Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007160

Physical Location & Seq

Genomic Coordinates Forward (+)

40413270 .. 40416094

Gene Structure 2825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTACCACTGCAGCCGAAGATTGCAAGCAATGTTTTGGAGCAGACAAACCTGGGTCCGATTCCAGAAGCAACCATTTTGCTCCAAACCCCCCCATGGTCTGACTACATACGACGAGTCGTTGAAGAAGCTTGACAAGCTAGACTTCCTGACTGCCGCTAAAATGCTCTTCACTGACCCGCCCAAGAAAAAGAAATTTGGGCTTGATTTCCACCTGGTACAACTATTCTTTGCTTGTATGCCTTCCTTGGCTGTATATCTGGTAGCTCAATATGCTCGCTATGATATGAGAAAAATGGAAGCAGAACTGGAGCAGAAAAAGAAGAAACAAGAAGAGAGAGTGGAAGAAATAGAACTAAATGCTACTAAAGAAAAAGAAGCAAGATCGGTTCCGGAGCTTTCGGAGGTGAGAGAGAGATTAGAAAAACTTGAAGAAACTGTGAAGGGAATTGCGGCTGAGACGAAGAAACAAACCGTCAATGGCCAAGCAAAAGGCCATGAAGGTGACAGTGCAAAGAAAAGTTTTGGAACTGAGGCAAGTACCCTGAGTGGTTCAGAATCTAGCAAGCCAGTTGAGAAAGACCCCCTCAAACAGGATTCTGTAGGGCCAAGGCCAGCTGCAAGCAAGGATAGATTAACGGCGGCAGCAACAGTTCCTAATGCTTCTCCAGAGGGCAAGATCCAAGATGGTGGGCCTTCTCAAGATGCTAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Musclin

Protein Analysis

238

Amino Acids

26.84

Weight (kDa)

