Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007160

Physical Location & Seq

Genomic Coordinates Forward (+)

20233092 .. 20235593

Gene Structure 2502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29190.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTACCACTGCAGCCGAAGATTGCGAGCGACGTTTACCTGGGTCCGACTCCAGAAACAACAACCCTTTTGCTCCAAACCTCCCCAACCCCATGATGGTCTGAGCTCATACAACGAGTCGTTGAAGAAGCTTGACAAGATGGACTTGGTCACTGCCGCTAAGATGCTCTTCACTGACCCTCCCTCTAAGACAAAGAAATTTGGGCTTGATTTCCATCTGGTACAACTATTCTTTGCCTGTATGCCTTCGTTGGCTGTATATCTGGTGGCTCAGTATGCTCGCTATGAAATGAGAAAAATGGAAGCAGAACATGAACAAAAAAGAAAGAAACAAGAAGAGGAGAAAGCAGAAGAAATAGAAGTAAATGCTACTAAAGAAAAAGAAGCAAGCTCAGTTCCAGAACTTTTGGAGGTGAGAGAAAGATTAGAAAAACTTGAAGAAACTGTGAAAGAAATTGCAGTTGAGACGAAGAAGAAACAAACGGTCCATGGCCAAGCAAAAGGTCATGAAGGTGACATTGCAAAGAAAAGTTTTGGAACAGAGGCAAGTACCCTGAGCAGCTCAGATTCTAGCAAACCAGTTGAGAAAGACCCCATCAAACAGGATTCTATAGAGTCAAGGGCAGCTGCGGCGGGCACAGATAGGTTAAATGGGCCAGCAAAAGTTCCTAATGCTTCTGCAGAGGGCAAGATCCAAGATGGCGGGACTTCTCCAGATGCTAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Musclin

Protein Analysis

243

Amino Acids

27.15

Weight (kDa)

