Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034732.1

Orthogroup ID

OG0007160

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2294

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034732.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 659 bp

gattccagaagcaaccattttgctccaaacccccccatggtctgactacatacgacgagtcgttgaagaagcttgacaagctagacttcctgactgccgctaaaatgctcttcactgacccgcccaagaaaaagaaatttgggcttgatttccacctggtacaactattctttgcttgtatgccttccttggctgtatatctggtagctcaatatgctcgctatgatatgagaaaaatggaagcagaactggagcagaaaaagaagaaacaagaagagagagtggaagaaatagaactaaatgctactaaagaaaaagaaacaagatcggttccggagctttcggaggtgagagagagattagaaaaacttgaagaaactgtgaagggaattgcggctgagacgaagaaacaaaccgtcaatggccaagcaaaaggccatgaaggtgacagtgcaaagaaaagttttggaactgaggcaagtaccccgagtagttcagaatctagcaagccagttgagaaagaccccctcaaacaggattctgtagggccaaggccagctgcaagcaaggatagattaaccgcggcagcaacagttcctaatgcttctccagagggcaagatccaagatggtgggccttctcaagatgctaaaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Musclin

Protein Analysis

218

Amino Acids

24.26

Weight (kDa)

8.84

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80700 AT1G80980 AT1G80980
fragaria_vesca	FvH4_5g29190 FvH4_5g29190 FvH4_5g29190 FvH4_5g29190
malus_domestica	MD03G1160000.v1.1 MD17G1221100.v1.1
prunus_persica	Prupe.1G199000_v2.0.a1 Prupe.7G069400_v2.0.a1
pyrus_communis	pycom17g22550
rosa_chinensis	RchiOBHm_Chr7g0221831
rosa_laevigata	RLG00000002111
rosa_multiflora	Rmu_sc0005834.1_g000012 Rmu_sc0034732.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237590 Rroxscaffold_3G00237660
rosa_rugosa	Rorug07G0204100 Rorug07G0204100
rosa_samantha	Rh7AG344900 Rh7BG335400 Rh7CG362300 Rh7DG342500
rosa_wichuraiana	Rw7G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	583
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	5 cut(s)	98, 121, 394, 581, 583
AclWI	GGATC	1 cut(s)	615
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	2 cut(s)	161, 483
AfiI	CCNNNNNNNGG	2 cut(s)	37, 534
AgsI	TTSAA	2 cut(s)	66, 373
AjnI	CCWGG	1 cut(s)	155
AluBI	AGCT	5 cut(s)	72, 81, 208, 339, 559
AluI	AGCT	5 cut(s)	72, 81, 208, 339, 559
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	1 cut(s)	615
Ama87I	CYCGRG	1 cut(s)	486
Aor13HI	TCCGGA	1 cut(s)	333
AoxI	GGCC	5 cut(s)	423, 435, 547, 553, 634
ApeKI	GCWGC	2 cut(s)	559, 586
ApoI	RAATTY	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	547, 634
AsuHPI	GGTGA	2 cut(s)	360, 457
AvaI	CYCGRG	1 cut(s)	486
BalI	TGGCCA	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	546, 598
BccI	CCATC	1 cut(s)	622
BciT130I	CCWGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	2 cut(s)	82, 503
BfmI	CTRYAG	1 cut(s)	542
BisI	GCNGC	5 cut(s)	98, 395, 560, 584, 587
BlsI	GCNGC	5 cut(s)	99, 396, 561, 585, 588
Bme1390I	CCNGG	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	2 cut(s)	547, 634
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	636
BpmI	CTGGAG	2 cut(s)	271, 593
BpuEI	CTTGAG	1 cut(s)	626
BsaJI	CCNNGG	4 cut(s)	36, 188, 550, 581
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 534
Bse1I	ACTGG	2 cut(s)	254, 511
BseAI	TCCGGA	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	4 cut(s)	36, 188, 550, 581
BseLI	CCNNNNNNNGG	2 cut(s)	37, 534
BseMII	CTCAG	2 cut(s)	389, 464
BseNI	ACTGG	2 cut(s)	254, 511
BseXI	GCAGC	2 cut(s)	546, 598
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	5 cut(s)	425, 437, 549, 555, 636
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	37, 534
BsmAI	GTCTC	1 cut(s)	394
BsmBI	CGTCTC	1 cut(s)	394
BsnI	GGCC	5 cut(s)	425, 437, 549, 555, 636
BsoBI	CYCGRG	1 cut(s)	486
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	325, 620
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	5 cut(s)	98, 121, 394, 581, 583
BspANI	GGCC	5 cut(s)	425, 437, 549, 555, 636
BspCNI	CTCAG	2 cut(s)	390, 465
BspEI	TCCGGA	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	615
BspQI	GCTCTTC	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	254, 511
BssECI	CCNNGG	4 cut(s)	36, 188, 550, 581
BssMI	GATC	2 cut(s)	325, 620
BssT1I	CCWWGG	3 cut(s)	36, 188, 550
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	4 cut(s)	381, 417, 451, 594
Bst6I	CTCTTC	2 cut(s)	115, 269
BstC8I	GCNNGC	4 cut(s)	219, 508, 557, 564
BstDEI	CTNAG	2 cut(s)	398, 473
BstDSI	CCRYGG	2 cut(s)	36, 581
BstENI	CCTNNNNNAGG	1 cut(s)	532
BstFNI	CGCG	1 cut(s)	583
BstKTI	GATC	2 cut(s)	328, 623
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	2 cut(s)	325, 620
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 214
