Rroxscaffold_3G00237590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007160
Physical Location & Seq
Reverse (-)
25271590 .. 25275810
4221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237590.1

Sequence Viewer

Length: 501 bp
ATGTACCACTGCAGCCGAAGATTGCAAGCAACGTTTTGGAGCAGACAAACCTGGGTCCAATTCCAGAAGCAACCATTTTGCTCCAAACCCCCCCATGGTCTGACTACATACGACGAGTCGTTGAAGAAGCTTGACAAGCTAGACTTCTTGACTGCTGCTAAAATGCTCTTCACTGATCCGCCCAAGAAAAAGAAATTTGGGAACTGGAGCAGAAAAAAGAAGAAACAAGAAGAGAAAGTGGAAGAAATAGAACTAAATGCTACTAAAGAAAAAGAAGCAAGATCGGTTCCGGAGCTTTTGGAGGTGAGAGAGAGATTAGAAAAACTTGAAGAAACTGTGAAGGGAATTGCAGCTGAGACGAAGAAACAAACCGTCAATGGCCAAGCAAAAGGCCATGAAGGTGACAGTGCGAAGAAAAGTTTTGGAACTGAGGCAAGTACCCTGAGGAGTTCAGAATCTAGCAAGCTAGTTGAGAAAGACCCCTCAAACAGGATTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Musclin

Protein Analysis

166

Amino Acids

19.13

Weight (kDa)

