Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005834.1

Orthogroup ID

OG0007160

Physical Location & Seq

Genomic Coordinates Reverse (-)

38139 .. 38621

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005834.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgcttgttatatggtttccaacggtttcttggttacctttctcaatccttaccaaattttcatcccaggaactggagcagaaaaagaagaaacaagaagagagagtggaagaaatagaactaaatgctactaaagaaaaagaaacaagatcggttccggagctttcggaggtgagagagagattagaaaaacttgaagaaactgtgaagggaattgcggctgagacgaagaaacaaaccgtcaatggccaagcaaaaggccatgaaggtgacagtgcaaagaaaagttttggaactgaggcaagtaccccgagtagttcagaatctagcaagccagttgagaaagaccccctcaaacaggattctgtagggccaaggccagctgcaagcaaggatagattaaccgcggcagcaacagttcctaatgcttctccagagggcaagatccaagatggtgggccttctcaagatgctaaaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Musclin

Protein Analysis

160

Amino Acids

17.55

Weight (kDa)

6.66

Isoelectric Point (pI)

63.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80700 AT1G80980 AT1G80980
fragaria_vesca	FvH4_5g29190 FvH4_5g29190 FvH4_5g29190 FvH4_5g29190
malus_domestica	MD03G1160000.v1.1 MD17G1221100.v1.1
prunus_persica	Prupe.1G199000_v2.0.a1 Prupe.7G069400_v2.0.a1
pyrus_communis	pycom17g22550
rosa_chinensis	RchiOBHm_Chr7g0221831
rosa_laevigata	RLG00000002111
rosa_multiflora	Rmu_sc0005834.1_g000012 Rmu_sc0034732.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237590 Rroxscaffold_3G00237660
rosa_rugosa	Rorug07G0204100 Rorug07G0204100
rosa_samantha	Rh7AG344900 Rh7BG335400 Rh7CG362300 Rh7DG342500
rosa_wichuraiana	Rw7G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccII	CGCG	1 cut(s)	407
AccIII	TCCGGA	1 cut(s)	157
AciI	CCGC	3 cut(s)	218, 405, 407
AclWI	GGATC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	2 cut(s)	73, 358
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	2 cut(s)	163, 383
AluI	AGCT	2 cut(s)	163, 383
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	439
AlwNI	CAGNNNCTG	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	310
Aor13HI	TCCGGA	1 cut(s)	157
AoxI	GGCC	5 cut(s)	247, 259, 371, 377, 458
ApeKI	GCWGC	2 cut(s)	383, 410
ApoI	RAATTY	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	371, 458
AsuHPI	GGTGA	2 cut(s)	184, 281
AvaI	CYCGRG	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	370, 422
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	4 cut(s)	219, 384, 408, 411
BlsI	GCNGC	4 cut(s)	220, 385, 409, 412
Bme1390I	CCNGG	1 cut(s)	68
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	371, 458
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	460
BpmI	CTGGAG	2 cut(s)	95, 417
BpuEI	CTTGAG	1 cut(s)	450
BsaJI	CCNNGG	3 cut(s)	66, 374, 405
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 358
Bse1I	ACTGG	2 cut(s)	78, 335
BseAI	TCCGGA	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	3 cut(s)	66, 374, 405
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	73, 358
BseMII	CTCAG	2 cut(s)	213, 288
BseNI	ACTGG	2 cut(s)	78, 335
BseXI	GCAGC	2 cut(s)	370, 422
Bsh1236I	CGCG	1 cut(s)	407
BshFI	GGCC	5 cut(s)	249, 261, 373, 379, 460
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	73, 358
BsmAI	GTCTC	1 cut(s)	218
BsmBI	CGTCTC	1 cut(s)	218
BsnI	GGCC	5 cut(s)	249, 261, 373, 379, 460
BsoBI	CYCGRG	1 cut(s)	310
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	149, 444
BspACI	CCGC	3 cut(s)	218, 405, 407
BspANI	GGCC	5 cut(s)	249, 261, 373, 379, 460
BspCNI	CTCAG	2 cut(s)	214, 289
BspEI	TCCGGA	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	439
BsrI	ACTGG	2 cut(s)	78, 335
BssECI	CCNNGG	3 cut(s)	66, 374, 405
BssMI	GATC	2 cut(s)	149, 444
BssT1I	CCWWGG	1 cut(s)	374
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	5 cut(s)	25, 205, 241, 275, 418
Bst6I	CTCTTC	1 cut(s)	93
BstC8I	GCNNGC	3 cut(s)	332, 381, 388
BstDEI	CTNAG	2 cut(s)	222, 297
BstDSI	CCRYGG	1 cut(s)	405
BstEII	GGTNACC	1 cut(s)	33
BstENI	CCTNNNNNAGG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	407