9.23

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80700 AT1G80980 AT1G80980
fragaria_vesca	FvH4_5g29190 FvH4_5g29190 FvH4_5g29190 FvH4_5g29190
malus_domestica	MD03G1160000.v1.1 MD17G1221100.v1.1
prunus_persica	Prupe.1G199000_v2.0.a1 Prupe.7G069400_v2.0.a1
pyrus_communis	pycom17g22550
rosa_chinensis	RchiOBHm_Chr7g0221831
rosa_laevigata	RLG00000002111
rosa_multiflora	Rmu_sc0005834.1_g000012 Rmu_sc0034732.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237590 Rroxscaffold_3G00237660
rosa_rugosa	Rorug07G0204100 Rorug07G0204100
rosa_samantha	Rh7AG344900 Rh7BG335400 Rh7CG362300 Rh7DG342500
rosa_wichuraiana	Rw7G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	4 cut(s)	156, 179, 452, 641
AclWI	GGATC	1 cut(s)	673
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	3 cut(s)	5, 219, 541
AfiI	CCNNNNNNNGG	2 cut(s)	95, 592
AgsI	TTSAA	2 cut(s)	124, 431
AjnI	CCWGG	2 cut(s)	50, 213
AluBI	AGCT	5 cut(s)	130, 139, 266, 397, 617
AluI	AGCT	5 cut(s)	130, 139, 266, 397, 617
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	673
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	5 cut(s)	481, 493, 605, 611, 692
ApeKI	GCWGC	3 cut(s)	12, 617, 644
ApoI	RAATTY	1 cut(s)	194
AspS9I	GGNCC	3 cut(s)	55, 605, 692
AsuHPI	GGTGA	2 cut(s)	418, 515
AvaII	GGWCC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	483
BbvI	GCAGC	3 cut(s)	24, 604, 656
BccI	CCATC	1 cut(s)	680
BceAI	ACGGC	1 cut(s)	654
BciT130I	CCWGG	2 cut(s)	52, 215
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	2 cut(s)	140, 561
BfmI	CTRYAG	2 cut(s)	10, 600
BisI	GCNGC	6 cut(s)	13, 156, 453, 618, 642, 645
BlsI	GCNGC	6 cut(s)	14, 157, 454, 619, 643, 646
Bme1390I	CCNGG	2 cut(s)	52, 215
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	55, 605, 692
BmiI	GGNNCC	2 cut(s)	56, 390
BmrFI	CCNGG	2 cut(s)	52, 215
BmsI	GCATC	1 cut(s)	694
BpmI	CTGGAG	2 cut(s)	329, 651
BpuEI	CTTGAG	1 cut(s)	684
BsaJI	CCNNGG	4 cut(s)	51, 94, 246, 608
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 592
Bse1I	ACTGG	2 cut(s)	312, 569
Bse3DI	GCAATG	1 cut(s)	36
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	52, 215
BseDI	CCNNGG	4 cut(s)	51, 94, 246, 608
BseLI	CCNNNNNNNGG	2 cut(s)	95, 592
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	447, 522, 536
BseNI	ACTGG	2 cut(s)	312, 569
BseXI	GCAGC	3 cut(s)	24, 604, 656
BshFI	GGCC	5 cut(s)	483, 495, 607, 613, 694
BsiSI	CCGG	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	95, 592
BsmAI	GTCTC	1 cut(s)	452
BsmBI	CGTCTC	1 cut(s)	452
BsnI	GGCC	5 cut(s)	483, 495, 607, 613, 694
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	383, 678
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	4 cut(s)	156, 179, 452, 641
BspANI	GGCC	5 cut(s)	483, 495, 607, 613, 694
BspCNI	CTCAG	3 cut(s)	448, 523, 537
BspEI	TCCGGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	56, 390
BspMAI	CTGCAG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	673
BspQI	GCTCTTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	312, 569
BssECI	CCNNGG	4 cut(s)	51, 94, 246, 608
BssMI	GATC	2 cut(s)	383, 678
BssT1I	CCWWGG	3 cut(s)	94, 246, 608
Bst2UI	CCWGG	2 cut(s)	52, 215
Bst4CI	ACNGT	4 cut(s)	439, 475, 509, 652
Bst6I	CTCTTC	2 cut(s)	173, 327
BstC8I	GCNNGC	5 cut(s)	27, 277, 566, 615, 622
BstDEI	CTNAG	3 cut(s)	456, 531, 545
BstDSI	CCRYGG	1 cut(s)	94
BstENI	CCTNNNNNAGG	1 cut(s)	590
BstKTI	GATC	2 cut(s)	386, 681
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	2 cut(s)	383, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 272
BstNI	CCWGG	2 cut(s)	52, 215
BstSCI	CCNGG	2 cut(s)	50, 213
BstSFI	CTRYAG	2 cut(s)	10, 600
BstV1I	GCAGC	3 cut(s)	24, 604, 656
BstX2I	RGATCY	1 cut(s)	678
BstXI	CCANNNNNNTGG	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	678
BsuRI	GGCC	5 cut(s)	483, 495, 607, 613, 694
BtgI	CCRYGG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	3 cut(s)	7, 171, 514
Cac8I	GCNNGC	5 cut(s)	27, 277, 566, 615, 622
Cfr13I	GGNCC	3 cut(s)	55, 605, 692
CsiI	ACCWGGT	1 cut(s)	213
Csp6I	GTAC	3 cut(s)	4, 218, 540
CviAII	CATG	2 cut(s)	95, 497
CviQI	GTAC	3 cut(s)	4, 218, 540
DdeI	CTNAG	3 cut(s)	456, 531, 545