9.56

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 1 cut(s) 179
AclI AACGTT 1 cut(s) 32
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 2 cut(s) 5, 439
AfiI CCNNNNNNNGG 2 cut(s) 95, 489
AgsI TTSAA 2 cut(s) 124, 329
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 5 cut(s) 130, 139, 295, 353, 466
AluI AGCT 5 cut(s) 130, 139, 295, 353, 466
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 289
AoxI GGCC 2 cut(s) 379, 391
ApeKI GCWGC 3 cut(s) 12, 155, 350
ApoI RAATTY 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 316, 413
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 443
BalI TGGCCA 1 cut(s) 381
BbvI GCAGC 3 cut(s) 24, 142, 362
BciT130I CCWGG 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 3 cut(s) 140, 459, 467
BfmI CTRYAG 2 cut(s) 10, 497
BisI GCNGC 3 cut(s) 13, 156, 351
BlsI GCNGC 3 cut(s) 14, 157, 352
Bme1390I CCNGG 1 cut(s) 52
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 56, 288
BmrFI CCNGG 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 51, 94
BsaWI WCCGGW 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 489
Bse1I ACTGG 1 cut(s) 209
Bse21I CCTNAGG 1 cut(s) 443
BseAI TCCGGA 1 cut(s) 289
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 2 cut(s) 51, 94
BseLI CCNNNNNNNGG 2 cut(s) 95, 489
BseMII CTCAG 3 cut(s) 345, 420, 434
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 460
BseXI GCAGC 3 cut(s) 24, 142, 362
BshFI GGCC 2 cut(s) 381, 393
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 2 cut(s) 95, 489
BsmAI GTCTC 1 cut(s) 350
BsmBI CGTCTC 1 cut(s) 350
BsnI GGCC 2 cut(s) 381, 393
Bsp13I TCCGGA 1 cut(s) 289
Bsp143I GATC 2 cut(s) 175, 281
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 1 cut(s) 179
BspANI GGCC 2 cut(s) 381, 393
BspCNI CTCAG 3 cut(s) 346, 421, 435
BspEI TCCGGA 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 56, 288
BspMAI CTGCAG 1 cut(s) 14
BspPI GGATC 1 cut(s) 170
BspQI GCTCTTC 1 cut(s) 173
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 51, 94
BssMI GATC 2 cut(s) 175, 281
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 3 cut(s) 337, 373, 407
Bst6I CTCTTC 2 cut(s) 173, 225
BstC8I GCNNGC 2 cut(s) 27, 464
BstDEI CTNAG 3 cut(s) 354, 429, 443
BstDSI CCRYGG 1 cut(s) 94
BstENI CCTNNNNNAGG 1 cut(s) 487
BstKTI GATC 2 cut(s) 178, 284
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 2 cut(s) 175, 281
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 2 cut(s) 10, 497
BstV1I GCAGC 3 cut(s) 24, 142, 362
Bsu36I CCTNAGG 1 cut(s) 443
BsuRI GGCC 2 cut(s) 381, 393
BtgI CCRYGG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 7
BtsIMutI CAGTG 3 cut(s) 7, 171, 412
Cac8I GCNNGC 2 cut(s) 27, 464
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 4, 438
CviAII CATG 2 cut(s) 95, 395
CviJI RGCY 8 cut(s) 15, 130, 139, 295, 353, 381, 393, 466
CviKI_1 RGCY 8 cut(s) 15, 130, 139, 295, 353, 381, 393, 466
CviQI GTAC 2 cut(s) 4, 438
DdeI CTNAG 3 cut(s) 354, 429, 443
DpnI GATC 2 cut(s) 177, 283
DpnII GATC 2 cut(s) 175, 281
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 2 cut(s) 173, 225
EarI CTCTTC 2 cut(s) 173, 225
EciI GGCGGA 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 443
EcoNI CCTNNNNNAGG 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 2 cut(s) 98, 398
FaiI YATR 3 cut(s) 96, 109, 396
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 2 cut(s) 94, 394
Fnu4HI GCNGC 3 cut(s) 13, 156, 351
Fsp4HI GCNGC 3 cut(s) 13, 156, 351
FspBI CTAG 3 cut(s) 140, 459, 467
GluI GCNGC 3 cut(s) 13, 156, 351
GsuI CTGGAG 1 cut(s) 226
HaeIII GGCC 2 cut(s) 381, 393
HapII CCGG 1 cut(s) 290
Hin1II CATG 2 cut(s) 98, 398
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 116, 455, 493
HpaII CCGG 1 cut(s) 290
HphI GGTGA 2 cut(s) 316, 413
Hpy188I TCNGA 2 cut(s) 102, 454
Hpy188III TCNNGA 3 cut(s) 64, 148, 290
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 334, 392
HpyCH4III ACNGT 3 cut(s) 337, 373, 407
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 12, 25, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 3 cut(s) 354, 429, 443
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 2 cut(s) 98, 398
Kpn2I TCCGGA 1 cut(s) 289
Kzo9I GATC 2 cut(s) 175, 281
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 4 cut(s) 39, 86, 207, 292
LpnPI CCDG 7 cut(s) 37, 64, 77, 190, 303, 455, 475
Lsp1109I GCAGC 3 cut(s) 24, 142, 362
MaeI CTAG 3 cut(s) 140, 459, 467
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 401
MalI GATC 2 cut(s) 177, 283
MboI GATC 2 cut(s) 175, 281
MboII GAAGA 9 cut(s) 30, 136, 160, 232, 242, 254, 341, 373, 424
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 3 cut(s) 59, 194, 345
MluNI TGGCCA 1 cut(s) 381
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 4 cut(s) 295, 424, 438, 493
Mox20I TGGCCA 1 cut(s) 381
MroI TCCGGA 1 cut(s) 289
MscI TGGCCA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 136
NcoI CCATGG 1 cut(s) 94
NdeII GATC 2 cut(s) 175, 281
NlaIII CATG 2 cut(s) 98, 398
NlaIV GGNNCC 2 cut(s) 56, 288
NmuCI GTSAC 1 cut(s) 401
PciSI GCTCTTC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 455, 493
PkrI GCNGC 3 cut(s) 14, 157, 352
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp1406I AACGTT 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 56, 288
PspPI GGNCC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 2 cut(s) 5, 439
RsaNI GTAC 2 cut(s) 4, 438
RseI CAYNNNNRTG 1 cut(s) 399
SapI GCTCTTC 1 cut(s) 173
SatI GCNGC 3 cut(s) 13, 156, 351
Sau3AI GATC 2 cut(s) 175, 281
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 52
SetI ASST 9 cut(s) 35, 53, 132, 141, 297, 306, 355, 403, 468
SfcI CTRYAG 2 cut(s) 10, 497
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 3 cut(s) 59, 194, 345
SsiI CCGC 1 cut(s) 179
SspMI CTAG 3 cut(s) 140, 459, 467
StyD4I CCNGG 1 cut(s) 50
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 3 cut(s) 337, 373, 407
TaiI ACGT 1 cut(s) 35
TasI AATT 3 cut(s) 59, 194, 345
TfiI GAWTC 2 cut(s) 455, 493
TscAI CASTG 3 cut(s) 14, 178, 412
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 3 cut(s) 12, 155, 350
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 411
TspRI CASTG 3 cut(s) 14, 178, 412
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 487
XapI RAATTY 1 cut(s) 194
XspI CTAG 3 cut(s) 140, 459, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.