BstKTI	GATC	2 cut(s)	152, 447
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	2 cut(s)	149, 444
BstNI	CCWGG	1 cut(s)	68
BstPI	GGTNACC	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	370, 422
BstX2I	RGATCY	1 cut(s)	444
BstXI	CCANNNNNNTGG	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	5 cut(s)	249, 261, 373, 379, 460
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	3 cut(s)	332, 381, 388
CaiI	CAGNNNCTG	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	371, 458
Cfr42I	CCGCGG	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	9 cut(s)	163, 221, 249, 261, 334, 373, 379, 383, 460
CviKI_1	RGCY	9 cut(s)	163, 221, 249, 261, 334, 373, 379, 383, 460
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	2 cut(s)	222, 297
DpnI	GATC	2 cut(s)	151, 446
DpnII	GATC	2 cut(s)	149, 444
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	310
Eco91I	GGTNACC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	356
EcoO65I	GGTNACC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	374
Esp3I	CGTCTC	1 cut(s)	218
FaeI	CATG	1 cut(s)	266
FaiI	YATR	3 cut(s)	11, 13, 264
FatI	CATG	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	219, 384, 408, 411
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	4 cut(s)	219, 384, 408, 411
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	4 cut(s)	219, 384, 408, 411
GsuI	CTGGAG	2 cut(s)	95, 417
HaeIII	GGCC	5 cut(s)	249, 261, 373, 379, 460
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	2 cut(s)	323, 362
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	184, 281
Hpy188I	TCNGA	2 cut(s)	169, 322
Hpy188III	TCNNGA	3 cut(s)	158, 434, 467
HpyAV	CCTTC	3 cut(s)	202, 260, 471
HpyCH4III	ACNGT	5 cut(s)	25, 205, 241, 275, 418
HpyCH4V	TGCA	2 cut(s)	278, 386
HpyF3I	CTNAG	2 cut(s)	222, 297
Hsp92II	CATG	1 cut(s)	266
Kpn2I	TCCGGA	1 cut(s)	157
KspI	CCGCGG	1 cut(s)	408
Kzo9I	GATC	2 cut(s)	149, 444
LmnI	GCTCC	2 cut(s)	76, 160
LpnPI	CCDG	8 cut(s)	53, 59, 80, 171, 344, 348, 393, 447
Lsp1109I	GCAGC	2 cut(s)	370, 422
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	33, 269
MalI	GATC	2 cut(s)	151, 446
MboI	GATC	2 cut(s)	149, 444
MboII	GAAGA	5 cut(s)	100, 110, 122, 209, 241
MflI	RGATCY	1 cut(s)	444
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	2 cut(s)	56, 213
MluNI	TGGCCA	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	4 cut(s)	163, 292, 362, 430
Mox20I	TGGCCA	1 cut(s)	249
MroI	TCCGGA	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	249
MspA1I	CMGCKG	2 cut(s)	383, 407
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	407
NdeII	GATC	2 cut(s)	149, 444
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	323, 362
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	4 cut(s)	220, 385, 409, 412
Psp6I	CCWGG	1 cut(s)	66
PspEI	GGTNACC	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	371, 458
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	444
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
RseI	CAYNNNNRTG	1 cut(s)	267
SacII	CCGCGG	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	4 cut(s)	219, 384, 408, 411
Sau3AI	GATC	2 cut(s)	149, 444
Sau96I	GGNCC	2 cut(s)	371, 458
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	5 cut(s)	40, 165, 174, 271, 385
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	366
Sfr303I	CCGCGG	1 cut(s)	408
SgrBI	CCGCGG	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
Sse9I	AATT	2 cut(s)	56, 213
SsiI	CCGC	3 cut(s)	218, 405, 407
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	5 cut(s)	25, 205, 241, 275, 418
TasI	AATT	2 cut(s)	56, 213
TauI	GCSGC	2 cut(s)	221, 410
TfiI	GAWTC	2 cut(s)	323, 362
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	2 cut(s)	383, 410
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	51, 279
TspRI	CASTG	1 cut(s)	280
Van91I	CCANNNNNTGG	1 cut(s)	73
XagI	CCTNNNNNAGG	1 cut(s)	356
XapI	RAATTY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.