Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010105

Physical Location & Seq

Genomic Coordinates Reverse (-)

265022 .. 265948

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCAGATTCCGACATAGAGACGAGCAGCAACCAAAATAGCAATAGCAACACCAGCCATTCAACTACTTCAACCACGAGTGTTCATGTTACGGCTCTCGATGGGATTGTAAGTGCTAATTCTCTCTTCACGGTTGCAGTCTTTGTCGGAATCTCCTTCGACCAGCCAAGTGACCTCACCCTCACGGACAGAACAGAGTGCAGTGCAGGACGAGACGTGGAACGTGACCTGGTTGTGTTTGAAGTCATCTCATTTGCCTTCTTTCTCTTCTCCTCCCTTGTGGCTCAAGGGATGAAGCTAGCCATCAACCTTTTGAACAGCAAAGAAACGGACGAAGTGTTTAAAGCGAATATCAACAGAGATGTGCTTCGTTTCGGTGTGGTTGGTGCAGCTGGTGGATCTATCTTGGGTTGTGTATTTCTTCTGTTGTCAATTGTTGATGTTATACAACTCCGTCTGGGGCTTCTCTCTTGCGGCAATGCTTTGGCGATTCATACCGTGCTGGTGCTTGTGGTATTGGTCTCTTCTGCTCTCAGTGTTTATATCTTCACAGTGTTCTACTCTTTCAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.44

Weight (kDa)

4.86

Isoelectric Point (pI)

