Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010105

Physical Location & Seq

Genomic Coordinates Forward (+)

47885415 .. 47889446

Gene Structure 4032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG263800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCGTCCTCATCAACCACAAGCGTCCACGTCACCGCCCTGGACGGTCTGGTCAACGTCAACTCCCTCTTCACCATCGCGGTCTTCGTGGGCCTGTCCCTGACCGTGCCGGGACAAAAGAGCCTCGAGAACCGGACAGCCTGCGACGCCGGCACTGACGTGGCGAAGAAGCTTCTGGTGTTCGAGGTTGTCTCCTTCAGCTTCTTCCTCTTCTCGTCCCTGGTCGCCCAGGGCCTCAAGCTCGCCATCAACTTGCTTAACAGCAAGGAAGTCGACGAGGCCTTCCGGGCCCACATCAACATCAAGGTGCTGAGGTTCGGGATGTTGGGGTCGGCCTTCGGATCCGTCATGGGTTGCGTCTTTCTCATGTTGTCGATGGTCAATGTGATCCAGATCCGGTTGGGGATGTTGTCGTGTGGGAGCAAATCTGCTGTCCACTCTGTTGCGGCTCTTATCGTTTTGGTCTCTTCGGCGCTCTTGGTCTATCTCTCTACTGCTATCTATGCTTTTCTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.24

Weight (kDa)

8.91

Isoelectric Point (pI)