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	542
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	546, 598
BstX2I	RGATCY	1 cut(s)	620
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	620
BsuRI	GGCC	5 cut(s)	425, 437, 549, 555, 636
BtgI	CCRYGG	2 cut(s)	36, 581
BtsIMutI	CAGTG	2 cut(s)	113, 456
Cac8I	GCNNGC	4 cut(s)	219, 508, 557, 564
Cfr13I	GGNCC	2 cut(s)	547, 634
Cfr42I	CCGCGG	1 cut(s)	584
CsiI	ACCWGGT	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	160, 482
CviAII	CATG	2 cut(s)	37, 439
CviQI	GTAC	2 cut(s)	160, 482
DdeI	CTNAG	2 cut(s)	398, 473
DpnI	GATC	2 cut(s)	327, 622
DpnII	GATC	2 cut(s)	325, 620
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	2 cut(s)	115, 269
EarI	CTCTTC	2 cut(s)	115, 269
Eco130I	CCWWGG	3 cut(s)	36, 188, 550
Eco88I	CYCGRG	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	3 cut(s)	36, 188, 550
ErhI	CCWWGG	3 cut(s)	36, 188, 550
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	2 cut(s)	40, 442
FaiI	YATR	8 cut(s)	38, 51, 181, 198, 215, 224, 229, 440
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	2 cut(s)	36, 438
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	5 cut(s)	98, 395, 560, 584, 587
Fsp4HI	GCNGC	5 cut(s)	98, 395, 560, 584, 587
FspBI	CTAG	2 cut(s)	82, 503
GluI	GCNGC	5 cut(s)	98, 395, 560, 584, 587
GsuI	CTGGAG	2 cut(s)	271, 593
HaeIII	GGCC	5 cut(s)	425, 437, 549, 555, 636
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	2 cut(s)	40, 442
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	4 cut(s)	2, 58, 499, 538
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	2 cut(s)	360, 457
Hpy188I	TCNGA	3 cut(s)	44, 345, 498
Hpy188III	TCNNGA	5 cut(s)	6, 90, 334, 610, 643
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	4 cut(s)	194, 378, 436, 647
HpyCH4III	ACNGT	4 cut(s)	381, 417, 451, 594
HpyCH4V	TGCA	2 cut(s)	454, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 214
HpyF3I	CTNAG	2 cut(s)	398, 473
Hsp92II	CATG	2 cut(s)	40, 442
Kpn2I	TCCGGA	1 cut(s)	333
KspI	CCGCGG	1 cut(s)	584
Kzo9I	GATC	2 cut(s)	325, 620
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	3 cut(s)	28, 252, 336
Lsp1109I	GCAGC	2 cut(s)	546, 598
LweI	GCATC	1 cut(s)	636
MabI	ACCWGGT	1 cut(s)	155
MaeI	CTAG	2 cut(s)	82, 503
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	2 cut(s)	327, 622
MboI	GATC	2 cut(s)	325, 620
MboII	GAAGA	7 cut(s)	78, 102, 276, 286, 298, 385, 417
MflI	RGATCY	1 cut(s)	620
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	2 cut(s)	136, 389
MluNI	TGGCCA	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	4 cut(s)	339, 468, 538, 606
Mox20I	TGGCCA	1 cut(s)	425
MroI	TCCGGA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	1 cut(s)	577
MslI	CAYNNNNRTG	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	2 cut(s)	559, 583
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	2 cut(s)	78, 214
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	325, 620
NlaIII	CATG	2 cut(s)	40, 442
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	445
PciSI	GCTCTTC	1 cut(s)	115
PfeI	GAWTC	3 cut(s)	2, 499, 538
PkrI	GCNGC	5 cut(s)	99, 396, 561, 585, 588
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	2 cut(s)	547, 634
PsuI	RGATCY	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	559
RsaI	GTAC	2 cut(s)	161, 483
RsaNI	GTAC	2 cut(s)	160, 482
RseI	CAYNNNNRTG	1 cut(s)	443
SacII	CCGCGG	1 cut(s)	584
SapI	GCTCTTC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	5 cut(s)	98, 395, 560, 584, 587
Sau3AI	GATC	2 cut(s)	325, 620
Sau96I	GGNCC	2 cut(s)	547, 634
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	157
SetI	ASST	8 cut(s)	74, 83, 158, 210, 341, 350, 447, 561
SexAI	ACCWGGT	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	636
SfcI	CTRYAG	1 cut(s)	542
Sfr303I	CCGCGG	1 cut(s)	584
SgrBI	CCGCGG	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	2 cut(s)	136, 389
SsiI	CCGC	5 cut(s)	98, 121, 394, 581, 583
SspMI	CTAG	2 cut(s)	82, 503
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	3 cut(s)	36, 188, 550
TaaI	ACNGT	4 cut(s)	381, 417, 451, 594
TasI	AATT	2 cut(s)	136, 389
TauI	GCSGC	3 cut(s)	100, 397, 586
TfiI	GAWTC	3 cut(s)	2, 499, 538
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TscAI	CASTG	2 cut(s)	120, 456
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	2 cut(s)	559, 586
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	455
TspRI	CASTG	2 cut(s)	120, 456
XagI	CCTNNNNNAGG	1 cut(s)	532
XapI	RAATTY	1 cut(s)	136
XspI	CTAG	2 cut(s)	82, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.