24.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01580 AT3G07510 AT3G07510 AT3G07510
fragaria_vesca	FvH4_2g17600 FvH4_2g17600
malus_domestica	MD05G1155400.v1.1 MD05G1155900.v1.1 MD05G1156100.v1.1 MD10G1149800.v1.1
prunus_persica	Prupe.8G188200_v2.0.a1
pyrus_communis	pycom10g12920
rosa_chinensis	RchiOBHm_Chr6g0282541
rosa_laevigata	RLG00000012886
rosa_multiflora	Rmu_co8275275.1_g000001 Rmu_sc0005697.1_g000012
rosa_roxburghii	Rroxscaffold_7G00186280
rosa_rugosa	Rorug06G0147400
rosa_samantha	Rh6AG260600 Rh6BG263800
rosa_wichuraiana	Rw6G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	474
AclWI	GGATC	1 cut(s)	406
AgsI	TTSAA	4 cut(s)	63, 72, 242, 316
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	2 cut(s)	298, 392
AluI	AGCT	2 cut(s)	298, 392
Alw26I	GTCTC	3 cut(s)	14, 207, 526
AlwI	GGATC	1 cut(s)	406
ApeKI	GCWGC	2 cut(s)	27, 389
AsuHPI	GGTGA	1 cut(s)	169
AsuNHI	GCTAGC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	39, 401
BccI	CCATC	2 cut(s)	95, 311
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	1 cut(s)	230
BcoDI	GTCTC	3 cut(s)	14, 207, 526
BfaI	CTAG	1 cut(s)	299
BisI	GCNGC	3 cut(s)	28, 390, 475
BlsI	GCNGC	3 cut(s)	29, 391, 476
Bme1390I	CCNGG	1 cut(s)	230
BmgBI	CACGTC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	230
BmtI	GCTAGC	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	526
Bse3DI	GCAATG	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	1 cut(s)	547
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	39, 401
BsgI	GTGCAG	3 cut(s)	220, 225, 408
BsmAI	GTCTC	3 cut(s)	14, 207, 526
BsmBI	CGTCTC	2 cut(s)	14, 207
Bso31I	GGTCTC	1 cut(s)	526
Bsp143I	GATC	1 cut(s)	398
BspACI	CCGC	1 cut(s)	474
BspCNI	CTCAG	1 cut(s)	546
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	406
BspTNI	GGTCTC	1 cut(s)	526
BsrDI	GCAATG	1 cut(s)	484
BssMI	GATC	1 cut(s)	398
BssSI	CACGAG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	3 cut(s)	133, 499, 553
Bst6I	CTCTTC	3 cut(s)	131, 272, 529
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	533
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	1 cut(s)	401
BstMAI	GTCTC	3 cut(s)	14, 207, 526
BstMBI	GATC	1 cut(s)	398
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	39, 401
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	297
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	3 cut(s)	208, 541, 558
Cac8I	GCNNGC	1 cut(s)	300
CsiI	ACCWGGT	1 cut(s)	228
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	8 cut(s)	57, 95, 166, 284, 298, 302, 392, 463
CviKI_1	RGCY	8 cut(s)	57, 95, 166, 284, 298, 302, 392, 463
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	1 cut(s)	400
DpnII	GATC	1 cut(s)	398
DraI	TTTAAA	1 cut(s)	343
Eam1104I	CTCTTC	3 cut(s)	131, 272, 529
EarI	CTCTTC	3 cut(s)	131, 272, 529
Eco31I	GGTCTC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	228
Esp3I	CGTCTC	2 cut(s)	14, 207
FaeI	CATG	1 cut(s)	89
FaiI	YATR	5 cut(s)	17, 87, 446, 495, 543
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	3 cut(s)	28, 390, 475
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	28, 390, 475
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	3 cut(s)	28, 390, 475
Hin1II	CATG	1 cut(s)	89
HinfI	GANTC	3 cut(s)	8, 150, 490
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	13, 149
Hpy188III	TCNNGA	2 cut(s)	98, 568
HpyAV	CCTTC	2 cut(s)	166, 268
HpyCH4III	ACNGT	3 cut(s)	133, 499, 553
HpyCH4IV	ACGT	2 cut(s)	216, 223
HpyCH4V	TGCA	4 cut(s)	137, 201, 206, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	533
HpySE526I	ACGT	2 cut(s)	216, 223
Hsp92II	CATG	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	398
LpnPI	CCDG	9 cut(s)	67, 176, 192, 215, 242, 378, 443, 488, 553
Lsp1109I	GCAGC	2 cut(s)	39, 401
MabI	ACCWGGT	1 cut(s)	228
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	2 cut(s)	216, 223
MaeIII	GTNAC	3 cut(s)	88, 170, 224
MalI	GATC	1 cut(s)	400
MboI	GATC	1 cut(s)	398
MboII	GAAGA	5 cut(s)	118, 259, 413, 516, 538
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	398
MluCI	AATT	2 cut(s)	118, 432
MmeI	TCCRAC	2 cut(s)	36, 127
MnlI	CCTC	3 cut(s)	185, 191, 283
MseI	TTAA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	1 cut(s)	398
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	89
NmuCI	GTSAC	2 cut(s)	170, 224
PfeI	GAWTC	3 cut(s)	8, 150, 490
PkrI	GCNGC	3 cut(s)	29, 391, 476
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	28, 390, 475
Sau3AI	GATC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	7 cut(s)	177, 219, 226, 231, 300, 312, 394
SexAI	ACCWGGT	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	2 cut(s)	118, 432
SsiI	CCGC	1 cut(s)	474
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	3 cut(s)	133, 499, 553
TaiI	ACGT	2 cut(s)	219, 226
TaqI	TCGA	2 cut(s)	99, 159
TasI	AATT	2 cut(s)	118, 432
TauI	GCSGC	1 cut(s)	477
TfiI	GAWTC	3 cut(s)	8, 150, 490
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	3 cut(s)	208, 541, 558
TseFI	GTSAC	2 cut(s)	170, 224
TseI	GCWGC	2 cut(s)	27, 389
Tsp45I	GTSAC	2 cut(s)	170, 224
TspDTI	ATGAA	3 cut(s)	74, 308, 482
TspGWI	ACGGA	3 cut(s)	200, 344, 443
TspRI	CASTG	3 cut(s)	208, 541, 558
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.