DpnI	GATC	2 cut(s)	385, 680
DpnII	GATC	2 cut(s)	383, 678
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	2 cut(s)	173, 327
EarI	CTCTTC	2 cut(s)	173, 327
Eco130I	CCWWGG	3 cut(s)	94, 246, 608
Eco47I	GGWCC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	590
EcoRII	CCWGG	2 cut(s)	50, 213
EcoT14I	CCWWGG	3 cut(s)	94, 246, 608
ErhI	CCWWGG	3 cut(s)	94, 246, 608
Esp3I	CGTCTC	1 cut(s)	452
FaeI	CATG	2 cut(s)	98, 500
FaiI	YATR	8 cut(s)	96, 109, 239, 256, 273, 282, 287, 498
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	2 cut(s)	94, 496
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	6 cut(s)	13, 156, 453, 618, 642, 645
Fsp4HI	GCNGC	6 cut(s)	13, 156, 453, 618, 642, 645
FspBI	CTAG	2 cut(s)	140, 561
GluI	GCNGC	6 cut(s)	13, 156, 453, 618, 642, 645
GsuI	CTGGAG	2 cut(s)	329, 651
HaeIII	GGCC	5 cut(s)	483, 495, 607, 613, 694
HapII	CCGG	1 cut(s)	392
Hin1II	CATG	2 cut(s)	98, 500
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	4 cut(s)	60, 116, 557, 596
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	2 cut(s)	418, 515
Hpy188I	TCNGA	4 cut(s)	59, 102, 403, 556
Hpy188III	TCNNGA	5 cut(s)	64, 148, 392, 668, 701
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	252, 436, 494, 705
HpyCH4III	ACNGT	4 cut(s)	439, 475, 509, 652
HpyCH4V	TGCA	4 cut(s)	12, 25, 512, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 272
HpyF3I	CTNAG	3 cut(s)	456, 531, 545
Hsp92II	CATG	2 cut(s)	98, 500
Kpn2I	TCCGGA	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	383, 678
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	4 cut(s)	39, 86, 310, 394
Lsp1109I	GCAGC	3 cut(s)	24, 604, 656
LweI	GCATC	1 cut(s)	694
MabI	ACCWGGT	1 cut(s)	213
MaeI	CTAG	2 cut(s)	140, 561
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	2 cut(s)	385, 680
MboI	GATC	2 cut(s)	383, 678
MboII	GAAGA	8 cut(s)	30, 136, 160, 334, 344, 356, 443, 475
MflI	RGATCY	1 cut(s)	678
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	2 cut(s)	194, 447
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	397, 526, 596, 664
Mox20I	TGGCCA	1 cut(s)	483
MroI	TCCGGA	1 cut(s)	391
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	1 cut(s)	635
MslI	CAYNNNNRTG	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	52, 215
MvaI	CCWGG	2 cut(s)	52, 215
MwoI	GCNNNNNNNGC	2 cut(s)	136, 272
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	383, 678
NlaIII	CATG	2 cut(s)	98, 500
NlaIV	GGNNCC	2 cut(s)	56, 390
NmuCI	GTSAC	1 cut(s)	503
PciSI	GCTCTTC	1 cut(s)	173
PfeI	GAWTC	3 cut(s)	60, 557, 596
PkrI	GCNGC	6 cut(s)	14, 157, 454, 619, 643, 646
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	50, 213
PspGI	CCWGG	2 cut(s)	50, 213
PspN4I	GGNNCC	2 cut(s)	56, 390
PspPI	GGNCC	3 cut(s)	55, 605, 692
PstI	CTGCAG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	678
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	3 cut(s)	5, 219, 541
RsaNI	GTAC	3 cut(s)	4, 218, 540
RseI	CAYNNNNRTG	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	635
SatI	GCNGC	6 cut(s)	13, 156, 453, 618, 642, 645
Sau3AI	GATC	2 cut(s)	383, 678
Sau96I	GGNCC	3 cut(s)	55, 605, 692
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	52, 215
SetI	ASST	9 cut(s)	53, 132, 141, 216, 268, 399, 408, 505, 619
SexAI	ACCWGGT	1 cut(s)	213
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	2 cut(s)	10, 600
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	1 cut(s)	699
SmoI	CTYRAG	1 cut(s)	699
Sse9I	AATT	2 cut(s)	194, 447
SsiI	CCGC	4 cut(s)	156, 179, 452, 641
SspMI	CTAG	2 cut(s)	140, 561
StyD4I	CCNGG	2 cut(s)	50, 213
StyI	CCWWGG	3 cut(s)	94, 246, 608
TaaI	ACNGT	4 cut(s)	439, 475, 509, 652
TasI	AATT	2 cut(s)	194, 447
TauI	GCSGC	3 cut(s)	158, 455, 644
TfiI	GAWTC	3 cut(s)	60, 557, 596
Tru1I	TTAA	1 cut(s)	635
Tru9I	TTAA	1 cut(s)	635
TscAI	CASTG	3 cut(s)	14, 178, 514
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	3 cut(s)	12, 617, 644
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	513
TspRI	CASTG	3 cut(s)	14, 178, 514
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	590
XapI	RAATTY	1 cut(s)	194
XspI	CTAG	2 cut(s)	140, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.