Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010105

Physical Location & Seq

Genomic Coordinates Reverse (-)

2393686 .. 2394694

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07510.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGACCGGCGCTGAGAACGGCGTGAGAATGACGTCACCAGAGGCGTCTTCAACATCCTCCCTCGCCACCACAAGTGTCCACGTAAGCGCTCTCGACGGACTCGTGAACGTGAACTCTCTCTTCACCATCGCCGTCTTCGTTGGTCTTTCCTTAGCGACTCCAGGACAACACAGCCTCGAACAACGATCCAGCTGCGACGCAAGTGCTGACGTCGCCAAGAAGCTACTGGTCTTCGAAGTCGTCTCCTTCAGCTTCTTCCTCTTCTCCTCTCTTGTAGCTCAGGGTCTTAAGCTTGCCTTAAACCTTCTTAATAGCAAAGACGTCAACGAGATTTTCAGAGCTCACATCAATATCAAGGTTTTGAGATGGGGAATGATGGCTTCTGCTGTCGGATCTGTAATGGGCTGTCTCTTCTTGATGCTCTCTATGGTTAATGTGATTCAGATCCGTCTTGGTTTGCTCTCTTGCGGCAGCAAATCGGCGGCTCAAGCTGTTGCAACGCTCGTCACTCTGGTTTCCTCTGCTCTGCTGATTTACATCTCTACCGCCATTTACGCTTTCTGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

20.01

Weight (kDa)