8.76

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80700 AT1G80980 AT1G80980
fragaria_vesca	FvH4_5g29190 FvH4_5g29190 FvH4_5g29190 FvH4_5g29190
malus_domestica	MD03G1160000.v1.1 MD17G1221100.v1.1
prunus_persica	Prupe.1G199000_v2.0.a1 Prupe.7G069400_v2.0.a1
pyrus_communis	pycom17g22550
rosa_chinensis	RchiOBHm_Chr7g0221831
rosa_laevigata	RLG00000002111
rosa_multiflora	Rmu_sc0005834.1_g000012 Rmu_sc0034732.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237590 Rroxscaffold_3G00237660
rosa_rugosa	Rorug07G0204100 Rorug07G0204100
rosa_samantha	Rh7AG344900 Rh7BG335400 Rh7CG362300 Rh7DG342500
rosa_wichuraiana	Rw7G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	156, 629, 632, 702
AclWI	GGATC	1 cut(s)	685
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	3 cut(s)	5, 222, 550
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	124, 437
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	5 cut(s)	105, 130, 390, 561, 626
AluI	AGCT	5 cut(s)	105, 130, 390, 561, 626
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	1 cut(s)	685
AoxI	GGCC	2 cut(s)	490, 653
ApeKI	GCWGC	4 cut(s)	12, 558, 623, 626
ApoI	RAATTY	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	43, 484, 653
AsuHPI	GGTGA	2 cut(s)	424, 524
AvaII	GGWCC	2 cut(s)	43, 484
BaeGI	GKGCMC	1 cut(s)	638
BalI	TGGCCA	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	4 cut(s)	24, 570, 613, 635
BccI	CCATC	5 cut(s)	89, 133, 222, 602, 692
BciT130I	CCWGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	3 cut(s)	10, 609, 678
BisI	GCNGC	6 cut(s)	13, 156, 559, 624, 627, 630
BlsI	GCNGC	6 cut(s)	14, 157, 560, 625, 628, 631
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	2 cut(s)	43, 484
BmgT120I	GGNCC	3 cut(s)	43, 484, 653
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	2 cut(s)	153, 706
BpmI	CTGGAG	2 cut(s)	35, 696
Bpu10I	CCTNAGC	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	39, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	578
Bse3DI	GCAATG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	2 cut(s)	39, 487
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	5 cut(s)	92, 284, 405, 545, 576
BseNI	ACTGG	1 cut(s)	578
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	638
BseXI	GCAGC	4 cut(s)	24, 570, 613, 635
BshFI	GGCC	2 cut(s)	492, 655
BsiHKAI	GWGCWC	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	458
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	718
BsnI	GGCC	2 cut(s)	492, 655
Bsp1286I	GDGCHC	2 cut(s)	107, 638
Bsp143I	GATC	1 cut(s)	690
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	4 cut(s)	156, 629, 632, 702
BspANI	GGCC	2 cut(s)	492, 655
BspCNI	CTCAG	5 cut(s)	93, 283, 404, 546, 575
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	44
BspMAI	CTGCAG	2 cut(s)	14, 682
BspPI	GGATC	1 cut(s)	685
BspQI	GCTCTTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	578
BssECI	CCNNGG	2 cut(s)	39, 487
BssMI	GATC	1 cut(s)	690
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	445, 484
Bst6I	CTCTTC	2 cut(s)	173, 330
BstC8I	GCNNGC	5 cut(s)	27, 280, 388, 634, 657
BstDEI	CTNAG	7 cut(s)	101, 159, 186, 270, 391, 554, 562
BstDSI	CCRYGG	1 cut(s)	487
BstKTI	GATC	1 cut(s)	693
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	1 cut(s)	690
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 629
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	3 cut(s)	10, 609, 678
BstSLI	GKGCMC	1 cut(s)	638
BstV1I	GCAGC	4 cut(s)	24, 570, 613, 635
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
BsuRI	GGCC	2 cut(s)	492, 655
BtgI	CCRYGG	1 cut(s)	487
BtsI	GCAGTG	2 cut(s)	7, 150
BtsIMutI	CAGTG	3 cut(s)	7, 150, 171
Cac8I	GCNNGC	5 cut(s)	27, 280, 388, 634, 657
CciI	TCATGA	1 cut(s)	505
Cfr13I	GGNCC	3 cut(s)	43, 484, 653
Csp6I	GTAC	3 cut(s)	4, 221, 549
CviAII	CATG	4 cut(s)	92, 311, 488, 506
CviQI	GTAC	3 cut(s)	4, 221, 549
DdeI	CTNAG	7 cut(s)	101, 159, 186, 270, 391, 554, 562
DpnI	GATC	1 cut(s)	692
DpnII	GATC	1 cut(s)	690
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	173, 330
EarI	CTCTTC	2 cut(s)	173, 330
Ecl136II	GAGCTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	43, 484
Eco53kI	GAGCTC	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	4 cut(s)	95, 314, 491, 509
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 152, 184
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	4 cut(s)	91, 310, 487, 505
FauI	CCCGC	2 cut(s)	625, 695
Fnu4HI	GCNGC	6 cut(s)	13, 156, 559, 624, 627, 630
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	6 cut(s)	13, 156, 559, 624, 627, 630
FspBI	CTAG	1 cut(s)	570
GluI	GCNGC	6 cut(s)	13, 156, 559, 624, 627, 630
GsuI	CTGGAG	2 cut(s)	35, 696
HaeIII	GGCC	2 cut(s)	492, 655
Hin1II	CATG	4 cut(s)	95, 314, 491, 509
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	5 cut(s)	48, 116, 566, 605, 614
HphI	GGTGA	2 cut(s)	424, 524
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	3 cut(s)	47, 102, 565
Hpy188III	TCNNGA	4 cut(s)	52, 398, 506, 713
Hpy8I	GTNNAC	1 cut(s)	36
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	255, 503
HpyCH4III	ACNGT	2 cut(s)	445, 484
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	4 cut(s)	12, 458, 521, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 629
HpyF3I	CTNAG	7 cut(s)	101, 159, 186, 270, 391, 554, 562
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	4 cut(s)	95, 314, 491, 509
Kzo9I	GATC	1 cut(s)	690
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	77
Lsp1109I	GCAGC	4 cut(s)	24, 570, 613, 635
LweI	GCATC	2 cut(s)	153, 706
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	148, 512
MalI	GATC	1 cut(s)	692
MboI	GATC	1 cut(s)	690
MboII	GAAGA	8 cut(s)	30, 136, 160, 347, 362, 449, 481, 484
MflI	RGATCY	1 cut(s)	690
MhlI	GDGCHC	2 cut(s)	107, 638
MlsI	TGGCCA	1 cut(s)	492
MluCI	AATT	2 cut(s)	197, 453
MluNI	TGGCCA	1 cut(s)	492
MlyI	GAGTC	3 cut(s)	42, 125, 623
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	7 cut(s)	90, 189, 193, 331, 403, 535, 676
Mox20I	TGGCCA	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	492
MseI	TTAA	1 cut(s)	647
MslI	CAYNNNNRTG	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	2 cut(s)	275, 629
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	1 cut(s)	690
NlaIII	CATG	4 cut(s)	95, 314, 491, 509
NlaIV	GGNNCC	1 cut(s)	44
NmuCI	GTSAC	2 cut(s)	148, 512
PagI	TCATGA	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	566, 605
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	6 cut(s)	14, 157, 560, 625, 628, 631
PleI	GAGTC	3 cut(s)	42, 124, 622
PpsI	GAGTC	3 cut(s)	42, 124, 622
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	3 cut(s)	43, 484, 653
PstI	CTGCAG	2 cut(s)	14, 682
PsuI	RGATCY	1 cut(s)	690
PsyI	GACNNNGTC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	3 cut(s)	5, 222, 550
RsaNI	GTAC	3 cut(s)	4, 221, 549
RseI	CAYNNNNRTG	1 cut(s)	510
SacI	GAGCTC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	647
SatI	GCNGC	6 cut(s)	13, 156, 559, 624, 627, 630
Sau3AI	GATC	1 cut(s)	690
Sau96I	GGNCC	3 cut(s)	43, 484, 653
SchI	GAGTC	3 cut(s)	42, 125, 623
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	2 cut(s)	107, 638
SfaNI	GCATC	2 cut(s)	153, 706
SfcI	CTRYAG	3 cut(s)	10, 609, 678
SinI	GGWCC	2 cut(s)	43, 484
SmiMI	CAYNNNNRTG	1 cut(s)	510
Sse9I	AATT	2 cut(s)	197, 453
SsiI	CCGC	4 cut(s)	156, 629, 632, 702
SspMI	CTAG	1 cut(s)	570
SstI	GAGCTC	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	2 cut(s)	445, 484
TaiI	ACGT	1 cut(s)	35
TasI	AATT	2 cut(s)	197, 453
TauI	GCSGC	2 cut(s)	158, 632
TfiI	GAWTC	2 cut(s)	566, 605
Tru1I	TTAA	1 cut(s)	647
Tru9I	TTAA	1 cut(s)	647
TscAI	CASTG	3 cut(s)	14, 157, 178
TseFI	GTSAC	2 cut(s)	148, 512
TseI	GCWGC	4 cut(s)	12, 558, 623, 626
Tsp45I	GTSAC	2 cut(s)	148, 512
TspDTI	ATGAA	3 cut(s)	300, 327, 522
TspRI	CASTG	3 cut(s)	14, 157, 178
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	43, 484
XapI	RAATTY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.