Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010105

Physical Location & Seq

Genomic Coordinates Forward (+)

23703601 .. 23704887

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1149800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGATGAATCTGACGACTACCCAAAAGAGTGCTACACCCAAGACGGCCGGAGAGTGATGTCGTCATCGTCAACGACGAGCGTGCACGTCACGGCGCTGGACGGCCTGGTCAACGTCAACTCACTCTTCACCATCGCCGTCTTCGTGGGGCTCTCCCTGACAACTCCGGGACAGAGGAGCCTCGAGAACCGGACATCCTGCGACGCCGGGATCGACGTGGCGAAGAAGCTGCTGGTGTTCGAGGTTGTCTCCTTCAGCTTCTTCCTGTTCTCGTCGCTGGTGGCGCAGGGACTGAAGCTGGCGATCAACCTGCTCAACAGCAAAGACGTCGACGAGGCGTTCCGGGCCCACATCAATCTGAAGGCGTTGAGATTCGGGATGTTGGGGTCCGCTTTCGGATCGGTCATGGGTTGTGTGTTTTTGGTGCTGTCGATGGTGAATGTGATTCAGATCAGGCTGGGGATGCTGTCGTGTGGCAGCAAATCCGCCGTCCATTCCGTGGCGGCGCTTGTTGTATTGGTCACGACGGCGCTTCTGGTCTATATTTCCACTGCTGTTTATGCTTTTCTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

20.51

Weight (kDa)

