Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007160

Physical Location & Seq

Genomic Coordinates Reverse (-)

25374313 .. 25376239

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGTTTCAAGTTACTATCCGAAGACTTATTTTCCTGTAACAGCTGTATATCTGGTAGCTCAATATGCTCGCTATGATATGAGAAAAATGGAAGCAGTGAGAGAGAGATTAGAAAAACTTGAAGAAACTGTGAAGGGAATTGCGGCTGAGACGAAGAAACAAACCGTCAATGGCCAAGCAAAAGGCCATGAAGGTGACAGTGCAAAGAAAAGTTTTGGAACTGAGGCAAGTACCCTGGGTTTCAAGGATAGATTAACCGCGGCAGCAACAGTTCCTAACGCTTCTCCAGAGGGCAAGATCCAAGATGGCGGGCCTTCTCAAGATGCGAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Musclin

Protein Analysis

111

Amino Acids

12.15

Weight (kDa)

9.3

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80700 AT1G80980 AT1G80980
fragaria_vesca	FvH4_5g29190 FvH4_5g29190 FvH4_5g29190 FvH4_5g29190
malus_domestica	MD03G1160000.v1.1 MD17G1221100.v1.1
prunus_persica	Prupe.1G199000_v2.0.a1 Prupe.7G069400_v2.0.a1
pyrus_communis	pycom17g22550
rosa_chinensis	RchiOBHm_Chr7g0221831
rosa_laevigata	RLG00000002111
rosa_multiflora	Rmu_sc0005834.1_g000012 Rmu_sc0034732.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237590 Rroxscaffold_3G00237660
rosa_rugosa	Rorug07G0204100 Rorug07G0204100
rosa_samantha	Rh7AG344900 Rh7BG335400 Rh7CG362300 Rh7DG342500
rosa_wichuraiana	Rw7G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	260
AciI	CCGC	4 cut(s)	143, 258, 260, 309
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	172
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	9, 122, 244
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	2 cut(s)	44, 59
AluI	AGCT	2 cut(s)	44, 59
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	3 cut(s)	172, 184, 311
ApeKI	GCWGC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	143
BisI	GCNGC	3 cut(s)	144, 261, 264
BlsI	GCNGC	3 cut(s)	145, 262, 265
Bme1390I	CCNGG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	234, 235, 258
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	234, 235, 258
BseMII	CTCAG	2 cut(s)	138, 213
BseXI	GCAGC	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	3 cut(s)	174, 186, 313
BsmAI	GTCTC	1 cut(s)	143
BsmBI	CGTCTC	1 cut(s)	143
BsnI	GGCC	3 cut(s)	174, 186, 313
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	4 cut(s)	143, 258, 260, 309
BspANI	GGCC	3 cut(s)	174, 186, 313
BspCNI	CTCAG	2 cut(s)	139, 214
BspFNI	CGCG	1 cut(s)	260
BspPI	GGATC	1 cut(s)	292
BssECI	CCNNGG	3 cut(s)	234, 235, 258
BssMI	GATC	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	4 cut(s)	130, 166, 200, 271
BstC8I	GCNNGC	2 cut(s)	70, 311
BstDEI	CTNAG	2 cut(s)	147, 222
BstDSI	CCRYGG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	174, 186, 313
BtgI	CCRYGG	1 cut(s)	258
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	102, 205
Cac8I	GCNNGC	2 cut(s)	70, 311
Cfr13I	GGNCC	1 cut(s)	311
Cfr42I	CCGCGG	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	6 cut(s)	44, 59, 146, 174, 186, 313
CviKI_1	RGCY	6 cut(s)	44, 59, 146, 174, 186, 313
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	2 cut(s)	147, 222
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	1 cut(s)	191
FaiI	YATR	5 cut(s)	49, 66, 75, 80, 189
FatI	CATG	1 cut(s)	187
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	3 cut(s)	144, 261, 264
Fsp4HI	GCNGC	3 cut(s)	144, 261, 264
GluI	GCNGC	3 cut(s)	144, 261, 264
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	3 cut(s)	174, 186, 313
Hin1II	CATG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	287, 320
HpyAV	CCTTC	3 cut(s)	127, 185, 324
HpyCH4III	ACNGT	4 cut(s)	130, 166, 200, 271
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	147, 222
Hsp92II	CATG	1 cut(s)	191
KspI	CCGCGG	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	297
LpnPI	CCDG	5 cut(s)	38, 48, 221, 248, 300
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	1 cut(s)	313
MaeIII	GTNAC	3 cut(s)	11, 37, 194
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	3 cut(s)	34, 134, 166
MflI	RGATCY	1 cut(s)	297
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	1 cut(s)	138
MluNI	TGGCCA	1 cut(s)	174
MnlI	CCTC	2 cut(s)	217, 283
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	174
MspA1I	CMGCKG	2 cut(s)	44, 260
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	194
PasI	CCCWGGG	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	145, 262, 265
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	297
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	192
SacII	CCGCGG	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	3 cut(s)	144, 261, 264
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	3 cut(s)	46, 61, 196
SfaNI	GCATC	1 cut(s)	313
Sfr303I	CCGCGG	1 cut(s)	261
SgrBI	CCGCGG	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	4 cut(s)	143, 258, 260, 309
StyD4I	CCNGG	1 cut(s)	234
TaaI	ACNGT	4 cut(s)	130, 166, 200, 271
TasI	AATT	1 cut(s)	138
TauI	GCSGC	2 cut(s)	146, 263
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	2 cut(s)	102, 205
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	102, 205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.