25.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01580 AT3G07510 AT3G07510 AT3G07510
fragaria_vesca	FvH4_2g17600 FvH4_2g17600
malus_domestica	MD05G1155400.v1.1 MD05G1155900.v1.1 MD05G1156100.v1.1 MD10G1149800.v1.1
prunus_persica	Prupe.8G188200_v2.0.a1
pyrus_communis	pycom10g12920
rosa_chinensis	RchiOBHm_Chr6g0282541
rosa_laevigata	RLG00000012886
rosa_multiflora	Rmu_co8275275.1_g000001 Rmu_sc0005697.1_g000012
rosa_roxburghii	Rroxscaffold_7G00186280
rosa_rugosa	Rorug06G0147400
rosa_samantha	Rh6AG260600 Rh6BG263800
rosa_wichuraiana	Rw6G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	80
AciI	CCGC	3 cut(s)	36, 80, 446
AclWI	GGATC	4 cut(s)	336, 349, 382, 388
AcuI	CTGAAG	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	147
AjiI	CACGTC	2 cut(s)	31, 160
AjnI	CCWGG	3 cut(s)	39, 219, 228
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	3 cut(s)	172, 201, 241
AluI	AGCT	3 cut(s)	172, 201, 241
Alw26I	GTCTC	2 cut(s)	196, 469
AlwI	GGATC	4 cut(s)	336, 349, 382, 388
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	5 cut(s)	91, 232, 279, 288, 333
ApaI	GGGCCC	1 cut(s)	292
ArsI	GACNNNNNNTTYG	2 cut(s)	417, 449
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	4 cut(s)	91, 232, 288, 289
AsuC2I	CCSGG	2 cut(s)	111, 287
AsuHPI	GGTGA	2 cut(s)	25, 64
AvaI	CYCGRG	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	292
BamHI	GGATCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	76
BbvCI	CCTCAGC	1 cut(s)	311
BccI	CCATC	3 cut(s)	83, 254, 370
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BciT130I	CCWGG	3 cut(s)	41, 221, 230
BcnI	CCSGG	2 cut(s)	111, 287
BcoDI	GTCTC	2 cut(s)	196, 469
BfaI	CTAG	1 cut(s)	517
BfoI	RGCGCY	1 cut(s)	476
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	5 cut(s)	41, 111, 221, 230, 287
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	2 cut(s)	31, 160
BmgT120I	GGNCC	4 cut(s)	91, 232, 288, 289
BmiI	GGNNCC	2 cut(s)	290, 343
BmrFI	CCNGG	5 cut(s)	41, 111, 221, 230, 287
BpiI	GAAGAC	1 cut(s)	76
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
Bpu10I	CCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	2 cut(s)	111, 287
BsaBI	GATNNNNATC	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	469
BsaJI	CCNNGG	4 cut(s)	39, 219, 228, 229
BsaWI	WCCGGW	2 cut(s)	132, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse118I	RCCGGY	1 cut(s)	149
Bse8I	GATNNNNATC	1 cut(s)	392
BseBI	CCWGG	3 cut(s)	41, 221, 230
BseDI	CCNNGG	4 cut(s)	39, 219, 228, 229
BseGI	GGATG	2 cut(s)	327, 411
BseJI	GATNNNNATC	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	302
BseSI	GKGCMC	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	5 cut(s)	93, 234, 281, 290, 335
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	5 cut(s)	110, 133, 150, 286, 397
BslFI	GGGAC	3 cut(s)	82, 126, 202
BsmAI	GTCTC	2 cut(s)	196, 469
BsmFI	GGGAC	3 cut(s)	82, 126, 202
BsnI	GGCC	5 cut(s)	93, 234, 281, 290, 335
Bso31I	GGTCTC	1 cut(s)	469
BsoBI	CYCGRG	1 cut(s)	125
Bsp120I	GGGCCC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	341, 387, 393
BspACI	CCGC	3 cut(s)	36, 80, 446
BspANI	GGCC	5 cut(s)	93, 234, 281, 290, 335
BspCNI	CTCAG	1 cut(s)	303
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	290, 343
BspPI	GGATC	4 cut(s)	336, 349, 382, 388
BspTNI	GGTCTC	1 cut(s)	469
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	4 cut(s)	39, 219, 228, 229
BssMI	GATC	3 cut(s)	341, 387, 393
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	3 cut(s)	41, 221, 230
Bst4CI	ACNGT	2 cut(s)	47, 106
Bst6I	CTCTTC	3 cut(s)	74, 215, 472
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	142, 151, 243
BstDEI	CTNAG	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	327, 411
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	3 cut(s)	344, 390, 396
BstMAI	GTCTC	2 cut(s)	196, 469
BstMBI	GATC	3 cut(s)	341, 387, 393
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 150, 287, 503
BstNI	CCWGG	3 cut(s)	41, 221, 230
BstSCI	CCNGG	5 cut(s)	39, 109, 219, 228, 285
BstSLI	GKGCMC	1 cut(s)	292
BstUI	CGCG	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	76
BstX2I	RGATCY	2 cut(s)	341, 393
BstYI	RGATCY	2 cut(s)	341, 393
BsuRI	GGCC	5 cut(s)	93, 234, 281, 290, 335
BtgZI	GCGATG	1 cut(s)	61
BtrI	CACGTC	2 cut(s)	31, 160
BtsCI	GGATG	2 cut(s)	327, 411
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	142, 151, 243
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	4 cut(s)	91, 232, 288, 289
CseI	GACGC	3 cut(s)	13, 155, 346
CviAII	CATG	2 cut(s)	349, 367
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	3 cut(s)	343, 389, 395
DpnII	GATC	3 cut(s)	341, 387, 393
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
Eam1104I	CTCTTC	3 cut(s)	74, 215, 472
EarI	CTCTTC	3 cut(s)	74, 215, 472
Eco147I	AGGCCT	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	3 cut(s)	39, 219, 228
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	2 cut(s)	352, 370
FaiI	YATR	3 cut(s)	350, 368, 504
FaqI	GGGAC	3 cut(s)	82, 126, 202
FatI	CATG	2 cut(s)	348, 366
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	2 cut(s)	334, 418
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	1 cut(s)	517
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	5 cut(s)	93, 234, 281, 290, 335
HapII	CCGG	5 cut(s)	110, 133, 150, 286, 397
HgaI	GACGC	3 cut(s)	13, 155, 346
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	352, 370
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	3 cut(s)	55, 61, 274
HindII	GTYRAC	3 cut(s)	55, 61, 274
HindIII	AAGCTT	1 cut(s)	170
HpaII	CCGG	5 cut(s)	110, 133, 150, 286, 397
HphI	GGTGA	2 cut(s)	25, 64
Hpy166II	GTNNAC	5 cut(s)	28, 55, 61, 274, 436
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	3 cut(s)	127, 319, 391
Hpy8I	GTNNAC	5 cut(s)	28, 55, 61, 274, 436
Hpy99I	CGWCG	2 cut(s)	149, 278
HpyAV	CCTTC	3 cut(s)	205, 292, 346
HpyCH4III	ACNGT	2 cut(s)	47, 106
HpyCH4IV	ACGT	3 cut(s)	30, 57, 159
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 150, 287, 503
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	3 cut(s)	30, 57, 159
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	352, 370
HspAI	GCGC	1 cut(s)	473
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	341, 387, 393
LmnI	GCTCC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	517
MaeII	ACGT	3 cut(s)	30, 57, 159
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	343, 389, 395
MboI	GATC	3 cut(s)	341, 387, 393
MboII	GAAGA	7 cut(s)	61, 76, 178, 196, 202, 459, 503
MflI	RGATCY	2 cut(s)	341, 393
MhlI	GDGCHC	1 cut(s)	292
MnlI	CCTC	8 cut(s)	19, 77, 134, 178, 218, 245, 271, 306
MroNI	GCCGGC	1 cut(s)	149
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	2 cut(s)	158, 305
MspI	CCGG	5 cut(s)	110, 133, 150, 286, 397
MspR9I	CCNGG	5 cut(s)	41, 111, 221, 230, 287
MvaI	CCWGG	3 cut(s)	41, 221, 230
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	4 cut(s)	146, 150, 287, 503
NaeI	GCCGGC	1 cut(s)	151
NciI	CCSGG	2 cut(s)	111, 287
NdeII	GATC	3 cut(s)	341, 387, 393
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	352, 370
NlaIV	GGNNCC	2 cut(s)	290, 343
NmuCI	GTSAC	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	158
PaeR7I	CTCGAG	1 cut(s)	125
PasI	CCCWGGG	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	448
Psp6I	CCWGG	3 cut(s)	39, 219, 228
PspGI	CCWGG	3 cut(s)	39, 219, 228
PspN4I	GGNNCC	2 cut(s)	290, 343
PspOMI	GGGCCC	1 cut(s)	288
PspPI	GGNCC	4 cut(s)	91, 232, 288, 289
PsuI	RGATCY	2 cut(s)	341, 393
RseI	CAYNNNNRTG	2 cut(s)	158, 305
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	3 cut(s)	341, 387, 393
Sau96I	GGNCC	4 cut(s)	91, 232, 288, 289
ScrFI	CCNGG	5 cut(s)	41, 111, 221, 230, 287
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	9 cut(s)	33, 60, 162, 174, 189, 203, 243, 309, 317
SfiI	GGCCNNNNNGGCC	1 cut(s)	287
Sfr274I	CTCGAG	1 cut(s)	125
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	158, 305
SmlI	CTYRAG	2 cut(s)	125, 236
SmoI	CTYRAG	2 cut(s)	125, 236
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	3 cut(s)	36, 80, 446
SspMI	CTAG	1 cut(s)	517
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	5 cut(s)	39, 109, 219, 228, 285
TaaI	ACNGT	2 cut(s)	47, 106
TaiI	ACGT	3 cut(s)	33, 60, 162
TaqI	TCGA	4 cut(s)	126, 183, 273, 374
TauI	GCSGC	1 cut(s)	449
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	1 cut(s)	160
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.