6.89

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01580 AT3G07510 AT3G07510 AT3G07510
fragaria_vesca	FvH4_2g17600 FvH4_2g17600
malus_domestica	MD05G1155400.v1.1 MD05G1155900.v1.1 MD05G1156100.v1.1 MD10G1149800.v1.1
prunus_persica	Prupe.8G188200_v2.0.a1
pyrus_communis	pycom10g12920
rosa_chinensis	RchiOBHm_Chr6g0282541
rosa_laevigata	RLG00000012886
rosa_multiflora	Rmu_co8275275.1_g000001 Rmu_sc0005697.1_g000012
rosa_roxburghii	Rroxscaffold_7G00186280
rosa_rugosa	Rorug06G0147400
rosa_samantha	Rh6AG260600 Rh6BG263800
rosa_wichuraiana	Rw6G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AatII	GACGTC	1 cut(s)	330
Acc36I	ACCTGC	1 cut(s)	318
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	3 cut(s)	390, 486, 503
AclWI	GGATC	2 cut(s)	218, 406
AcoI	YGGCCR	1 cut(s)	46
AcuI	CTGAAG	3 cut(s)	238, 314, 380
AcyI	GRCGYC	2 cut(s)	204, 327
AfiI	CCNNNNNNNGG	1 cut(s)	499
AjiI	CACGTC	2 cut(s)	88, 217
AjnI	CCWGG	1 cut(s)	105
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
AluBI	AGCT	3 cut(s)	229, 258, 298
AluI	AGCT	3 cut(s)	229, 258, 298
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	253
Alw44I	GTGCAC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	218, 406
AlwNI	CAGNNNCTG	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	3 cut(s)	46, 103, 345
ApaI	GGGCCC	1 cut(s)	349
ApaLI	GTGCAC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	229, 477
ArsI	GACNNNNNNTTYG	2 cut(s)	474, 506
AspLEI	GCGC	4 cut(s)	97, 286, 508, 532
AspS9I	GGNCC	3 cut(s)	345, 346, 387
AsuC2I	CCSGG	3 cut(s)	168, 208, 344
AsuHPI	GGTGA	2 cut(s)	121, 448
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	387
BaeGI	GKGCMC	2 cut(s)	87, 349
BanII	GRGCYC	2 cut(s)	153, 349
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	216, 489
BccI	CCATC	2 cut(s)	140, 427
BceAI	ACGGC	6 cut(s)	61, 108, 118, 122, 473, 543
BcgI	CGANNNNNNTGC	8 cut(s)	64, 98, 211, 245, 292, 310, 326, 344
BciT130I	CCWGG	1 cut(s)	107
BcnI	CCSGG	3 cut(s)	168, 208, 344
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	1 cut(s)	574
BfoI	RGCGCY	3 cut(s)	98, 509, 533
BfuAI	ACCTGC	1 cut(s)	318
BisI	GCNGC	3 cut(s)	230, 478, 504
BlsI	GCNGC	3 cut(s)	231, 479, 505
Bme1390I	CCNGG	4 cut(s)	107, 168, 208, 344
Bme18I	GGWCC	1 cut(s)	387
BmeT110I	CYCGRG	1 cut(s)	182
BmgBI	CACGTC	2 cut(s)	88, 217
BmgT120I	GGNCC	3 cut(s)	345, 346, 387
BmiI	GGNNCC	3 cut(s)	179, 347, 388
BmrFI	CCNGG	4 cut(s)	107, 168, 208, 344
BmsI	GCATC	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpuMI	CCSGG	3 cut(s)	168, 208, 344
BsaBI	GATNNNNATC	1 cut(s)	449
BsaHI	GRCGYC	2 cut(s)	204, 327
BsaJI	CCNNGG	1 cut(s)	498
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse8I	GATNNNNATC	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	4 cut(s)	10, 194, 384, 468
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	2 cut(s)	87, 349
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	216, 489
BseYI	CCCAGC	1 cut(s)	457
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	3 cut(s)	48, 105, 347
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	5 cut(s)	49, 167, 190, 207, 343
BslFI	GGGAC	2 cut(s)	183, 303
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	2 cut(s)	183, 303
BsnI	GGCC	3 cut(s)	48, 105, 347
BsoBI	CYCGRG	1 cut(s)	182
Bsp120I	GGGCCC	1 cut(s)	345
Bsp1286I	GDGCHC	3 cut(s)	87, 153, 349
Bsp143I	GATC	4 cut(s)	210, 303, 398, 450
BspACI	CCGC	3 cut(s)	390, 486, 503
BspANI	GGCC	3 cut(s)	48, 105, 347
BspLI	GGNNCC	3 cut(s)	179, 347, 388
BspMI	ACCTGC	1 cut(s)	318
BspPI	GGATC	2 cut(s)	218, 406
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	4 cut(s)	210, 303, 398, 450
BssNI	GRCGYC	2 cut(s)	204, 327
Bst2UI	CCWGG	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	2 cut(s)	204, 327
BstC8I	GCNNGC	2 cut(s)	83, 300
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	4 cut(s)	10, 194, 384, 468
BstH2I	RGCGCY	3 cut(s)	98, 509, 533
BstHHI	GCGC	4 cut(s)	97, 286, 508, 532
BstKTI	GATC	4 cut(s)	213, 306, 401, 453
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	4 cut(s)	210, 303, 398, 450
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	4 cut(s)	283, 344, 463, 560
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	4 cut(s)	105, 166, 206, 342
BstSLI	GKGCMC	2 cut(s)	87, 349
BstV1I	GCAGC	2 cut(s)	216, 489
BstV2I	GAAGAC	1 cut(s)	133
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	48, 105, 347
BtgI	CCRYGG	1 cut(s)	498
BtgZI	GCGATG	1 cut(s)	118
BtrI	CACGTC	2 cut(s)	88, 217
BtsCI	GGATG	4 cut(s)	10, 194, 384, 468
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	549