8.54

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01580 AT3G07510 AT3G07510 AT3G07510
fragaria_vesca	FvH4_2g17600 FvH4_2g17600
malus_domestica	MD05G1155400.v1.1 MD05G1155900.v1.1 MD05G1156100.v1.1 MD10G1149800.v1.1
prunus_persica	Prupe.8G188200_v2.0.a1
pyrus_communis	pycom10g12920
rosa_chinensis	RchiOBHm_Chr6g0282541
rosa_laevigata	RLG00000012886
rosa_multiflora	Rmu_co8275275.1_g000001 Rmu_sc0005697.1_g000012
rosa_roxburghii	Rroxscaffold_7G00186280
rosa_rugosa	Rorug06G0147400
rosa_samantha	Rh6AG260600 Rh6BG263800
rosa_wichuraiana	Rw6G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	35, 213, 324
AciI	CCGC	3 cut(s)	468, 482, 546
AclWI	GGATC	3 cut(s)	180, 400, 439
AcuI	CTGAAG	1 cut(s)	232
AcyI	GRCGYC	4 cut(s)	32, 44, 210, 321
AfeI	AGCGCT	1 cut(s)	88
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	51
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	7 cut(s)	192, 223, 252, 278, 292, 341, 491
AluI	AGCT	7 cut(s)	192, 223, 252, 278, 292, 341, 491
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	2 cut(s)	247, 413
AlwI	GGATC	3 cut(s)	180, 400, 439
Aor51HI	AGCGCT	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	192, 471
AspLEI	GCGC	2 cut(s)	11, 89
AsuHPI	GGTGA	2 cut(s)	27, 115
AsuII	TTCGAA	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	343
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	3 cut(s)	39, 127, 223
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	179, 483
BccI	CCATC	3 cut(s)	134, 360, 370
BceAI	ACGGC	2 cut(s)	34, 116
BcgI	CGANNNNNNTGC	4 cut(s)	174, 185, 208, 219
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	247, 413
BfoI	RGCGCY	2 cut(s)	12, 90
BfrI	CTTAAG	1 cut(s)	287
BisI	GCNGC	4 cut(s)	193, 469, 472, 483
BlsI	GCNGC	4 cut(s)	194, 470, 473, 484
Bme1390I	CCNGG	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	408
BpiI	GAAGAC	3 cut(s)	39, 127, 223
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	2 cut(s)	151, 279
Bpu14I	TTCGAA	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	82
BsaBI	GATNNNNATC	2 cut(s)	443, 536
BsaHI	GRCGYC	4 cut(s)	32, 44, 210, 321
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	231
Bse8I	GATNNNNATC	2 cut(s)	443, 536
BseBI	CCWGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	53
BseJI	GATNNNNATC	2 cut(s)	443, 536
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	179, 483
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	2 cut(s)	247, 413
BsmBI	CGTCTC	1 cut(s)	247
Bsp119I	TTCGAA	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	3 cut(s)	185, 392, 444
BspACI	CCGC	3 cut(s)	468, 482, 546
BspCNI	CTCAG	2 cut(s)	4, 292
BspPI	GGATC	3 cut(s)	180, 400, 439
BspT104I	TTCGAA	1 cut(s)	234
BspTI	CTTAAG	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	3 cut(s)	185, 392, 444
BssNI	GRCGYC	4 cut(s)	32, 44, 210, 321
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	162
Bst6I	CTCTTC	3 cut(s)	125, 266, 416
BstACI	GRCGYC	4 cut(s)	32, 44, 210, 321
BstAFI	CTTAAG	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	82
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	3 cut(s)	12, 151, 279
BstF5I	GGATG	1 cut(s)	53
BstH2I	RGCGCY	2 cut(s)	12, 90
BstHHI	GCGC	2 cut(s)	11, 89
BstKTI	GATC	3 cut(s)	188, 395, 447
BstMAI	GTCTC	2 cut(s)	247, 413
BstMBI	GATC	3 cut(s)	185, 392, 444
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 488, 554
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	179, 483
BstV2I	GAAGAC	3 cut(s)	39, 127, 223
BstX2I	RGATCY	2 cut(s)	392, 444
BstYI	RGATCY	2 cut(s)	392, 444
BtgZI	GCGATG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	2 cut(s)	11, 89
Cfr10I	RCCGGY	1 cut(s)	5
CseI	GACGC	2 cut(s)	33, 206
DdeI	CTNAG	3 cut(s)	12, 151, 279
DpnI	GATC	3 cut(s)	187, 394, 446
DpnII	GATC	3 cut(s)	185, 392, 444
Eam1104I	CTCTTC	3 cut(s)	125, 266, 416
EarI	CTCTTC	3 cut(s)	125, 266, 416
Ecl136II	GAGCTC	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	343
Eco47III	AGCGCT	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	247
FaiI	YATR	1 cut(s)	428
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
Fnu4HI	GCNGC	4 cut(s)	193, 469, 472, 483
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	4 cut(s)	193, 469, 472, 483
GlaI	GCGC	2 cut(s)	10, 88
GluI	GCNGC	4 cut(s)	193, 469, 472, 483
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	2 cut(s)	12, 90
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	2 cut(s)	33, 206
HhaI	GCGC	2 cut(s)	11, 89
Hin1I	GRCGYC	4 cut(s)	32, 44, 210, 321
Hin6I	GCGC	2 cut(s)	9, 87
HinP1I	GCGC	2 cut(s)	9, 87
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	3 cut(s)	99, 157, 439
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	2 cut(s)	27, 115
Hpy166II	GTNNAC	4 cut(s)	79, 106, 112, 325
Hpy188I	TCNGA	3 cut(s)	338, 392, 444
Hpy188III	TCNNGA	3 cut(s)	92, 103, 415
Hpy8I	GTNNAC	4 cut(s)	79, 106, 112, 325
Hpy99I	CGWCG	3 cut(s)	98, 200, 215
HpyAV	CCTTC	2 cut(s)	256, 314
HpyCH4IV	ACGT	5 cut(s)	32, 81, 108, 210, 321
HpyCH4V	TGCA	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 488, 554
HpyF3I	CTNAG	3 cut(s)	12, 151, 279
HpySE526I	ACGT	5 cut(s)	32, 81, 108, 210, 321
Hsp92I	GRCGYC	4 cut(s)	32, 44, 210, 321
HspAI	GCGC	2 cut(s)	9, 87
Kzo9I	GATC	3 cut(s)	185, 392, 444
LpnPI	CCDG	9 cut(s)	19, 51, 147, 174, 202, 212, 266, 497, 547
Lsp1109I	GCAGC	2 cut(s)	179, 483
LweI	GCATC	1 cut(s)	408
MaeII	ACGT	5 cut(s)	32, 81, 108, 210, 321
MaeIII	GTNAC	2 cut(s)	33, 505
MalI	GATC	3 cut(s)	187, 394, 446
MboI	GATC	3 cut(s)	185, 392, 444
MboII	GAAGA	7 cut(s)	39, 112, 127, 223, 247, 253, 403
MflI	RGATCY	2 cut(s)	392, 444
MhlI	GDGCHC	1 cut(s)	343
MlyI	GAGTC	2 cut(s)	93, 151
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	7 cut(s)	34, 67, 71, 185, 269, 277, 529
MseI	TTAA	4 cut(s)	288, 299, 309, 432
MspA1I	CMGCKG	1 cut(s)	192
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	212, 488, 554
NdeII	GATC	3 cut(s)	185, 392, 444
NmuCI	GTSAC	2 cut(s)	33, 505
NspV	TTCGAA	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 135
PfeI	GAWTC	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	194, 470, 473, 484
PleI	GAGTC	2 cut(s)	93, 151
PpsI	GAGTC	2 cut(s)	93, 151
Ppu21I	YACGTR	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	392, 444
PvuII	CAGCTG	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	343
SaqAI	TTAA	4 cut(s)	288, 299, 309, 432
SatI	GCNGC	4 cut(s)	193, 469, 472, 483
Sau3AI	GATC	3 cut(s)	185, 392, 444
SchI	GAGTC	2 cut(s)	93, 151
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	1 cut(s)	408
SfuI	TTCGAA	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	287, 486
SmoI	CTYRAG	2 cut(s)	287, 486
SsiI	CCGC	3 cut(s)	468, 482, 546
SstI	GAGCTC	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	160
TaiI	ACGT	5 cut(s)	35, 84, 111, 213, 324
TaqI	TCGA	3 cut(s)	93, 177, 234
TauI	GCSGC	2 cut(s)	471, 485
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	4 cut(s)	288, 299, 309, 432
Tru9I	TTAA	4 cut(s)	288, 299, 309, 432
TseFI	GTSAC	2 cut(s)	33, 505
TseI	GCWGC	2 cut(s)	192, 471
Tsp45I	GTSAC	2 cut(s)	33, 505
TspGWI	ACGGA	2 cut(s)	111, 437
Vha464I	CTTAAG	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
ZraI	GACGTC	3 cut(s)	33, 211, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.