-)
19100443 .. 19101800
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1160000.v1.1.491

Sequence Viewer

Length: 252 bp
ATGATTAATCATGAATTCCTTCTCCTTTTCAGGCGGTTACAAAATTTAACTCCTTTCAAACCCACAACAATCTTACAGCCAAGGAGAACATTTTGCGCCAAATCCCCCGCAAATGCCAACAACGGCAACGTCCCGGAGACGAGTGTGAGTTCGTACCATGAACAGTATAAGCAGCTGGAGAAGCTCGACTTCATGACCGCCACTAAAATGCTCTTCACTGCTCTCCCTTCGAAAATTAAATTTGGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Musclin

Protein Analysis

84

Amino Acids

9.57

Weight (kDa)

9.76

Isoelectric Point (pI)

57.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 34, 108, 198
AcsI RAATTY 3 cut(s) 14, 43, 239
AfaI GTAC 1 cut(s) 155
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 2 cut(s) 175, 184
AluI AGCT 2 cut(s) 175, 184
Alw26I GTCTC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 3 cut(s) 14, 43, 239
AseI ATTAAT 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 230
BbvI GCAGC 1 cut(s) 184
BceAI ACGGC 1 cut(s) 139
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 131
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 197
Bpu14I TTCGAA 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 131
BsmBI CGTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 116
Bsp119I TTCGAA 1 cut(s) 230
BspACI CCGC 3 cut(s) 34, 108, 198
BspHI TCATGA 2 cut(s) 10, 192
BspQI GCTCTTC 1 cut(s) 218
BspT104I TTCGAA 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 230
BstHHI GCGC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
CciI TCATGA 2 cut(s) 10, 192
CfoI GCGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 154
CviAII CATG 3 cut(s) 11, 158, 193
CviJI RGCY 4 cut(s) 79, 175, 184, 246
CviKI_1 RGCY 4 cut(s) 79, 175, 184, 246
CviQI GTAC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 3 cut(s) 14, 161, 196
FaiI YATR 4 cut(s) 12, 159, 168, 194
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 1 cut(s) 116
FatI CATG 3 cut(s) 10, 157, 192
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 173
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 197
HapII CCGG 1 cut(s) 134
HhaI GCGC 1 cut(s) 98
Hin1II CATG 3 cut(s) 14, 161, 196
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HpaII CCGG 1 cut(s) 134
Hpy188III TCNNGA 2 cut(s) 11, 193
HpyAV CCTTC 2 cut(s) 29, 237
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 3 cut(s) 14, 161, 196
HspAI GCGC 1 cut(s) 96
LguI GCTCTTC 1 cut(s) 218
LpnPI CCDG 3 cut(s) 16, 147, 161
Lsp1109I GCAGC 1 cut(s) 184
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 36
MboII GAAGA 1 cut(s) 205
MluCI AATT 4 cut(s) 14, 43, 234, 239
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 3 cut(s) 6, 47, 237
MslI CAYNNNNRTG 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 181
NciI CCSGG 1 cut(s) 134
NlaIII CATG 3 cut(s) 14, 161, 196
NspV TTCGAA 1 cut(s) 230
PagI TCATGA 2 cut(s) 10, 192
PciSI GCTCTTC 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 18
PfoI TCCNGGA 1 cut(s) 132
PkrI GCNGC 1 cut(s) 174
PshBI ATTAAT 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 3 cut(s) 6, 47, 237
SatI GCNGC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 134
SetI ASST 3 cut(s) 132, 177, 186
SfuI TTCGAA 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 4 cut(s) 14, 43, 234, 239
SsiI CCGC 3 cut(s) 34, 108, 198
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 165
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 186, 230
TasI AATT 4 cut(s) 14, 43, 234, 239
Tru1I TTAA 3 cut(s) 6, 47, 237
Tru9I TTAA 3 cut(s) 6, 47, 237
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 27, 174, 181
TspRI CASTG 1 cut(s) 223
VspI ATTAAT 1 cut(s) 6
XapI RAATTY 3 cut(s) 14, 43, 239
XmnI GAANNNNTTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.