BveI	ACCTGC	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	83, 300
CaiI	CAGNNNCTG	1 cut(s)	292
CfoI	GCGC	4 cut(s)	97, 286, 508, 532
Cfr13I	GGNCC	3 cut(s)	345, 346, 387
CseI	GACGC	1 cut(s)	212
CviAII	CATG	1 cut(s)	406
CviJI	RGCY	9 cut(s)	48, 105, 151, 180, 229, 258, 298, 347, 457
CviKI_1	RGCY	9 cut(s)	48, 105, 151, 180, 229, 258, 298, 347, 457
DpnI	GATC	4 cut(s)	212, 305, 400, 452
DpnII	GATC	4 cut(s)	210, 303, 398, 450
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	475
EclXI	CGGCCG	1 cut(s)	46
Eco24I	GRGCYC	2 cut(s)	153, 349
Eco47I	GGWCC	1 cut(s)	387
Eco52I	CGGCCG	1 cut(s)	46
Eco57I	CTGAAG	3 cut(s)	238, 314, 380
Eco88I	CYCGRG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	105
EcoT38I	GRGCYC	2 cut(s)	153, 349
FaeI	CATG	1 cut(s)	409
FaiI	YATR	3 cut(s)	407, 543, 561
FaqI	GGGAC	2 cut(s)	183, 303
FatI	CATG	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	230, 478, 504
FokI	GGATG	4 cut(s)	17, 181, 391, 475
FriOI	GRGCYC	2 cut(s)	153, 349
Fsp4HI	GCNGC	3 cut(s)	230, 478, 504
FspBI	CTAG	1 cut(s)	574
GlaI	GCGC	4 cut(s)	96, 285, 507, 531
GluI	GCNGC	3 cut(s)	230, 478, 504
GsaI	CCCAGC	1 cut(s)	461
HaeII	RGCGCY	3 cut(s)	98, 509, 533
HaeIII	GGCC	3 cut(s)	48, 105, 347
HapII	CCGG	5 cut(s)	49, 167, 190, 207, 343
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	4 cut(s)	97, 286, 508, 532
Hin1I	GRCGYC	2 cut(s)	204, 327
Hin1II	CATG	1 cut(s)	409
Hin6I	GCGC	4 cut(s)	95, 284, 506, 530
HinP1I	GCGC	4 cut(s)	95, 284, 506, 530
HincII	GTYRAC	4 cut(s)	72, 112, 118, 331
HindII	GTYRAC	4 cut(s)	72, 112, 118, 331
HinfI	GANTC	3 cut(s)	8, 372, 445
HpaII	CCGG	5 cut(s)	49, 167, 190, 207, 343
HphI	GGTGA	2 cut(s)	121, 448
Hpy166II	GTNNAC	5 cut(s)	72, 85, 112, 118, 331
Hpy188I	TCNGA	4 cut(s)	13, 360, 398, 450
Hpy188III	TCNNGA	3 cut(s)	184, 376, 523
Hpy8I	GTNNAC	5 cut(s)	72, 85, 112, 118, 331
Hpy99I	CGWCG	7 cut(s)	79, 206, 218, 277, 332, 335, 529
HpyAV	CCTTC	2 cut(s)	262, 355
HpyCH4IV	ACGT	4 cut(s)	87, 114, 216, 327
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	4 cut(s)	283, 344, 463, 560
HpySE526I	ACGT	4 cut(s)	87, 114, 216, 327
Hsp92I	GRCGYC	2 cut(s)	204, 327
Hsp92II	CATG	1 cut(s)	409
HspAI	GCGC	4 cut(s)	95, 284, 506, 530
Kzo9I	GATC	4 cut(s)	210, 303, 398, 450
LmnI	GCTCC	1 cut(s)	177
Lsp1109I	GCAGC	2 cut(s)	216, 489
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	1 cut(s)	574
MaeII	ACGT	4 cut(s)	87, 114, 216, 327
MaeIII	GTNAC	2 cut(s)	88, 520
MalI	GATC	4 cut(s)	212, 305, 400, 452
MboI	GATC	4 cut(s)	210, 303, 398, 450
MboII	GAAGA	5 cut(s)	118, 133, 235, 253, 560
MhlI	GDGCHC	3 cut(s)	87, 153, 349
MnlI	CCTC	4 cut(s)	168, 191, 235, 328
MspI	CCGG	5 cut(s)	49, 167, 190, 207, 343
MspR9I	CCNGG	4 cut(s)	107, 168, 208, 344
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	4 cut(s)	283, 344, 463, 560
NciI	CCSGG	3 cut(s)	168, 208, 344
NdeII	GATC	4 cut(s)	210, 303, 398, 450
NlaIII	CATG	1 cut(s)	409
NlaIV	GGNNCC	3 cut(s)	179, 347, 388
NmuCI	GTSAC	2 cut(s)	88, 520
PaeR7I	CTCGAG	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	3 cut(s)	74, 141, 210
PfeI	GAWTC	3 cut(s)	8, 372, 445
PflMI	CCANNNNNTGG	1 cut(s)	499
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	231, 479, 505
Psp6I	CCWGG	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	179, 347, 388
PspOMI	GGGCCC	1 cut(s)	345
PspPI	GGNCC	3 cut(s)	345, 346, 387
PstNI	CAGNNNCTG	1 cut(s)	292
SalI	GTCGAC	1 cut(s)	329
SatI	GCNGC	3 cut(s)	230, 478, 504
Sau3AI	GATC	4 cut(s)	210, 303, 398, 450
Sau96I	GGNCC	3 cut(s)	345, 346, 387
ScrFI	CCNGG	4 cut(s)	107, 168, 208, 344
SduI	GDGCHC	3 cut(s)	87, 153, 349
SetI	ASST	9 cut(s)	90, 117, 219, 231, 246, 260, 300, 312, 330
SfaNI	GCATC	1 cut(s)	453
Sfr274I	CTCGAG	1 cut(s)	182
SgrDI	CGTCGACG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	387
SlaI	CTCGAG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SsiI	CCGC	3 cut(s)	390, 486, 503
SspMI	CTAG	1 cut(s)	574
StyD4I	CCNGG	4 cut(s)	105, 166, 206, 342
TaiI	ACGT	4 cut(s)	90, 117, 219, 330
TaqI	TCGA	5 cut(s)	183, 213, 240, 330, 431
TaqII	GACCGA	1 cut(s)	391
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	3 cut(s)	8, 372, 445
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	2 cut(s)	88, 520
TseI	GCWGC	2 cut(s)	229, 477
Tsp45I	GTSAC	2 cut(s)	88, 520
TspDTI	ATGAA	1 cut(s)	21
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	1 cut(s)	556
Van91I	CCANNNNNTGG	1 cut(s)	499
VneI	GTGCAC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	387
XhoI	CTCGAG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	1 cut(s)	574
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.